Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

Package Usage: conda: openjdk

JetBrains Runtime is a runtime environment for running IntelliJ Platform based products on Windows, Mac OS X, and Linux
3 versions
Latest release: over 2 years ago
5 dependent packages

View more package details: https://packages.ecosyste.ms/registries/anaconda.org/packages/openjdk

View more repository details: https://repos.ecosyste.ms/hosts/GitHub/repositories/JetBrains%2FJetBrainsRuntime

Dependent Repos 192

rjof/coronavirus_dashboard_mexico
Fork of https://github.com/RamiKrispin/coronavirus_dashboard with minimal tweaks for Mexico
  • 8.0.152 environment.yml

Size: 12.8 MB - Last synced: 5 months ago - Pushed: over 1 year ago

rjof/rjof.github.io
Personal projects
  • 8.0.152 docs/environment.yml
  • 8.0.152 environment.yml

Size: 38.5 MB - Last synced: 5 months ago - Pushed: over 1 year ago

ome/omero-guide-r
  • 11.* binder/environment.yml

Size: 2.01 MB - Last synced: 29 days ago - Pushed: about 1 year ago

ifremer-bioinformatics/samba
Standardized and Automated MetaBarcoding Analyses workflow (Mirror)
  • 11.0.1 containers/qiime2-2019.10/environment.yml

Size: 109 MB - Last synced: 11 months ago - Pushed: 11 months ago

bsbtd/Teste
  • 8.0.192.* proteomicslfq/environment.yml

Size: 535 MB - Last synced: 8 days ago - Pushed: 8 days ago

iossifovlab/gpf
GPF: Genotypes and Phenotypes in Families
  • 8.0.312.* environment.yml

Size: 75.3 MB - Last synced: 30 days ago - Pushed: about 1 month ago

brucemoran/tumour_only
Tumour-only DNA sequencing analysis
  • 8.0.282 environment.yaml

Size: 58.6 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

btmartin721/ClineHelpR
Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clines and hybrid indices with Environmental Variables
  • 11.0.9.1 environment.yml

Size: 93.4 MB - Last synced: 7 months ago - Pushed: almost 2 years ago

johsr/gwas-regenie Fork of genepi/nf-gwas
A nextflow pipeline to perform whole genome regression modelling using regenie.
  • 17.0.3.* environment.yml

Size: 43.4 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

brsynth/rp2paths
RetroPath2.0 to pathways
  • environment.yaml

Size: 5.33 MB - Last synced: 25 days ago - Pushed: 7 months ago

lukfor/pgs-repository-builder
This repository is a collection of Nextflow pipelines to create PGS repositories for PGS-Server or pgs-calc.
  • 11.0.9.1.* environment.yml

Size: 2.52 MB - Last synced: 8 months ago - Pushed: over 1 year ago

sbl-sdsc/mmtf-workshop-2018
Structural Bioinformatics Training Workshop & Hackathon 2018
  • 8.0.152.* binder/environment.yml
  • 8.0.152.* environment.yml

Size: 369 MB - Last synced: 7 months ago - Pushed: almost 2 years ago

JetBrains-Research/snakecharm
Plugin for PyCharm / IntelliJ IDEA Platform IDEs which adds support for Snakemake language.
  • 8.* testData/wrappers_storage/bio/gatk/applybqsr/environment.yaml

Size: 2.81 MB - Last synced: 2 days ago - Pushed: 2 days ago

ccmbioinfo/crg2
Research pipeline for exploring clinically relevant genomic variants
  • 8.* wrappers/gatk/baserecalibrator/environment.yaml

Size: 4.48 MB - Last synced: 5 days ago - Pushed: 5 days ago

andrewkern/analysis2 Fork of popsim-consortium/analysis2
Analysis for the second consortium paper.
  • environment.yml

Size: 6.57 MB - Last synced: 6 months ago - Pushed: 6 months ago

afuentri/B-MyRepCLL
pipeline for a consensus-oriented analysis of B-cell clones
  • 11.0.13 environment.yml

Size: 291 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

casrssk/WGS-analysis-in-C_trachomatis
  • 8.0.112 linux/sample/envs/environment.yml
  • 8.0.192 mac/samples/envs/environment.yml

Size: 7.39 MB - Last synced: 4 months ago - Pushed: about 2 years ago

jseeman/publication-supplements
Code and data for research replication and reuse
  • 11.0.13 2022_arsia/environment.yaml

Size: 511 KB - Last synced: about 1 year ago - Pushed: about 2 years ago

admixVIE/iNEAL
Introduction to Neanderthal palaeogenomic analyses for non-geneticists
  • environment.yml

