Ecosyste.ms: Repos
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Package Usage: actions: seqeralabs/action-tower-launch
Launch a workflow using Nextflow Tower (https://tower.nf)
13 versions
Latest release: 6 months ago
View more package details: https://packages.ecosyste.ms/registries/github%20actions/packages/seqeralabs/action-tower-launch
View more repository details: https://repos.ecosyste.ms/hosts/GitHub/repositories/seqeralabs%2Faction-tower-launch
Dependent Repos 110
formbio/neilrnaseq Fork of nf-core/rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.- v1 .github/workflows/cloud_tests_full.yml
- v1 .github/workflows/cloud_tests_small.yml
Size: 61.2 MB - Last synced: 9 months ago - Pushed: 9 months ago
SJ-31/Sporothrix-annotation
- v1 .github/workflows/awsfulltest.yml
- v1 .github/workflows/awstest.yml
Size: 3.21 MB - Last synced: 10 months ago - Pushed: 10 months ago
iaradsouza1/simplealignment
Just a pipeline for STAR alignment- v1 .github/workflows/awsfulltest.yml
- v1 .github/workflows/awstest.yml
Size: 2.2 MB - Last synced: 11 months ago - Pushed: 11 months ago
emilytrybulec/argonaut
pipeline for genome assembly, accepting ONT and/or PacBio HiFi long reads as well as Illumina short reads- v1 .github/workflows/awsfulltest.yml
- v1 .github/workflows/awstest.yml
Size: 3.17 MB - Last synced: 10 days ago - Pushed: 10 days ago
vmikk/SHMatcher
Species hypothesis (SH) matching analysis tool- v1 .github/workflows/awsfulltest.yml
- v1 .github/workflows/awstest.yml
Size: 2.36 MB - Last synced: 26 days ago - Pushed: 26 days ago
FloWuenne/nf-core_molkart Fork of nf-core/molkart
- v2 .github/workflows/awsfulltest.yml
- v2 .github/workflows/awstest.yml
Size: 3.78 MB - Last synced: 5 months ago - Pushed: 5 months ago
goodwright/scrnaseq Fork of nf-core/scrnaseq
A single-cell RNAseq pipeline for 10X genomics data- v1 .github/workflows/awsfulltest.yml
- v1 .github/workflows/awstest.yml
Size: 34.3 MB - Last synced: 8 months ago - Pushed: 8 months ago
nf-core/phageannotator
Pipeline for identifying, annotation, and quantifying phage sequences in (meta)-genomic sequences.- v2 .github/workflows/awsfulltest.yml
- v2 .github/workflows/awstest.yml
Size: 5.03 MB - Last synced: 23 days ago - Pushed: 23 days ago
GDelevoye/rnaseq Fork of nf-core/rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.- v1 .github/workflows/cloud_tests_full.yml
- v1 .github/workflows/cloud_tests_small.yml
Size: 61.2 MB - Last synced: 11 months ago - Pushed: 11 months ago
Arkea-Bio-Corp/ampliseq Fork of nf-core/ampliseq
Amplicon sequencing analysis workflow using DADA2 and QIIME2- v1 .github/workflows/awsfulltest.yml
- v1 .github/workflows/awstest.yml
Size: 11.4 MB - Last synced: 6 months ago - Pushed: 6 months ago
adamrtalbot/sarek Fork of nf-core/sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing- v1 .github/workflows/awstest.yml
- v1 .github/workflows/awsfulltest.yml
- v1 .github/workflows/awsfulltest_germline.yml
Size: 38.8 MB - Last synced: 5 months ago - Pushed: 5 months ago
heylf/nf_core_mcmicro Fork of nf-core/mcmicro
- v2 .github/workflows/awsfulltest.yml
- v2 .github/workflows/awstest.yml
Size: 2.18 MB - Last synced: 8 months ago - Pushed: 8 months ago
DOH-JDJ0303/bs-fetch-nf
- v1 .github/workflows/awsfulltest.yml
- v1 .github/workflows/awstest.yml
Size: 6.39 MB - Last synced: 3 months ago - Pushed: 3 months ago
stepwise-ai-dev/raredisease Fork of nf-core/raredisease
Call and score variants from WGS/WES of rare disease patients.- v1 .github/workflows/awsfulltest.yml
- v1 .github/workflows/awstest.yml
Size: 6.3 MB - Last synced: about 2 months ago - Pushed: 11 months ago
yusmiatiliau/test
test pipeline- v1 .github/workflows/awsfulltest.yml
- v1 .github/workflows/awstest.yml
Size: 13.6 MB - Last synced: 10 months ago - Pushed: 10 months ago
