Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

Package Usage: conda: coreutils


2 versions
Latest release: almost 4 years ago

View more package details: https://packages.ecosyste.ms/registries/anaconda.org/packages/coreutils

Dependent Repos 32

flatsurf/flatsurf
Translation Surfaces in C++/Python
  • libflatsurf/environment.yml

Size: 8.02 MB - Last synced: 4 months ago - Pushed: 4 months ago

flatsurf/e-antic
Embedded algebraic number fields
  • libeantic/environment.yml
  • pyeantic/environment.yml

Size: 8.19 MB - Last synced: 4 months ago - Pushed: 4 months ago

rchapman2000/de-novo-assembly-pipeline
  • 9.1 environment.yml

Size: 60.5 KB - Last synced: over 1 year ago - Pushed: over 1 year ago

cjfiscus/Kmer-it
  • 8.25.* workflow/envs/environment.yaml

Size: 42 MB - Last synced: 10 months ago - Pushed: over 3 years ago

edotau/fishingcluster
  • 8.31 workflows/atacseq/environment.yml

Size: 3.74 MB - Last synced: about 1 year ago - Pushed: about 3 years ago

flatsurf/arbxx
C++/Python wrappers for the Arb library
  • libarbxx/environment.yml
  • pyarbxx/environment.yml

Size: 1.18 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

flatsurf/unique-factory
A header-only library to add UniqueFactory semantics to deduplicate parent structures
  • environment.yml

Size: 198 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

antmicro/symbiflow-examples-bot
  • eos-s3/environment.yml

Size: 27.5 MB - Last synced: about 2 months ago - Pushed: almost 3 years ago

russHyde/code_as_data
Analysis of code in R dev packages (for a planned talk)
  • 8.31.* conda/environment.yml

Size: 295 KB - Last synced: 3 months ago - Pushed: 8 months ago

polio-nanopore/piranha
  • 9.1.* environment.yml

Size: 34.9 MB - Last synced: 11 days ago - Pushed: 11 days ago

ExternalRepositories/standardese Fork of standardese/standardese
A (work-in-progress) nextgen Doxygen for C++
  • environment.yml

Size: 2.49 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

flatsurf/gmpxxll
The missing long long functions in GMP's C++ interface
  • environment.yml

Size: 5.5 MB - Last synced: 7 months ago - Pushed: 7 months ago

steamboat/titan-nf
A Nextflow wrapper around Titan-GC. Documentation available at https://steamboat.gitlab.io/titan-nf/
  • 8.32.* environment.yml

Last synced: over 1 year ago

mr-eyes/denovo-rnaseq
De novo assembly, Differential gene expression, and annotation workflow
  • 8.25 environment.yml

Size: 1.79 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

cnrgh/LodSeq
LodSeq performs the genetic linkage analysis across families, by computing lod-scores given a gvcf file and a related tfam pedigree file
  • environment.yaml

Last synced: over 1 year ago

elarsonneur/LodSeq
LodSeq performs the genetic linkage analysis across families, by computing lod-scores given a gvcf file and a related tfam pedigree file
  • environment.yaml

Last synced: over 1 year ago

sunsetyerin/BIOF501_term_project
repository for UBC BIOF501 term project
  • >=8.31 envs/environment.yaml

Size: 75 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

armossa/Drought_index
Practice reproducible research while studying the state of drought around the globe
  • >=9.1 environment.yml

Size: 65.5 MB - Last synced: 5 months ago - Pushed: 5 months ago

sinanugur/MirMachine
MirMachine, a command line tool to detect microRNA homologs in genome sequences.
  • 8.31.* environment.yml

Size: 43 MB - Last synced: about 1 month ago - Pushed: 3 months ago

saraedum/e-antic Fork of flatsurf/e-antic
embedded algebraic number fields (on top of antic)
  • libeantic/environment.yml

Size: 4.41 MB - Last synced: 5 months ago - Pushed: 5 months ago

saraedum/intervalxt Fork of flatsurf/intervalxt
Interval Exchange Transformations
  • libintervalxt/environment.yml

Size: 1020 KB - Last synced: 4 months ago - Pushed: 4 months ago

saraedum/flatsurf Fork of flatsurf/flatsurf
  • libflatsurf/environment.yml

Size: 4.25 MB - Last synced: 4 months ago - Pushed: 4 months ago

standardese/standardese
A (work-in-progress) nextgen Doxygen for C++
  • environment.yml