Size: 169 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago

tdayris/snakemake-wrappers Fork of snakemake/snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see
  • 8.* bio/gatk/markduplicatesspark/environment.yaml

Size: 735 MB - Last synced: 5 days ago - Pushed: 6 days ago

EpiDiverse/wgbs
The EpiDiverse Whole Genome Bisulfite Sequencing Pipeline, implemented with Nextflow
  • 11.0.8.* env/environment.yml

Size: 31.4 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago

villegar/DoGE
Differential Gene Expression Analysis Pipeline
  • 11.0.1.* environment.yml

Size: 16 MB - Last synced: 9 months ago - Pushed: almost 3 years ago

hivlab/virome-wrappers
snakemake wrappers
  • 8.0.152.* bbtools/bbduk/environment.yaml
  • 8.0.152.* bbtools/bbmerge/environment.yaml
  • 8.0.152.* bbtools/bbnorm/environment.yaml
  • 8.0.152.* bbtools/callvariants/environment.yaml
  • 8.0.152.* bbtools/clumpify/environment.yaml
  • 8.0.152.* bbtools/filterbytile/environment.yaml
  • 8.0.152.* bbtools/reformat/environment.yaml
  • 8.0.152.* bbtools/repair/environment.yaml
  • 8.0.152.* bbtools/tadpole/environment.yaml
  • 8.* gatk/fastaalternatereferencemaker/environment.yaml
  • 8.* gatk/indexfeaturefile/environment.yaml
  • 8.0.152.* preprocess/environment.yaml
  • 8.0.152.* unmapped/environment.yaml

Size: 30.5 MB - Last synced: about 1 year ago - Pushed: about 2 years ago

russHyde/russ-hyde
Public content for my blog
  • 8.0.192.* envs/environment.yaml

Size: 5.17 MB - Last synced: about 1 year ago - Pushed: about 3 years ago

ribosomeprofiling/riboflow
Pipeline for Ribosome Profiling Data
  • 8.* environment.yaml

Size: 246 KB - Last synced: about 2 months ago - Pushed: 10 months ago

OSU-BMBL/PGRP-Grape-Grafting
Adapting Perennial Crops for Climate Change: Graft Transmissible Effects of Rootstocks on Grapevine Shoots
  • 11.0.8 environment.yml

Size: 2.22 MB - Last synced: 7 days ago - Pushed: about 3 years ago

luisacusick/VC-Optimus
Bioinformatics pipeline to take short reads, align them to a reference, and call SNPs.
  • 8.0.152 environment.yml

Size: 138 KB - Last synced: about 1 year ago - Pushed: about 3 years ago

lfnothias/qiime2
  • 11.0.8.* environment.yml

Size: 21.5 KB - Last synced: about 1 year ago - Pushed: over 3 years ago

rchapman2000/de-novo-assembly-pipeline
  • 8.0.332 environment.yml

Size: 60.5 KB - Last synced: about 1 year ago - Pushed: about 1 year ago

CarolinaPB/polish-assembly-shortreads
Polish assembly with short reads
  • 11.0.8 environment.yml

Size: 35.2 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago

Youth-Academy-DNA/week2
Materials for week 2
  • 8.0.332 environment.yml

Size: 14 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago

KKtiandao/f4pga-arch-defs Fork of f4pga/f4pga-arch-defs
FOSS architecture definitions of FPGA hardware useful for doing PnR device generation.
  • environment.yml

Size: 8.75 MB - Last synced: about 1 year ago - Pushed: about 1 year ago

matthuska/biasviz
BiasViz is a Java applet for visualization of amino acid bias in multiple sequence alignments.
  • 11.0.8.* environment.yml

Size: 288 KB - Last synced: 7 months ago - Pushed: about 3 years ago

zillow/zdatasets
Dataset SDK for consistent read/write [batch, online, streaming] data.
  • 8.* binder/environment.yml

Size: 494 KB - Last synced: 2 days ago - Pushed: 5 days ago

broadinstitute/malaria-amplicon-pipeline
  • 11.0.8.* environment.yml

Size: 171 KB - Last synced: about 1 year ago - Pushed: about 1 year ago

bihealth/digestiflow-demux
:spaghetti: Digestiflow Demultiplexing Tool
  • 8.0.144 digestiflow_demux/wrappers/fastqc/environment.yaml

Size: 159 KB - Last synced: 27 days ago - Pushed: about 2 years ago

evoosa/16S_bacteria_detector
Gets the frequency of bacterias for 16S RRNA sequences using the available algorithms
  • 11.0.8 src/environment.yml

