jellyfish | conda | Package Usage

spyder-ide/binder-environments

Binder environments to test pull requests in our organization

>=0.7 binder/environment.yml

Size: 419 KB - Last synced: about 2 months ago - Pushed: about 2 months ago

cjfiscus/Kmer-it

2.2.10.* workflow/envs/environment.yaml

Size: 42 MB - Last synced: 10 months ago - Pushed: over 3 years ago

KWB-R/geosalz.mf

ModFlow Model for Project GeoSalz

0.9.0 environment.yml

Size: 60.5 KB - Last synced: 4 months ago - Pushed: over 1 year ago

AnasAito/SkillNER

A (smart) rule based NLP module to extract job skills from text

environment.yml

Size: 15.2 MB - Last synced: about 1 month ago - Pushed: 4 months ago

stephansanders/citation-overlap

Matches overlapping citations for literature reviews

environment.yml

Size: 464 KB - Last synced: about 1 year ago - Pushed: over 2 years ago

Dowlette/Naive-Observer-Manuscript

0.9.0 environment.yml

Size: 816 KB - Last synced: 8 months ago - Pushed: 8 months ago

JosephLalli/pangenie Fork of eblerjana/pangenie

Incorporating pre/post variant filtering when aligning to reference pangenomes

2.2.10 environment.yml

Size: 1.2 MB - Last synced: over 1 year ago - Pushed: over 1 year ago

NBISweden/assemblyeval-smk

Snakemake workflow for evaluation of assemblies

workflow/wrappers/bio/jellyfish/count/environment.yaml
workflow/wrappers/bio/jellyfish/histo/environment.yaml
workflow/wrappers/bio/jellyfish/merge/environment.yaml

Size: 2.6 MB - Last synced: 5 months ago - Pushed: 5 months ago

marysa/ACDC2022

Python environment and analysis files for ACDC 2022

0.9.0.* python/environment.yml

Size: 46.6 MB - Last synced: 2 days ago - Pushed: almost 2 years ago

24Beast/Gym_App

A simple application to manage member records.

0.9.0 environment.yml

Size: 101 KB - Last synced: over 1 year ago - Pushed: over 1 year ago

mpieva/quicksand-build

The mpieva/quicksand helper pipeline

1.1.12 envs/environment.yml

Size: 75.2 KB - Last synced: 2 months ago - Pushed: 12 months ago

kirbyvisp/marmo

MARMO is a Modular and Robust pipeline for iMmune single-cell multi-Omics implemented in Snakemake.

2.2.6 environment.yaml

Size: 2.86 MB - Last synced: over 1 year ago

kirbyvisp/vdjpuzzle

2.2.6.* environment.yml

Size: 37.8 MB - Last synced: over 1 year ago

scilifelab-lts/lts-workflows-sm-metagenomics

>=1 lts_workflows_sm_metagenomics/envs/environment.yaml

Size: 428 MB - Last synced: over 1 year ago

gwcbi/haphpipe

NGS viral assembly and population genetics

0.6.1 environment.yml

Size: 2.35 MB - Last synced: 8 months ago - Pushed: over 3 years ago

NBISweden/manticore-smk

Snakemake workflow for non-model organism analyses

workflow/wrappers/bio/jellyfish/count/environment.yaml
workflow/wrappers/bio/jellyfish/histo/environment.yaml

Size: 1.07 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

kirbyvisp/vdjpuzzle2

VDJPuzzle version 2

2.2.6 environment.yaml

Size: 29.7 MB - Last synced: over 1 year ago

jana_ebler/genotyping-experiments

0.6.1 env/environment.yml

Size: 22.7 MB - Last synced: over 1 year ago

beliveau-lab/OligoMiner

Genome-scale design tool for oligo hybridization probes

2.2.10.* environment.yml

Size: 11.4 MB - Last synced: 23 days ago - Pushed: about 3 years ago

kativenOG/NLP_assignments

Assignments for the Natural Language Process class (2022/2023).

0.9.0 environment.yml

Size: 368 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

NikitaNazarov179/2.14

0.9.0 environment.yml

Size: 1.22 MB - Last synced: 2 days ago - Pushed: over 1 year ago

eudesbarbosa/snappy-pipeline Fork of bihealth/snappy-pipeline

SNAPPY Nucleic Acid Processing in Python

2.2.6 snappy_wrappers/wrappers/lohhla/environment.yaml

Size: 2.16 MB - Last synced: over 1 year ago - Pushed: over 1 year ago

bradleybossard/easy-intro-to-natural-language-processing

0.6.1 environment.yaml

Size: 7.81 KB - Last synced: about 2 months ago - Pushed: over 1 year ago

lluisDTU/MLOps

0.9.0 s1_development_environment/environment.yml

Size: 13 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

healthyPlant/PhytoPipe

environment.yaml

Size: 114 MB - Last synced: 5 months ago - Pushed: 5 months ago

MBHallgren/LPF

0.9.0.* environment.yml

Size: 202 MB - Last synced: about 1 year ago - Pushed: about 1 year ago

percyfal/snakemake-rules

Library of snakemake rules.

environment.yaml

Size: 3.85 MB - Last synced: about 1 year ago - Pushed: over 5 years ago

lisakmalins/dna-by-davinci

A user-friendly, reproducible, and efficient pipeline to design whole-chromosome paints.

