Ecosyste.ms: Repos
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Package Usage: conda: pydicom
pydicom is a pure python package for parsing DICOM files. DICOM is a standard (https://dicomstandard.org) for communicating medical images and related information such as reports and radiotherapy objects. pydicom makes it easy to read these complex files into natural pythonic structures for easy manipulation. Modified datasets can be written again to DICOM format files. See the `Getting Started <https://pydicom.github.io/pydicom/stable/>`_ page for installation and basic information, and the `Pydicom User Guide
18 versions
Latest release: over 1 year ago
26 dependent packages
View more package details: https://packages.ecosyste.ms/registries/anaconda.org/packages/pydicom
View more repository details: https://repos.ecosyste.ms/hosts/GitHub/repositories/pydicom%2Fpydicom
Dependent Repos 41
IMTtugraz/PySeus
PySeus is a simple viewer for MRI data written in Python and licensed under the MIT License.- environment.yml
Size: 80.4 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago
AI-hub-keskisuomi/AI_hub_keskisuomi
- 2.2.* WP3_knee_osteoarthritis/Knee Segmentation/environment.yml
Size: 110 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
mengweiren/longitudinal-representation-learning
- 2.3.0 environment.yml
Size: 55.7 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
myousif9/smk_extract_gradients
- 2.2.0 smk_extract_gradients/workflow/envs/environment.yml
Size: 396 KB - Last synced: 10 months ago - Pushed: over 2 years ago
kylewang1999/Blood_cell_classification_kaggle
- cluster/environment.yml
Size: 795 MB - Last synced: about 1 year ago - Pushed: over 2 years ago
alasdairrutherford/dicom-plan-tutorial
- environment.yml
Size: 1.22 MB - Last synced: 7 months ago - Pushed: 7 months ago
now-i-know-my-abcd/docs
Static site to host Now I Know My ABCD data use and code tutorials. Community contributions welcome!- 2.3.0 environment.yml
Size: 5.31 MB - Last synced: 8 days ago - Pushed: 9 days ago
prediction2020/arterial_vessel_measures
This repo contains the code for our framework simulating errors for the assessment of the optimal measures for arterial brain vessel segmentation- 2.1.0 environment.yml
Size: 62.5 KB - Last synced: about 1 year ago - Pushed: about 3 years ago
Matt-Conrad/DicomToDatabase
Script that moves all desired DCM tag-values from a directory full of DCMs into a PostgreSQL DB table.- 1.3.0.* misc/environment.yml
Size: 82.4 MB - Last synced: 15 days ago - Pushed: over 3 years ago
salusanga/alm-dnn
Constrained Optimization to Train Neural Networks on Critical and Under-Represented Classes [NeurIPS2021]- 2.0.0 environment.yml
Size: 36.1 KB - Last synced: 8 months ago - Pushed: 8 months ago
nl3769/caroSegDeep
Arterial wall segmentation on ultrasound image sequences using deep learning.- 2.2.2 environment.yml
Size: 3.73 MB - Last synced: 3 days ago - Pushed: almost 2 years ago
adamjberg/eCXRsize
- 1.4.2 environment.yml
Size: 3.99 MB - Last synced: about 1 month ago - Pushed: over 1 year ago
mrsiegfried/SiegVent2023-Geology
Repo for processing and plotting data for Siegfried*, Venturelli*, et al. (2023), Geology- 2.1.2.* environment.yml
Size: 67 MB - Last synced: 8 days ago - Pushed: about 1 year ago
mallelaan/brain_development
Brain Development Project- 1.2.2 environment.yml