Size: 2.49 MB - Last synced: about 2 months ago - Pushed: 11 months ago

gw-odw/odw-2018
Software for Open Data Workshop 2018
  • 8.31 environment.yml

Size: 21.1 MB - Last synced: 10 days ago - Pushed: 10 days ago

biocompute-objects/bco-ro-example-chipseq
Packaging a IEEE 2791 described BioCompute Object as RO-Crate, using nf-core/chipseq as example
  • 8.* environment.yml

Size: 107 MB - Last synced: about 2 months ago - Pushed: about 3 years ago

gw-odw/odw-2020
Software tutorials for GW Open Data Workshop #3
  • 8.31 environment.yml

Size: 20.4 MB - Last synced: about 2 months ago - Pushed: over 3 years ago

IanSudbery/alvarez_et_al
Code and other scripts for Alvarez-Beneyas et al 2020
  • 8.31 environment.yml

Size: 41.2 MB - Last synced: 10 months ago - Pushed: over 2 years ago

lifebit-ai/jax-sci-nf
  • environment.yml

Size: 3.91 KB - Last synced: about 1 month ago - Pushed: over 3 years ago

James-S-Santangelo/glue_dnaSeqQC
  • 8.25 environment.yaml

Size: 9.51 MB - Last synced: 10 months ago - Pushed: about 1 year ago

mbh038/drought_index
A project to practise reproducible research practices while studying the state of drought around the world.
  • 8.32.* environment.yml

Size: 98.6 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

rchapman2000/ont-ref-based-assembly
A reference-based assembly pipeline designed for analysis of Oxford Nanopore sequencing data
  • 9.1.* environment.yml

Size: 47.9 KB - Last synced: about 1 year ago - Pushed: about 1 year ago

rchapman2000/ont-de-novo-assembly
A de novo assembly pipeline for sequencing data using Oxford Nanopore Technologies
  • 9.1.* environment.yml

Size: 10.7 KB - Last synced: about 1 year ago - Pushed: about 1 year ago

rpetit3/illumina-cleanup 📦
A simple pipeline for pre-processing Illumina FASTQ files.
  • 8.30 environment.yml

Size: 4.07 MB - Last synced: 3 months ago - Pushed: 3 months ago

transXpress/transXpress-nextflow
transXpress: a Nextflow pipeline for rapid de novo transcriptome assembly and annotation
  • 8.31 environment.yml

Size: 47 MB - Last synced: about 1 year ago - Pushed: about 2 years ago

shilpagarg/DipAsm
  • 8.25.* docker/environment.yml
  • 8.25.* environment.yml

Size: 124 MB - Last synced: 7 months ago - Pushed: almost 4 years ago

AstrobioMike/binder-conda-amplicon
  • 9.1.* environment.yml

Size: 18.6 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

AstrobioMike/binder-conda-unix
  • 9.1.* environment.yml

Size: 58.6 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

pommevilla/lamps_incubation
  • >=9.1 environment.yml

Size: 84.8 MB - Last synced: 9 months ago - Pushed: 9 months ago

socialgene/sgnf
SocialGene's Nextflow Pipeline
  • dockerfiles/hmmer/environment.yaml
  • dockerfiles/hmmer_plus/environment.yaml
  • >=9.3 dockerfiles/sgpy/sgpy_base/environment.yaml

Size: 2.82 MB - Last synced: 3 months ago - Pushed: 3 months ago

stain/ro-index-paper
Research Object Index paper (draft)
  • >8.30* environment.yml

Size: 88.6 MB - Last synced: about 1 month ago - Pushed: about 4 years ago

Heinriciro/standardese Fork of standardese/standardese
A (work-in-progress) nextgen Doxygen for C++
  • environment.yml

Size: 2.48 MB - Last synced: 11 months ago - Pushed: over 1 year ago

szhan/onekg_analysis
Evaluation of genotype imputation methods using the unified genealogy dataset
  • 9.3 environment.yml

Size: 512 KB - Last synced: 11 months ago - Pushed: 11 months ago

Arul16psp05/odw-2019 Fork of gw-odw/odw-2019
  • 8.31 environment.yml

Size: 35.5 MB - Last synced: 11 months ago - Pushed: about 4 years ago

battyone/odw-2020 Fork of gw-odw/odw-2020
Software tutorials for GW Open Data Workshop #3
  • 8.31 environment.yml

Size: 20.4 MB - Last synced: about 2 months ago - Pushed: over 3 years ago

battyone/odw-2018 Fork of gw-odw/odw-2018
Software for Open Data Workshop 2018
  • 8.31 environment.yml

