Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

Package Usage: conda: bioawk

View more package details: https://packages.ecosyste.ms/registries/anaconda.org/packages/bioawk

Dependent Repos 6

BleekerLab/small-rna-seq-pipeline
A pipeline to annotate miRNAs, phased siRNAs and other types using a reference genome and experimental sRNA-Seq data
  • 1.0.* environment.yml

Size: 76.7 MB - Last synced: 7 months ago - Pushed: almost 2 years ago

czbiohub-sf/scrnaseq-for-the-99-percent 📦
Code accompanying the paper titled, "Single-cell transcriptomics for the 99.9% of species without reference genomes" by Botvinnik et al, 2021
  • environment.yml

Size: 64.6 MB - Last synced: 12 months ago - Pushed: about 1 year ago

l.teboul/cas9point4
  • environment.yml

Last synced: 12 months ago

petedprice/mcbnano
  • environment.yml

Last synced: over 1 year ago

visanuwan/cresil
CReSIL: Accurate Identification of Extrachromosomal Circular DNA from Long-read Sequences
  • 1.0.* environment.yml

Size: 994 KB - Last synced: 7 months ago - Pushed: 8 months ago

rchapman2000/ont-ref-based-assembly
A reference-based assembly pipeline designed for analysis of Oxford Nanopore sequencing data
  • 1.0.* environment.yml

Size: 47.9 KB - Last synced: 12 months ago - Pushed: 12 months ago

rchapman2000/ont-de-novo-assembly
A de novo assembly pipeline for sequencing data using Oxford Nanopore Technologies
  • 1.0.* environment.yml

Size: 10.7 KB - Last synced: 12 months ago - Pushed: 12 months ago

jhgille2/cs590_2023
Random files for CS590 Spring 2023
  • 1.0 e9/environment.yml

Size: 39.7 MB - Last synced: about 1 year ago - Pushed: about 1 year ago

Zymo-Research/aladdin-smrnaseq
Public repository for smRNAseq pipeline compatible with Aladdin platform
  • 1.0 environment.yml

Size: 153 KB - Last synced: 7 months ago - Pushed: 12 months ago

Kirk3gaard/2023-basecalling-benchmarks
  • 1.0.* environment.yml

Size: 19.6 MB - Last synced: 5 months ago - Pushed: 5 months ago

LankyCyril/edgecase
A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, and for haplotype inference.
  • 1.0 environment.yaml

Size: 167 MB - Last synced: 4 months ago - Pushed: 4 months ago

biomonika/HPP
  • 1.0.* environment.yml
  • 1.0.* palindromes/environment.yml

Size: 432 KB - Last synced: 1 day ago - Pushed: 1 day ago

IdoBar/3030NSC-workshops-binder
  • .binder/environment.yml

Size: 1.2 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

prairie-guy/UBS-seq_basic
Minimally Viable UBS-seq Pipline
  • environment.yaml

Size: 971 KB - Last synced: about 2 months ago - Pushed: about 2 months ago

nf-core/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
  • 1.0.* modules/nf-core/bioawk/environment.yml

Size: 146 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

prairie-guy/BAT-seq_231228
BAT-seq 2023-12-28
  • environment.yaml

Size: 23.2 MB - Last synced: 24 days ago - Pushed: 24 days ago

jeppebayer/genome_assembly_and_annotation
  • scripts/old_HiC/workflow_source/environment.yml

Size: 35 MB - Last synced: 15 days ago - Pushed: 15 days ago