Ecosyste.ms: Repos

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Package Usage: conda: pytest-workflow

Configure workflow/pipeline tests using yaml files.
8 versions
Latest release: over 2 years ago

View more package details: https://packages.ecosyste.ms/registries/anaconda.org/packages/pytest-workflow

View more repository details: https://repos.ecosyste.ms/hosts/GitHub/repositories/LUMC%2Fpytest-workflow

Dependent Repos 7

LUMC/hutspot
Multisample DNAseq variant calling pipeline for use in diagnostics
  • >=1.4.0 environment.yml

Size: 5.98 MB - Last synced: 2 months ago - Pushed: over 2 years ago

Redmar-van-den-Berg/snakemake-tssv
  • >=1.4.0 environment.yml

Size: 958 KB - Last synced: about 1 year ago - Pushed: over 2 years ago

openwdl/Testathon-2020
Repo For the WDL Testathon held February 18 - 19, 2020
  • pytest-workflow-tests/environment.yml

Size: 40 KB - Last synced: 2 months ago - Pushed: about 4 years ago

LUMC/PacBio-variantcalling
Variant calling workflow for PacBio HiFi data. Part of the LUMC PGx project.
  • >=1.4 environment.yml

Size: 193 KB - Last synced: 2 months ago - Pushed: over 1 year ago

steamboat/titan-nf
A Nextflow wrapper around Titan-GC. Documentation available at https://steamboat.gitlab.io/titan-nf/
  • 1.5.0.* environment.yml

Last synced: over 1 year ago

Redmar-van-den-Berg/test-umi-deduplication
Test umi deduplication with umi-tools and umi-trie
  • 1.6.0.* environment.yml

Size: 17 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

LUMC/HAMLET
RNA-seq pipeline for AML diagnostics developed in collaboration with the LUMC Hematology department
  • 1.6.0.* environment.yml

Size: 26.9 MB - Last synced: 2 months ago - Pushed: 2 months ago

Redmar-van-den-Berg/crosscheck
Detect sample swaps with Picard CrosscheckFingerprints
  • >=1.4.0 environment.yml

Size: 28.3 KB - Last synced: about 1 year ago - Pushed: over 2 years ago

Redmar-van-den-Berg/HiFi-assembly
Assemble HiFi reads and identify genes of interest
  • >=1.4.0 environment.yml

Size: 2.18 MB - Last synced: 7 months ago - Pushed: over 2 years ago

Redmar-van-den-Berg/compare-aligners
  • >=1.4.0 environment.yml

Size: 3.27 MB - Last synced: about 1 year ago - Pushed: about 3 years ago

Redmar-van-den-Berg/dedup-region
Extract region coverage with and without UMI-deduplication
  • 1.6.0.* environment.yml

Size: 1.69 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago

LUMC/haploblock-combiner
Generate all possible combinations between phased haploblocks
  • 1.6.0.* environment.yml

Size: 88.9 KB - Last synced: 2 months ago - Pushed: about 2 years ago

LUMC/freebayes-snakemake
Short read pipeline using bwa-mem2, freebayes and whatshap to call phased variants
  • 1.6.0.* environment.yml

Size: 980 KB - Last synced: 2 months ago - Pushed: almost 2 years ago

Redmar-van-den-Berg/somatic-RNA-variant-callers
Run multiple somatic RNA variant callers
  • 1.6.0.* environment.yml

Size: 547 KB - Last synced: 12 months ago - Pushed: 12 months ago

Miachol/hamlet
Comprehensive diagnostics of acute myeloid leukemia by whole transcriptome RNA sequencing
  • environment.yml

Size: 8.5 MB - Last synced: about 1 year ago - Pushed: almost 4 years ago

stjudecloud/workflows
Bioinformatics workflows developed for and used on the St. Jude Cloud project.
  • environment.yaml

Size: 9.76 MB - Last synced: 12 days ago - Pushed: 13 days ago

stevekm/nextflow-demos
Example Nextflow pipelines and programming techniques
  • >=1.6 environment.yml

Size: 13.6 MB - Last synced: 15 days ago - Pushed: about 1 month ago

Carovanandel/HLA-typing
  • >=2.0 environment.yml

Size: 31.7 MB - Last synced: about 1 month ago - Pushed: about 1 month ago