Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

Package Usage: conda: bioconductor-scater

View more package details: https://packages.ecosyste.ms/registries/anaconda.org/packages/bioconductor-scater

Dependent Repos 6

rargelaguet/mouse_organogenesis_10x_multiome_publication
Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""
  • rna/snakemake/environment.yaml

Size: 2.17 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

scilifelab-lts/lts-workflows-sm-scrnaseq
  • 1.6.0.* lts_workflows_sm_scrnaseq/environment.yaml

Size: 2.28 MB - Last synced: over 1 year ago

rargelaguet/10x_gastrulation_DNMTs
Dnmt3a, Dnmt3b, Dnmt1 KO scRNA-seq mouse early organogenesis
  • 1.20.* snakemake/environment.yaml

Size: 3.57 MB - Last synced: 2 months ago - Pushed: over 1 year ago

NBISweden/sauron
Website is at:
  • 1.10.* environment.yml

Size: 17.1 MB - Last synced: 12 months ago - Pushed: about 3 years ago

scilifelab-lts/sauron
  • 1.10.* environment.yml

Size: 21 MB - Last synced: over 1 year ago

lkmklsmn/DrivAER
DrivAER: Identification of Driving transcriptional programs using AutoEncoder based Relevance scores
  • 1.14.0 environment.yml

Size: 116 MB - Last synced: 7 months ago - Pushed: over 3 years ago

cutsort/shiny
  • environment.yml

Size: 1.77 MB - Last synced: about 1 year ago - Pushed: almost 3 years ago

gabnasello/sc-r-env
Docker Image for scRNA-seq data analysis in R
  • environment.yml

Size: 6.84 KB - Last synced: 7 days ago - Pushed: 8 days ago

ivelet/tools-iuc Fork of galaxyproject/tools-iuc
Tool Shed repositories maintained by the Intergalactic Utilities Commission
  • 1.20.0.* tools/scater/environment.yml

Size: 1.09 GB - Last synced: about 1 month ago - Pushed: about 1 month ago

sinanugur/scrna-workflow
scRNA workflow of Cellsnake
  • 1.26.0 environment.yml

Size: 1.44 MB - Last synced: 3 months ago - Pushed: 3 months ago

Mye-InfoBank/SIMBA
A nextflow pipeline for processing sc-RNASeq data, performing QC and integration and preparing the results for further investigation using cellxgene.
  • 1.30.1 docker/rpy/environment.yml

Size: 981 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

galaxyproject/tools-iuc
Tool Shed repositories maintained by the Intergalactic Utilities Commission
  • 1.20.0.* tools/scater/environment.yml

Size: 1.22 GB - Last synced: about 1 month ago - Pushed: about 1 month ago