Size: 2.39 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
McSpooder/camull-net
A 3D convolutional neural network for the classification of Alzheimer's disease and its precursor Mild Cognitive Impairement.- 2.2.2 environment.yml
Size: 4.13 MB - Last synced: 8 months ago - Pushed: 8 months ago
mengweiren/q-space-conditioned-dwi-synthesis
- 2.1.2 environment.yml
Size: 86.9 MB - Last synced: about 1 year ago - Pushed: over 2 years ago
microsoft/fastmri-plus
Data labels and scripts for fastMRI.org- environment.yml
Size: 380 KB - Last synced: about 1 month ago - Pushed: over 2 years ago
raniere-phd/racehorse-radiographs-data-labeling
https://raniere-phd.gitlab.io/racehorse-radiographs-data-labeling/- 2.2.2 environment.yml
Last synced: over 1 year ago
KibromBerihu/ai4elife
This data-centric AI repository implements a robust deep learning method (LFBNet) for fully automated tumor segmentation in whole-body [18]F-FDG PET/CT images.- 1.2.0.* environment.yml
Size: 35.3 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
jcreinhold/lesionseg
Modified version of 2.5D Tiramisu MS lesion segmentation- 2.0.0 environment.yaml
Last synced: about 1 year ago
engs1258/biomedical-image-analysis-notebooks
- environment.yml
Size: 171 MB - Last synced: 12 months ago - Pushed: 12 months ago
brainiak/rt-cloud
The Realtime fMRI Cloud Framework is an open-source software package that makes it easier to build and deploy real-time fMRI experiments.- environment.yml
Size: 17.9 MB - Last synced: about 1 month ago - Pushed: 11 months ago
nalinimsingh/interlacer
Joint Frequency and Image Space Learning for MRI Reconstruction and Analysis- 2.0.0 environment.yml
Size: 24.3 MB - Last synced: 8 months ago - Pushed: over 1 year ago
AmirSh15/graph_emotion_recognition
- 1.3.0 environment.yml
Size: 1.86 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
harrivle/ark
- 2.3.0 environment.yml
Size: 1.74 MB - Last synced: 12 months ago - Pushed: over 1 year ago
numediart/Attention-EEG
- 2.0.0 environment.yml
Size: 204 MB - Last synced: about 2 months ago - Pushed: over 1 year ago
jeewangue/dotfiles
personal dot files- envs/conda/environment.yml
Size: 17 MB - Last synced: 2 months ago - Pushed: 2 months ago
kmboehm/onco-fusion
- 2.1.2 ct-feature-extraction/environment.yml
Size: 77.7 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
Jinwei1209/LARO
Deep Learning K-space Recon Project- 2.0.0 environment.yml
Size: 255 MB - Last synced: 6 months ago - Pushed: about 1 year ago
EmreTaha/TINC
TINC (MICCAI 2022) official code- 2.1.2 environment.yml
Size: 30.3 KB - Last synced: 4 months ago - Pushed: over 1 year ago
yehonathanJacob/yjacob
- 0.9.9 PythonLab/ExperienceInCompanis/Aidoc/aidoc-viewer/docker/demo-base/environment.yml
- 0.9.9 PythonLab/ExperienceInCompanis/Aidoc/aidoc-viewer/environment.yml
Size: 12.6 MB - Last synced: 12 months ago - Pushed: 12 months ago
DCAN-Labs/AlexNet_Abrol2021 Fork of aabrol/SMLvsDL
- 2.1.2 environment.yml
Size: 55.5 MB - Last synced: 8 months ago - Pushed: 12 months ago
neel-dey/Atlas-GAN
[ICCV 2021] Generative Adversarial Registration for Improved Conditional Deformable Templates- 2.0.0 environment.yml
Size: 265 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
ericabusch/rt-cloud Fork of brainiak/rt-cloud
- environment.yml
Size: 46.3 MB - Last synced: 4 months ago - Pushed: 6 months ago
thucdx/TSleep
Automated Sleep Stage Scoring using Deep Learing- 2.1.2 environment.yml