2.2.10.* environment.yaml

Size: 950 KB - Last synced: 10 months ago - Pushed: over 2 years ago

neavemj/mappd

Metagenomic Analysis Pipeline for Pathogen Discovery

2.2.10 environment.yaml

Size: 924 KB - Last synced: 9 months ago - Pushed: 9 months ago

Cirdans-Home/parallelbvm

Python Code for Parallel BVM

0.9.0 environment.yml

Size: 229 KB - Last synced: 10 months ago - Pushed: about 2 years ago

dvginneken/Kmer_analysis

2.2.10.* environment.yaml

Size: 15.6 KB - Last synced: over 1 year ago - Pushed: over 1 year ago

vergauwenthomas/demo_ee_rmi

Demo google-earth-engine RMI

0.9.0 environment.yml

Size: 21.5 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

transXpress/transXpress-nextflow

transXpress: a Nextflow pipeline for rapid de novo transcriptome assembly and annotation

2.2.10 environment.yml

Size: 47 MB - Last synced: over 1 year ago - Pushed: about 2 years ago

saumyabhadani95/trickortruth

The repository for the crowdsourcing project "Trick or Truth" to identify misleading headlines.

0.9.0 deployment/environment.yml

Size: 20.5 KB - Last synced: about 1 year ago - Pushed: about 1 year ago

medvir/Time2Infection

0.9.0 environment.yml

Size: 7.81 KB - Last synced: 10 months ago - Pushed: about 2 years ago

casperch/snakemake-wrappers

snakemake-wrappers

2.2.10 bio/jellyfish/count_histo/environment.yaml

Size: 119 MB - Last synced: about 2 months ago - Pushed: almost 4 years ago

Miachol/vdjpuzzle2

2.2.6 environment.yaml

Size: 28.8 MB - Last synced: about 1 year ago - Pushed: about 5 years ago

botake/LLMemory

0.9.0 environment.yml

Size: 15.6 KB - Last synced: 11 months ago - Pushed: 11 months ago

garyasd/Fast_MaskedPanGenie

2.2.10 environment.yml

Size: 896 KB - Last synced: 11 months ago - Pushed: 11 months ago

NMech/AI_IIT110_Task_Image_Classification_And_Transfer_Learning

0.9.0 environment.yml

Size: 14.9 MB - Last synced: 11 months ago - Pushed: 11 months ago

mavasbel/model_reduction

0.9.0 environment.yml

Size: 10.8 MB - Last synced: 5 months ago - Pushed: 6 months ago

rik030/COL772

This repository contains all the assignments and notes of COL772(Natural Language Processing)

0.9.0 environment.yml

Size: 344 KB - Last synced: 11 months ago - Pushed: over 1 year ago

mrclary/spyder Fork of spyder-ide/spyder

Official repository for Spyder - The Scientific Python Development Environment

>=0.7 binder/environment.yml

Size: 126 MB - Last synced: 17 days ago - Pushed: 17 days ago

chaitra-arch/arch_streaming_snowflake

0.9.0 environment.yml

Size: 452 KB - Last synced: 6 months ago - Pushed: 6 months ago

bihealth/snappy-pipeline

SNAPPY Nucleic Acid Processing in Python

2.2.6 snappy_wrappers/wrappers/lohhla/environment.yaml

Size: 7.57 MB - Last synced: about 2 months ago - Pushed: about 2 months ago

laat0003/NCGRT_IntroFlopy

Workshop notebooks introducing MF6 with Flopy

1.0.1 environment.yml

Size: 36.2 MB - Last synced: 7 months ago - Pushed: 7 months ago

aya0221/Mice_3D_Tracking

lab: using a intel depth camera, tracking 2 mice

1.0.1 environment.yml

Size: 134 MB - Last synced: 6 months ago - Pushed: 6 months ago

xinyue123-q/Python-based-polymer-unit-recognition-script-PURS-2.0

1.The polymer-units(repeating units) are identified from the SMILES code of the polymer

0.9.0 environment.yml

Size: 9.01 MB - Last synced: about 15 hours ago - Pushed: about 16 hours ago

sik247/Equity.ai

Application Providing Leverage for Retail Investors by Providing Tested ML Models

1.0.1 environment.yml

Size: 2.94 MB - Last synced: 3 months ago - Pushed: 3 months ago

Inky-13/eel5716

0.9.0 HW2/environment.yml

Size: 40.8 MB - Last synced: 6 months ago - Pushed: 6 months ago

maxtenenbaum/deku_ephys

0.9.0 environment.yml

Size: 73.3 MB - Last synced: 6 months ago - Pushed: 6 months ago

LankyCyril/edgecase

A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, and for haplotype inference.