Size: 23 MB - Last synced: about 2 months ago - Pushed: over 4 years ago

battyone/odw-2019 Fork of gw-odw/odw-2019
  • 8.31 environment.yml

Size: 35.5 MB - Last synced: about 2 months ago - Pushed: about 4 years ago

nf-core/pgdb Fork of bigbio/pgdb
The ProteoGenomics database generation workflow creates different protein databases for ProteoGenomics data analysis.
  • 8.31.* environment.yml

Size: 3.06 MB - Last synced: 22 days ago - Pushed: 22 days ago

socialgene/sgpy
Python package for creating and interacting with graph databases of protein domains and their genome coordinates
  • 9.3 docker/sgpy_base/environment.yaml

Size: 17.1 MB - Last synced: 29 days ago - Pushed: 30 days ago

pschloss/pds_drought_index
  • 9.1.* workflow/envs/environment.yml

Size: 34.9 MB - Last synced: about 2 months ago - Pushed: about 2 months ago

pommevilla/one_week_ahead
Snakemake pipeline to reproduce the results in the forthcoming paper "One week ahead prediction of harmful algal blooms in Iowa lakes"
  • >=9.1 environment.yml

Size: 86.6 MB - Last synced: 4 months ago - Pushed: 6 months ago

roidocampo/dotfiles
My configuration files
  • apps/aViewer.app/Contents/Resources/environment.yml

Size: 36.6 MB - Last synced: 4 months ago - Pushed: 4 months ago

riffomonas/drought_index
A project to practice reproducible research practices while studying the state of drought around the world
  • >=9.1 environment.yml

Size: 335 MB - Last synced: about 2 hours ago - Pushed: about 16 hours ago

openradar/erad2022
Open Source Weather Radar Software Course
  • binder/environment.yml
  • environment.yml

Size: 235 MB - Last synced: 2 months ago - Pushed: 2 months ago

elinneb/596-15_S2024_processSingleMoutput_R
  • 9.1.* environment.yml

Size: 93.6 MB - Last synced: 2 months ago - Pushed: 2 months ago

nf-core/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
  • 8.30.* modules/nf-core/cat/fastq/environment.yml
  • 9.1.* modules/nf-core/custom/tabulartogseacls/environment.yml
  • 9.1.* modules/nf-core/custom/tabulartogseagct/environment.yml
  • 8.25.* modules/nf-core/gnu/sort/environment.yml
  • 9.4.* modules/nf-core/kraken2/build/environment.yml
  • 9.4.* modules/nf-core/kraken2/kraken2/environment.yml
  • 9.1.* modules/nf-core/md5sum/environment.yml
  • 9.1.* modules/nf-core/shasum/environment.yml

Size: 146 MB - Last synced: about 2 months ago - Pushed: about 2 months ago

nf-cmgg/preprocessing
Preprocessing workflow for sequencing data at CMGG
  • 9.1.* modules/nf-core/md5sum/environment.yml

Size: 6.63 MB - Last synced: 2 months ago - Pushed: 2 months ago

marchoeppner/ncrna-annotation
Annotate ncRNAs from assemblies using Rfam
  • 8.30.* modules/cat_fastq/environment.yml

Size: 72.6 MB - Last synced: 18 days ago - Pushed: 18 days ago

eQTLGen/ConvertVcf2Hdf5
eQTLGen phase II ipeline for converting imputed .vcf files into .hdf5 format.
  • 8.31.* environment.yml

Size: 49.3 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

BirgitRijvers/emc-cancermicro
  • 9.4.* modules/nf-core/kraken2/build/environment.yml
  • 9.4.* modules/nf-core/kraken2/kraken2/environment.yml

Size: 1.13 MB - Last synced: 27 days ago - Pushed: 28 days ago

nf-core/scnanoseq
Single-cell/nuclei pipeline for data derived from Oxford Nanopore
  • 8.30.* modules/nf-core/cat/fastq/environment.yml

Size: 21 MB - Last synced: 13 days ago - Pushed: 14 days ago

genomic-medicine-sweden/tomte
  • 8.30.* modules/nf-core/cat/fastq/environment.yml

Size: 69.1 MB - Last synced: 15 days ago - Pushed: 15 days ago

eQTLGen/CisTransColoc
  • 9.1.* environment.yml

Size: 34.2 KB - Last synced: about 19 hours ago - Pushed: about 20 hours ago