hyeunny/testpipeline-nf Fork of nf-core/testpipeline
A small example pipeline used to test new nf-core infrastructure and common code.- v1 .github/workflows/cloud_tests_full.yml
Size: 2.4 MB - Last synced: 6 months ago - Pushed: 10 months ago
nf-core/multiplesequencealign
A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.- v2 .github/workflows/awsfulltest.yml
- v2 .github/workflows/awstest.yml
Size: 3.76 MB - Last synced: 2 months ago - Pushed: 2 months ago
qbic-pipelines/createpanelofnormals
Create panel of normals for Mutect2 & CNVKit- v2 .github/workflows/awsfulltest.yml
- v2 .github/workflows/awstest.yml
Size: 2.44 MB - Last synced: 10 months ago - Pushed: 10 months ago
Atiqa2/CC-smrnaseq Fork of nf-core/smrnaseq
A small-RNA sequencing analysis pipeline- v1 .github/workflows/awsfulltest.yml
- v1 .github/workflows/awstest.yml
Size: 7.33 MB - Last synced: 10 months ago - Pushed: 11 months ago
VictorDidier/mcmicro Fork of nf-core/mcmicro
An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.- v2 .github/workflows/awsfulltest.yml
- v2 .github/workflows/awstest.yml
Size: 8.88 MB - Last synced: 8 months ago - Pushed: 8 months ago
UncleSamulus/nf-core_zea
Run RepeatMasker on a genome to annotate repeated elements- v2 .github/workflows/awsfulltest.yml
- v2 .github/workflows/awstest.yml
Size: 2.13 MB - Last synced: 10 months ago - Pushed: 10 months ago
rmadupuri/vcftomafgnanno Fork of johnoooh/vcftomafgnanno
- v2 .github/workflows/awsfulltest.yml
- v2 .github/workflows/awstest.yml
Size: 2.18 MB - Last synced: 10 months ago - Pushed: 10 months ago
a4000/ampliseq Fork of nf-core/ampliseq
Amplicon sequencing analysis workflow using DADA2 and QIIME2- v1 .github/workflows/awsfulltest.yml
- v1 .github/workflows/awstest.yml
Size: 11.8 MB - Last synced: 9 months ago - Pushed: 9 months ago
FriederikeHanssen/createpanelofnormals Fork of qbic-pipelines/createpanelofnormals
Create panel of normals for Mutect2- v2 .github/workflows/awsfulltest.yml
- v2 .github/workflows/awstest.yml
Size: 2.26 MB - Last synced: 10 months ago - Pushed: 10 months ago
avani-bhojwani/TransFuse
A pipeline for de novo transcriptome assembly (see dev branch)- v1 .github/workflows/awsfulltest.yml
- v1 .github/workflows/awstest.yml
Size: 2.53 MB - Last synced: about 1 month ago - Pushed: about 1 month ago
Flomics/sarek-DEPRECATED Fork of nf-core/sarek 📦
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing- v1 .github/workflows/awsfulltest.yml
- v1 .github/workflows/awsfulltest_germline.yml
- v1 .github/workflows/awstest.yml
Size: 28.8 MB - Last synced: 2 months ago - Pushed: 2 months ago
m-mahgoub/sarek Fork of nf-core/sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing- v1 .github/workflows/awsfulltest.yml
- v1 .github/workflows/awsfulltest_germline.yml
- v1 .github/workflows/awstest.yml
Size: 76.1 MB - Last synced: 10 months ago - Pushed: 10 months ago
robsyme/sarek Fork of nf-core/sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing- v1 .github/workflows/awsfulltest.yml
- v1 .github/workflows/awsfulltest_germline.yml
- v1 .github/workflows/awstest.yml
Size: 33.3 MB - Last synced: 10 months ago - Pushed: 10 months ago
rhodesch/scrnaseq Fork of nf-core/scrnaseq
A single-cell RNAseq pipeline for 10X genomics data- v1 .github/workflows/awsfulltest.yml
- v1 .github/workflows/awstest.yml
Size: 34.4 MB - Last synced: 10 months ago - Pushed: 10 months ago
dxu104/rnaseq_transcriptome_update Fork of nf-core/rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.- v1 .github/workflows/cloud_tests_full.yml
- v1 .github/workflows/cloud_tests_small.yml
Size: 61.6 MB - Last synced: 5 months ago - Pushed: 5 months ago
DOH-JDJ0303/bigbacter-nf
- v1 .github/workflows/awsfulltest.yml
- v1 .github/workflows/awstest.yml