2.2.10 environment.yaml

Size: 167 MB - Last synced: 4 months ago - Pushed: 4 months ago

Aleksandir/BillyHyde-WebScraper

This project scrapes product data from a website using Python scripts. It first collects links with link_scraper.py, then extracts product data with data_scraper.py, and finally analyzes the data with data_tools.py.

1.0.1 environment.yml

Size: 37.1 KB - Last synced: 5 months ago - Pushed: 5 months ago

stajichlab/PopGenomics_template

Template for Population Genomics variant calling

environment.yml

Size: 131 KB - Last synced: 5 months ago - Pushed: 5 months ago

Sreebhargavibalijaa/conformal_prediction_FL

0.9.0 FedAvg-main_conformal_prediction/environment.yml
0.9.0 FedAvg-main_conformal_prediction_cipahr/environment.yml

Size: 1.57 MB - Last synced: 5 months ago - Pushed: 5 months ago

Soothysay/ICHE-Notes-CDI

Our Code for Reproducibility of MIMIC-III Results for our ICHE Paper

0.9.0 environment.yml

Size: 31.3 KB - Last synced: 5 months ago - Pushed: 5 months ago

MayGo/ai-demos

0.9.0 img-to-audio-story/environment.yaml

Size: 34.2 KB - Last synced: about 1 month ago - Pushed: 9 months ago

maxtenenbaum/space_rad

0.9.0 environment.yml

Size: 52.5 MB - Last synced: 4 months ago - Pushed: 4 months ago

dib-lab/TheGreatGenotyper

2.2.10.* environment.yml

Size: 68.3 MB - Last synced: about 2 months ago - Pushed: about 2 months ago

PASTAplus/umbra

APIs for "shadow" metadata

0.8.2.* environment.yml

Size: 151 KB - Last synced: about 2 months ago - Pushed: 3 months ago

cisco-open/lion

LION – Log Intelligence and Optimization Network

==0.9.0 environment.yml

Size: 17.4 MB - Last synced: 3 months ago - Pushed: 3 months ago

ansue1234/SML_SMA_Haptics_Demo

The source code for the demo of the SMA Haptic device from the Soft Machines Lab

1.0.1 environment.yml

Size: 3.69 MB - Last synced: 2 months ago - Pushed: 2 months ago

nrietze/ArcticDroughtPaper

Code used in Rietze et al. (in prep): Summer drought weakens land surface cooling by tundra vegetation

0.9.0.* code/environment.yml

Size: 8.78 MB - Last synced: about 2 months ago - Pushed: 3 months ago

BIT-DYN/OpenGraph

[..] OpenGraphs: Open-Vocabulary Hierarchical 3D Scene Graphs in Large-Scale Outdoor Environments

1.0.1 environment.yml

Size: 3 MB - Last synced: 4 days ago - Pushed: 4 days ago

guanguanboy/SHT-Net

0.9.0 environment.yaml

Size: 1.75 MB - Last synced: 24 days ago - Pushed: 24 days ago

memavl/project

0.9.0 environment.yml

Size: 64.5 KB - Last synced: about 2 months ago - Pushed: 7 months ago

hasibzunair/RSUD20K

RSUD20K: A Dataset for Road Scene Understanding In Autonomous Driving

1.0.1 environment.yml

Size: 140 MB - Last synced: 2 months ago - Pushed: 2 months ago

ATotor/Stage_Chevalet_PITON

1.0.1 environment.yml

Size: 31.1 MB - Last synced: about 2 months ago - Pushed: about 2 months ago

LynLinqiLu/Low_Level_Visual

1.0.1 environment.yml

Size: 97.7 KB - Last synced: about 2 months ago - Pushed: about 2 months ago

cpjobling/eg-150-textbook

Course notes for the course EG-150 Signals and Systems

1.0.1 environment.yml

Size: 161 MB - Last synced: about 2 months ago - Pushed: about 2 months ago

datagora-erasme/itineraire_fraicheur

Projet ERASME en partenariat avec la métropole de Lyon dont l'objectif est le calcul d'itinéraires piétons prenant en compte la dimension fraîcheur du trajet