Size: 97.4 MB - Last synced: about 1 year ago - Pushed: about 3 years ago

Wiselab2/NGPINT
  • 8.0.152 environment.yml

Size: 300 MB - Last synced: 7 months ago - Pushed: over 2 years ago

manuelconst/WES-Somatic-Variant-Calling
LTO WES Workflow
  • 8.* environment.yaml

Size: 711 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago

edotau/fishingcluster
  • 10.0.2 workflows/atacseq/environment.yml

Size: 3.74 MB - Last synced: about 1 year ago - Pushed: about 3 years ago

eresearchqut/VirReport
  • 11.0.9.1.* environment.yml

Size: 17.3 MB - Last synced: 29 days ago - Pushed: 3 months ago

yfukai/pycziutils 📦
A tiny utility module to parse Zeiss CZI files in Python through python-bioformats.
  • environment.yaml

Size: 8.73 MB - Last synced: 25 days ago - Pushed: over 2 years ago

VIDA-NYU/domain_discovery_API 📦
Domain Discovery Operations API formalizes the human domain discovery process by defining a set of operations that capture the essential tasks that lead to domain discovery on the Web as we have discovered in interacting with the Subject Matter Experts (SME)s.
  • 8.0.152 environment.yml

Size: 1.23 MB - Last synced: 8 months ago - Pushed: almost 3 years ago

cibinsb/snakemake-wrappers Fork of snakemake/snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see
  • 8.* bio/gatk/printreadsspark/environment.yaml
  • 8.* bio/gatk/applybqsr/environment.yaml
  • 8.* bio/gatk/applybqsrspark/environment.yaml
  • 8.* bio/gatk/baserecalibrator/environment.yaml
  • 8.* bio/gatk/baserecalibratorspark/environment.yaml
  • 8.* bio/gatk/markduplicatesspark/environment.yaml

Size: 217 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

imagej/napari-imagej
Use ImageJ functionality from napari
  • 8.* environment.yml

Size: 3.87 MB - Last synced: 3 days ago - Pushed: 8 months ago

stanford-ccb/ccb 📦
Convenience functions and scripts to support species distribution modeling (SDM), including a python wrapper for MaxEnt
  • environment.yml

Size: 734 KB - Last synced: 7 months ago - Pushed: almost 2 years ago

copa-uniandes/PAD-web-tutorials Fork of MantiMantilla/LCA-web-tutorials
This repo holds an automated process that publishes to the web all python for analytics tutorials and readings courses dedicated to programming for data analytics.
  • binder/environment.yml

Size: 130 KB - Last synced: 8 months ago - Pushed: 8 months ago

phylo42/PEWO
Phylogenetic Placement Evaluation Workflows : Benchmark placement software and different reference trees
  • 11.0.1 envs/environment.yaml

Size: 7.82 MB - Last synced: 2 months ago - Pushed: 8 months ago

jgil-sevenbridges/validate_fastqc_multiqc_nf2
  • 11.0.9.1.* environment.yml

Size: 139 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago

ExaWorks/SDK
ExaWorks SDK
  • 8.* docker/base/scripts/environment.yml

Size: 1.42 MB - Last synced: 27 days ago - Pushed: 3 months ago

mitoNGS/MToolBox_snakemake
MToolBox pipeline written in snakemake to allow a better scalability
  • 8.0.152.* envs/environment.yaml

Size: 2.17 MB - Last synced: about 1 year ago - Pushed: about 2 years ago

faircloth-lab/illumiprocessor
pre-process illumina reads
  • 11.0.8.* etc/environment.yml

Size: 161 KB - Last synced: 11 days ago - Pushed: over 1 year ago

Ninomoriaty/m6APipe
  • 10.0.2 environment.yml

Last synced: about 1 year ago

earth-chris/earth-tools
My personal repository of functions and classes for image processing and ecological analysis
  • environment.yml

Size: 319 KB - Last synced: 26 days ago - Pushed: over 3 years ago

kelly-sovacool/meta-repo
A meta-repository to organize my public projects.
  • 8.0.192 config/environment.yml

Size: 33.2 MB - Last synced: 9 months ago - Pushed: 9 months ago

canceromics/MeRIPseqPipe
MeRIPseqPipe：An integrated analysis pipeline for MeRIP-seq data based on Nextflow.
  • 8.0.192.* environment.yml

Size: 38 MB - Last synced: 7 months ago - Pushed: about 2 years ago

lcdb/lcdb-wf
Robust, tested workflows for RNA-seq, ChIP-seq and other high-throughput sequencing analysis
  • >=8.0.144 wrappers/wrappers/fastqc/environment.yaml