Size: 438 KB - Last synced: about 1 month ago - Pushed: about 3 years ago
wanderine/ABIDE_classifier
- 2.0.0 environment.yml
Size: 9.77 KB - Last synced: 10 months ago - Pushed: over 3 years ago
wanderine/BrainTumourSegmentationqMRI
- 2.0.0 environment.yml
Size: 26.4 KB - Last synced: 10 months ago - Pushed: over 3 years ago
tcoroller/pGAN
A Deep Learning Approach to Private Data Sharing of Medical Images Using Conditional GANs- environment.yml
Size: 9.83 MB - Last synced: about 1 year ago - Pushed: almost 3 years ago
oliverchampion/DCENET
Neural networks for fitting DCE data- 2.1.2 environment.yml
Size: 39.1 KB - Last synced: 10 months ago - Pushed: about 2 years ago
TimO96/DCE-NET
Framework for estimating DCE-MRI physiological parameters- 2.1.2 environment.yml
Size: 2.41 MB - Last synced: 10 months ago - Pushed: over 2 years ago
felix11h/docker-reproduction-of-published-images
Here I test whether Dockerfiles which were published as part of a research article can still be compiled some time later after publication.- 0.9.9 Ghosh_2017/environment.yml
Size: 1.01 MB - Last synced: 10 months ago - Pushed: over 6 years ago
hansenms/fastmri-dicom
DICOM tools for fastMRI- 2.1.2.* environment.yml
Size: 1.08 MB - Last synced: 9 months ago - Pushed: about 3 years ago
ivoflipse/gdcmtest
- environment.yml
Size: 17.5 MB - Last synced: about 1 year ago - Pushed: over 8 years ago
sara-nl/3D-VQ-VAE-2
3D VQ-VAE-2 for high-resolution CT scan synthesis- 2.2.2 environment.yml
Size: 6.9 MB - Last synced: about 1 year ago - Pushed: over 2 years ago
ReproNim/simple_workflow
A very simple, re-executable neuroimaging publication (code)- 0.9.9 environment.yml
Size: 2.91 MB - Last synced: about 1 month ago - Pushed: over 2 years ago
lukaslang/plug-and-play-bregman-iteration
- environment.yml
Size: 150 KB - Last synced: about 1 year ago - Pushed: about 4 years ago
kuoweilai/img_seg
- 1.2.2 environment.yml
Size: 13.7 KB - Last synced: 8 months ago - Pushed: about 4 years ago
zhoji/verteseg
Get DICOM masks of vertebrae from sagittal IDEAL (Iterative Decomposition of water and fat with Echo Asymmetric and Least-squares estimation) spine MR images- 1.3.0 environment.yml
Size: 156 MB - Last synced: 8 months ago - Pushed: almost 4 years ago
HuifangWang/VEP_atlas_shared
We will share this repository about our VEP atlas with community when our paper is out.- 2.0.0 environment.yml
Size: 4.14 MB - Last synced: 2 months ago - Pushed: 2 months ago
KatherLab/swarm-learning-hpe
Experimental repo for Odelia project based on HPE platform. This repo contains multiple models for histopathology and radiology training.- workspace/odelia-breast-mri/env_config/environment.yaml
Size: 217 MB - Last synced: 9 days ago - Pushed: 10 days ago
chrischute/papers
Papers for Summer 2018- 1.0.2.* 02-normalization/code/environment.yml
Size: 255 MB - Last synced: about 1 year ago - Pushed: over 5 years ago
rtrhd/fbirnphantom2018
Analysis of Gel phantom parameters at CRICBristol- environment.yml
Size: 9.24 MB - Last synced: 7 months ago - Pushed: over 5 years ago
enricobertolotti/RaMResearch
Repository for the Computer vision problem finding an object in 3D ultrasound files- 2.0.0 environment.yml
Size: 1.75 GB - Last synced: 10 months ago - Pushed: over 3 years ago
zoeis52/CSE481_spectrogram_example
Example code for creating spectrograms from EEG data- 2.1.2 environment.yml
