Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

Package Usage: conda: perl-yaml

View more package details: https://packages.ecosyste.ms/registries/anaconda.org/packages/perl-yaml

Dependent Repos 15

brucemoran/tumour_only
Tumour-only DNA sequencing analysis
  • 1.29 environment.yaml

Size: 58.6 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

kircherlab/CADD-scripts
CADD scripts release for offline scoring. For more information about CADD, please visit our website
  • 1.29 envs/environment.yml

Size: 2.02 MB - Last synced: 15 days ago - Pushed: about 1 month ago

ComparativeGenomicsToolkit/Comparative-Annotation-Toolkit
  • 1.29.* environment.yaml

Size: 15.3 MB - Last synced: 2 months ago - Pushed: 2 months ago

ressy-group/examples/example-sonar
Example using SONAR for antibody lineage analysis
  • environment.yml

Last synced: over 1 year ago

ctlab/GScour
Genome-wide detection of positive selection
  • 1.29 environment.yml

Size: 1.89 MB - Last synced: 17 days ago - Pushed: 12 months ago

rwanwork/sam2irs
sam2irs is a program for calculating intron retention scores (IRS') using input in the sequence alignment/map (SAM) format.
  • 1.29 environment.yml

Size: 155 KB - Last synced: over 1 year ago - Pushed: almost 2 years ago

BackofenLab/CRISPRtracrRNA
  • 1.29 environment.yml

Size: 28.6 MB - Last synced: over 1 year ago - Pushed: over 1 year ago

computational-chemical-biology/cis_reg
  • 1.30 environment.yml

Size: 16.2 MB - Last synced: over 1 year ago - Pushed: over 1 year ago

SteMIDIfactory/P-DOR
Quick and easy outbreak reconstruction pipeline
  • 1.30 environment.yml

Size: 37.7 MB - Last synced: 3 months ago - Pushed: 8 months ago

duncanberger/nxf-BATQual
Bacterial genome assembly, annotation and typing pipeline.
  • 1.30 environment.yaml

Size: 321 KB - Last synced: 10 months ago - Pushed: 10 months ago

IanSudbery/alvarez_et_al
Code and other scripts for Alvarez-Beneyas et al 2020
  • 1.29 environment.yml

Size: 41.2 MB - Last synced: 10 months ago - Pushed: over 2 years ago

bioinformatics-lab/scratch
  • 1.18 environment.yml

Size: 10.8 MB - Last synced: over 1 year ago - Pushed: about 6 years ago

bioinformatics-lab/BioDragon
  • 1.18 environment.yml

Size: 10.9 MB - Last synced: over 1 year ago - Pushed: over 6 years ago

Hajibabaei-Lab/SCVUC_COI_metabarcode_pipeline
Snakemake bioinformatic pipeline to process COI mtDNA metabarcodes
  • 1.29 environment.yml

Size: 352 KB - Last synced: about 1 year ago - Pushed: almost 4 years ago

bfairkun/Comparative_eQTL
Primary data: Chimp eQTLs called from heart tissue samples
  • 1.27 code/snakemake_workflow/envs/environment.yml

Size: 583 MB - Last synced: 10 months ago - Pushed: over 3 years ago

jackkamm/snippy-false-negatives
  • 1.27 environment.yaml

Size: 4.88 KB - Last synced: over 1 year ago - Pushed: over 5 years ago

yangmqglobe/depipe
自动化的 ChIP-Seq 分析流程
  • 1.29.* environment.yml

Size: 16.7 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

asdcid/Genome_Assembly_Assessment
  • 1.27 environment.yml

Size: 39.4 MB - Last synced: over 1 year ago - Pushed: over 4 years ago

AbeelLab/long-read-assembly-benchmark
  • 1.30 environment.yml

Size: 7.68 MB - Last synced: about 2 months ago - Pushed: over 1 year ago

ErasmusMC-Bioinformatics/WeFaceNano
Nanopore plasmid pipeline (FAST5 basecalling, assembly, plasmid identification and antimicrobial resistance genes identification).
  • 1.29 environment.yml

Size: 6.78 MB - Last synced: 2 months ago - Pushed: about 3 years ago

jhgille2/Transcriptome-length-discrepency-tool
Some code to (hopefully) help to resolve an issue where sequences in a BAM/SAM header have a different length indicated than what is indicated in both a gtf file and transcriptome file used in a common pipeline
  • 1.30 environment.yml

Size: 32.2 KB - Last synced: about 1 year ago - Pushed: about 1 year ago

telatin/sequence-formats
  • 1.29 libraries/perl/environment.yaml

Size: 31.3 KB - Last synced: over 1 year ago - Pushed: over 2 years ago

xie186/ViewBS
ViewBS - a powerful toolkit for visualization of high-throughput bisulfite sequencing data
  • environment.yaml

Size: 7.55 MB - Last synced: 7 months ago - Pushed: 12 months ago

BitaoQiu/Comparative-Annotation-Toolkit Fork of ComparativeGenomicsToolkit/Comparative-Annotation-Toolkit
  • 1.29.* environment.yaml

Size: 15.3 MB - Last synced: 11 months ago - Pushed: over 3 years ago

philge/Comparative-Annotation-Toolkit Fork of ComparativeGenomicsToolkit/Comparative-Annotation-Toolkit
  • 1.29.* environment.yaml

Size: 15.2 MB - Last synced: 10 months ago - Pushed: almost 3 years ago

ZarnackGroup/Calcifer
  • 1.30 environment.yml

Size: 896 KB - Last synced: about 2 months ago - Pushed: 6 months ago

snizam001/greenPipes
  • 1.30 environment.yaml

Size: 889 KB - Last synced: 17 days ago - Pushed: 17 days ago

yanhui-k/AnnoSmk
annotation base on snakemake
  • 1.29 config/environment.yaml

Size: 34 MB - Last synced: 7 days ago - Pushed: 7 days ago