Size: 4.18 MB - Last synced: 1 day ago - Pushed: 2 days ago

aw236/boilerplate_code
best functions
  • 8.0.152.* environment.yml

Size: 380 KB - Last synced: 26 days ago - Pushed: 12 months ago

microgenlab/porefile
A Nextflow full-length 16S profiling pipeline for ONT reads
  • 11.0.9.1.* environments/environment.yml

Size: 7.57 MB - Last synced: 6 months ago - Pushed: 6 months ago

dimitrisokolowskei/rnaseq_snakemake
  • 11.0.13 environment.yaml

Size: 113 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago

andrealauria104/ngsRtools
A Suite of R Packages for NGS-based Epigenomic Data Analysis.
  • 8.0.152.* data/environment.yml

Size: 714 KB - Last synced: 26 days ago - Pushed: about 1 year ago

sadamov/pollenmaps
Creating some nice maps in R
  • 11.0.9.1 environment.yml

Size: 79.6 MB - Last synced: about 1 year ago - Pushed: over 2 years ago

bokulich-lab/advanced-comp-bio-tutorial
Hands-on demonstration of 16S rRNA gene sequence analysis for SysBio Advanced Block Course 2022
  • 11.0.1 environment.yml

Size: 77.9 MB - Last synced: 12 months ago - Pushed: 12 months ago

marcellocostamagna/DENOPTIM_documentation Fork of denoptim-project/DENOPTIM
DENOPTIM is a software package for de novo design and virtual screening of functional molecules of any kind.
  • 11.0.* environment.yml

Size: 164 MB - Last synced: 6 months ago - Pushed: over 1 year ago

Bernt/MITOS
MITOS
  • 11.0.9.1.* environment.yaml

Last synced: 13 days ago

marco-foscato/DENOPTIM Fork of denoptim-project/DENOPTIM
DENOPTIM is a software package for de novo design and virtual screening of functional molecules of any kind.
  • 11.0.* environment.yml

Size: 165 MB - Last synced: about 1 year ago - Pushed: about 1 year ago

dolphinnext/indrop
  • 11.0.9.1.* environment.yml

Size: 652 KB - Last synced: about 1 year ago - Pushed: about 2 years ago

omicsclass/biodocker
docker images for bioinformatics
  • 11.0.8.* ampliseq-q2/environment.yml

Size: 59.2 MB - Last synced: 11 months ago - Pushed: over 1 year ago

russHyde/code_as_data
Analysis of code in R dev packages (for a planned talk)
  • 11.0.9.1.* conda/environment.yml

Size: 295 KB - Last synced: 3 months ago - Pushed: 7 months ago

jiangweiyao/RefNAAP
Reference based Nanopore assembly analysis pipeline
  • 11.0.8.* environment.yml

Size: 76.4 MB - Last synced: 27 days ago - Pushed: about 3 years ago

sahanmar/orchid
  • environment.yml

Size: 4.81 MB - Last synced: 6 months ago - Pushed: 6 months ago

sdsc-hpc-students/REHS2022
  • 11.0.1.* Jack-Karpinski-REHS/environment.yml

Size: 37.7 MB - Last synced: 3 months ago - Pushed: 3 months ago

sbl-sdsc/mmtf-genomics
Methods for mapping genomic data onto 3D protein structure.
  • 8.0.152.* binder/environment.yml
  • 8.0.152.* environment.yml

Size: 6.17 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago

lazyky/meripseqpipe
MeRIP-seq analysis pipeline arranged multiple alignment tools, peakCalling tools, Merge Peaks' methods and methylation analysis methods.
  • 8.0.192.* environment.yml

Size: 520 KB - Last synced: 7 months ago - Pushed: almost 3 years ago

ome/omero-guide-orbit
  • binder/environment.yml

Size: 2.34 MB - Last synced: 29 days ago - Pushed: about 1 year ago

sbl-sdsc/mmtf-pyspark
Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.
  • 8.0.152.* binder/environment.yml
  • 8.0.152.* environment.yml

Size: 524 MB - Last synced: 15 days ago - Pushed: about 1 year ago

kirbyvisp/marmo
MARMO is a Modular and Robust pipeline for iMmune single-cell multi-Omics implemented in Snakemake.
  • 8.0.121 environment.yaml

Size: 2.86 MB - Last synced: over 1 year ago

kirbyvisp/vdjpuzzle
  • 8.0.121.* environment.yml

Size: 37.8 MB - Last synced: over 1 year ago