Size: 5.97 MB - Last synced: about 9 hours ago - Pushed: about 11 hours ago
johnoooh/vcftomafgnanno
- v2 .github/workflows/awsfulltest.yml
- v2 .github/workflows/awstest.yml
Size: 3 MB - Last synced: 10 months ago - Pushed: 10 months ago
apetkau/nf-core-genomicnomenclature
- v2 .github/workflows/awsfulltest.yml
- v2 .github/workflows/awstest.yml
Size: 2.23 MB - Last synced: 9 months ago - Pushed: 9 months ago
apetkau/nf-core-mlstprofiler
- v2 .github/workflows/awsfulltest.yml
- v2 .github/workflows/awstest.yml
Size: 2.17 MB - Last synced: 6 months ago - Pushed: 6 months ago
adamrtalbot/fetchngs Fork of nf-core/fetchngs
Pipeline to fetch metadata and raw FastQ files from public and private databases- v1 .github/workflows/cloud_tests_full.yml
- v1 .github/workflows/cloud_tests_small.yml
Size: 3.72 MB - Last synced: 3 months ago - Pushed: 3 months ago
avantonder/assembleBAC-ONT
This pipeline assembles ONT sequence data- v2 .github/workflows/awsfulltest.yml
- v2 .github/workflows/awstest.yml
Size: 2.77 MB - Last synced: 1 day ago - Pushed: 1 day ago
tfalkarkea/metatdenovo Fork of nf-core/metatdenovo
- v2 .github/workflows/awsfulltest.yml
- v2 .github/workflows/awstest.yml
Size: 9.41 MB - Last synced: 8 months ago - Pushed: 8 months ago
B221655-2022/Riboseq_pipeline
- v2 .github/workflows/awsfulltest.yml
- v2 .github/workflows/awstest.yml
Size: 17.1 MB - Last synced: 9 months ago - Pushed: 9 months ago
kubranarci/testpipeline Fork of nf-core/testpipeline
A small variant calling pipeline using nf-core infrastructure and common code.- v2 .github/workflows/awsfulltest.yml
- v2 .github/workflows/awstest.yml
- v1 .github/workflows/cloud_tests_full.yml
Size: 20.4 MB - Last synced: 9 months ago - Pushed: 9 months ago
maxulysse/nf-core_scrnaseq Fork of nf-core/scrnaseq
A single-cell RNAseq pipeline for 10X genomics data- v1 .github/workflows/awsfulltest.yml
- v1 .github/workflows/awstest.yml
Size: 34.8 MB - Last synced: 9 days ago - Pushed: 10 days ago
Aratz/nf-core-demultiplex Fork of nf-core/demultiplex
Demultiplexing pipeline for sequencing data- v1 .github/workflows/awsfulltest.yml
- v1 .github/workflows/awstest.yml
Size: 12.7 MB - Last synced: 16 days ago - Pushed: 16 days ago
JohannesKersting/sarek Fork of nf-core/sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing- v1 .github/workflows/awsfulltest.yml
- v1 .github/workflows/awsfulltest_germline.yml
- v1 .github/workflows/awstest.yml
Size: 33.4 MB - Last synced: 9 months ago - Pushed: 9 months ago
willros/nf-core-mag Fork of nf-core/mag
Assembly and binning of metagenomes- v2 .github/workflows/awsfulltest.yml
- v2 .github/workflows/awstest.yml
Size: 17.5 MB - Last synced: 9 months ago - Pushed: 9 months ago
Kiliankleemann/rnaseq Fork of nf-core/rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.- v1 .github/workflows/cloud_tests_full.yml
- v1 .github/workflows/cloud_tests_small.yml
Size: 61.6 MB - Last synced: 9 months ago - Pushed: about 1 year ago
mcjmigdal/scrnaseq Fork of nf-core/scrnaseq
A single-cell RNAseq pipeline for 10X genomics data- v2 .github/workflows/awsfulltest.yml
- v2 .github/workflows/awstest.yml
Size: 34.4 MB - Last synced: 9 months ago - Pushed: 9 months ago
PayamEmami/methylseq_ovation
- v1 .github/workflows/awsfulltest.yml
- v1 .github/workflows/awstest.yml
Size: 3.75 MB - Last synced: 9 months ago - Pushed: 9 months ago
FriederikeHanssen/vcftomaf Fork of qbic-pipelines/vcftomaf
- v2 .github/workflows/awsfulltest.yml
- v2 .github/workflows/awstest.yml
Size: 2.52 MB - Last synced: 3 months ago - Pushed: 3 months ago
formbio/neil-test-atacseq Fork of nf-core/atacseq
ATAC-seq peak-calling and QC analysis pipeline- v2 .github/workflows/awsfulltest.yml
Size: 9.18 MB - Last synced: 9 months ago - Pushed: 9 months ago