Size: 31.3 KB - Last synced: about 1 month ago - Pushed: about 3 years ago
Meta-VCI-Map/LSMviewer
- 2.2.2 environment.yml
Size: 7.21 MB - Last synced: about 1 month ago - Pushed: over 2 years ago
Graduation-project-SBME-2023/liver-imaging-analysis
Deep learning methods for liver imaging analysis- 2.3.1 environment.yml
Size: 332 MB - Last synced: 15 days ago - Pushed: 15 days ago
sasank-desaraju/Fistula-Segmentation
Segmenting fistulae from abdominal CT scans- 2.3.1 environment.yml
Size: 5.85 MB - Last synced: about 1 month ago - Pushed: 6 months ago
lorifranke/SlicerTMS
Extension in 3DSlicer for visualization of TMS- 2.3.0 environment.yml
Size: 217 MB - Last synced: about 1 month ago - Pushed: 5 months ago
Bonelab/Bonelab
Collection of utility software from the Bone Imaging Laboratory- 1.4.2 environment.yml
Size: 911 KB - Last synced: 2 days ago - Pushed: 3 days ago
qbicsoftware/etl-scripts
ETL scripts written in Jython 2.7 for openBIS dropboxes.- 0.9.9 drop-boxes/register-imaging-dropbox/environment.yml
Size: 20.9 MB - Last synced: about 1 month ago - Pushed: 5 months ago
Isik-lab/SIfMRI_analysis
Analysis scripts for SIfMRI project- 2.3.0 environment.yml
Size: 199 MB - Last synced: 4 months ago - Pushed: 4 months ago
mercure-imaging/mercure-dcm2bids
Module to run dcm2bids conversion in mercure.- environment.yml
Size: 2.06 MB - Last synced: 2 months ago - Pushed: 4 months ago
jhernandezga/CT_Reconstruction_LEARN_paper
Implementation of the paper LEARN: Learned Experts’ Assessment-based Reconstruction Network for Sparse-data CT Hu Chen, Yi Zhang, Yunjin Chen, et. al- 2.4.2.* environment.yml
Size: 61.5 KB - Last synced: 4 months ago - Pushed: 4 months ago
biomedisa/hernia-repair
- 2.3.1 environment.yml
Size: 8.06 MB - Last synced: about 2 hours ago - Pushed: about 12 hours ago
ABra1993/tAdaptation_ECoG
- 2.2.2 environment.yml
Size: 53.4 MB - Last synced: 15 days ago - Pushed: 15 days ago
EntPyle/Py3_BoneMat
Python3 version of py_bonemat_abaqus that works with ansys inputs and outputs.- environment.yml
Size: 854 KB - Last synced: about 2 months ago - Pushed: about 2 months ago
ezgiogulmus/OViTANet
Ovarian Cancer Survival Prediction- 2.3.1 environment.yaml
Size: 18.7 MB - Last synced: about 1 month ago - Pushed: about 2 months ago
LechengKong/OneForAll
A fundational graph learning framework that solves cross-domain/cross-task classification problems using one model.- 2.4.1 environment.yml
Size: 66.6 MB - Last synced: about 1 month ago - Pushed: about 1 month ago
stmharry/deepopg-off-the-shelf
This repository implements DeepOPG with mostly off-the-shelf components- 2.4.4 environment.yaml
Size: 1 MB - Last synced: 9 days ago - Pushed: 15 days ago
BBSLab-UB/MRIght
MRIght - MRI DICOM management pipeline- 2.4.4 environment.yml
Size: 52.7 KB - Last synced: about 1 month ago - Pushed: about 1 month ago
gifale95/eeg_encoding
Use DNNs to build encoding models of EEG visual responses.- 2.2.2 environment.yml
Size: 1.47 MB - Last synced: 6 days ago - Pushed: 6 days ago
ZhenghanFang/DeepSTI-pytorch
- 2.3.0 environment.yml
Size: 23 MB - Last synced: 6 days ago - Pushed: 6 days ago
EugeneTheGreat/MDS22-aneurysm-detection-webapp
A web application used to detect brain aneurysm and segmentation using XAI.- 2.4.4 environment.yml
Size: 78.3 MB - Last synced: about 22 hours ago - Pushed: about 23 hours ago
