Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
Package Usage: conda: r-argparse
R package providing a command line optional and positional argument parser.
10 versions
Latest release: almost 2 years ago
View more package details: https://packages.ecosyste.ms/registries/anaconda.org/packages/r-argparse
View more repository details: https://repos.ecosyste.ms/hosts/GitHub/repositories/trevorld%2Fr-argparse
Dependent Repos 19
vib-singlecell-nf/vsn-pipelines 📦
A repository of pipelines for single-cell data in Nextflow DSL2- 2.0.1.* src/celda/environment.yml
- 2.0.1.* src/harmony/environment.yml
- 2.0.1.* src/soupx/environment.yml
Size: 2.66 MB - Last synced: 8 months ago - Pushed: about 1 year ago
mskcc/helix_filters_01
Workflows for post-pipeline data processing and file generation- 2.0.1.* containers/R-3.5.1/environment.yml
- 2.0.4.* containers/reporting/environment.yml
Size: 4.51 MB - Last synced: 16 days ago - Pushed: about 1 year ago
vib-singlecell-nf/celda 📦
A repository for the celda module of the vib-singlecell-nf pipeline- 2.0.1.* src/celda/environment.yml
Size: 46.9 KB - Last synced: about 1 year ago - Pushed: over 3 years ago
mskcc/ACCESS-Pipeline
cfDNA Sequencing Pipeline with UMI- 1.1.1.* environment.yaml
Size: 276 MB - Last synced: 16 days ago - Pushed: over 1 year ago
broadinstitute/malaria-amplicon-pipeline
- 2.0.1.* environment.yml
Size: 171 KB - Last synced: about 1 year ago - Pushed: about 1 year ago
gregoryleeman/bgwas3
- environment.yml
Size: 367 MB - Last synced: 26 days ago - Pushed: about 4 years ago
rargelaguet/mouse_organogenesis_10x_multiome_publication
Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""- rna/snakemake/environment.yaml
Size: 2.17 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
ajodeh-juma/viclara
viclara is a bioinformatics analysis pipeline for classification and reference guided assembly of segmented viruses from metagenomics reads obtained on Illumina platform.- 2.0.3.* environment.yml
Size: 10 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
idolawoye/BAGEP
A pipeline for Bacterial Whole genome sequence data analysis- environment.yml
Size: 3.14 MB - Last synced: 7 months ago - Pushed: almost 2 years ago
IARCbioinfo/RF-mut-f
A random forest implementation to filter germline mutations of tumor-only samples- environment.yml
Size: 97.7 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago
Nucleomics-VIB/single-cell-pipeline
Single cell Pipeline developed during internship- environment.yml
Last synced: over 1 year ago
ajodeh-juma/rvfv-amplicon-seq
A simple pipeline for Rift Valley fever virus consensus genome generation from amplicon sequencing- 2.0.3.* environment.yml
Size: 11.4 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
ScaleBio/nf-test
dummy workflow- envs/condaArchR/environment.yml
Size: 7.4 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
rargelaguet/10x_gastrulation_DNMTs
Dnmt3a, Dnmt3b, Dnmt1 KO scRNA-seq mouse early organogenesis- 2.1.1.* snakemake/environment.yaml
Size: 3.57 MB - Last synced: 2 months ago - Pushed: over 1 year ago
kirbyvisp/marmo
MARMO is a Modular and Robust pipeline for iMmune single-cell multi-Omics implemented in Snakemake.- 1.0.4 environment.yaml
Size: 2.86 MB - Last synced: over 1 year ago
mr-eyes/denovo-rnaseq
De novo assembly, Differential gene expression, and annotation workflow- 2.1.5 environment.yml
Size: 1.79 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
imgag/umiVar
Code-refactoring of umiVar tool.- environment.yml
Size: 9.73 MB - Last synced: 4 months ago - Pushed: 4 months ago
jts/ncov-tools
Small collection of tools for performing quality control on coronavirus sequencing data and genomes- workflow/envs/environment.yml
Size: 292 KB - Last synced: about 1 month ago - Pushed: about 1 month ago
russHyde/bfx_201909
Statistical Bioinformatics presentation- 2.0.1.* envs/environment.yml
Size: 327 KB - Last synced: about 1 year ago - Pushed: over 4 years ago
andurill/ACCESS-Pipeline
cfDNA Sequencing Pipeline with UMI- 1.1.1.* environment.yaml
Size: 276 MB - Last synced: about 1 year ago - Pushed: over 2 years ago
EpiDiverse/ewas
The EpiDiverse Epigenome-Wide Association Study Pipeline, implemented with Nextflow- 2.0.3.* env/environment.yml
Size: 20.9 MB - Last synced: 7 months ago - Pushed: about 1 year ago
greenelab/netscape
Exploring the network/pathway regularization landscape for gene expression data- 2.0.1.* environment.yml
Size: 6.09 MB - Last synced: 9 months ago - Pushed: about 4 years ago
NBISweden/SMS-21-5568-cray
SMS project #5568 for scRNA-seq analysis of crayfish data- 2.0.3.* environment.yml
Size: 79.1 KB - Last synced: almost 1 year ago - Pushed: over 1 year ago
maizeumn/grn
Maize Gene regulatory network (MaizeGRN)- 2.0.3.* environment.yml
Size: 24.1 MB - Last synced: about 1 year ago - Pushed: over 3 years ago
JohannesKersting/DysRegNetR
- >=2.1.6 environment.yaml
Size: 41 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
steffenlem/querysra
This pipeline queries the SRA database using metadata information- 2.0.1.* environment.yml
Size: 111 KB - Last synced: about 1 year ago - Pushed: about 4 years ago
richardslab/RPackageTemplate
A Template for setting up an R project- installation/environment.yml
Size: 64.5 KB - Last synced: about 1 year ago - Pushed: about 3 years ago
FredHutch/dvc-pipelines
- 2.0.1.* lib/modules/celda/environment.yml
- 2.0.1.* lib/modules/soupx/environment.yml
Size: 89.1 MB - Last synced: about 1 month ago - Pushed: over 3 years ago
Arkadiy-Garber/bvcn-binder-magiclamp
Tutorial for the MagicCave toolkit- environment.yml
Size: 27.5 MB - Last synced: about 1 year ago - Pushed: about 3 years ago
richardslab/VitaminD_COVID_MR
An attempt to recreate Guillaummes V-D/COVID MR paper- installation/environment.yaml
Size: 5.14 MB - Last synced: about 1 year ago - Pushed: about 3 years ago
GenomicsNX/vsn-pipelines Fork of vib-singlecell-nf/vsn-pipelines
A repository of pipelines for single-cell data in Nextflow DSL2- 2.0.1.* src/celda/environment.yml
- 2.0.1.* src/harmony/environment.yml
- 2.0.1.* src/soupx/environment.yml
Size: 2.7 MB - Last synced: about 2 months ago - Pushed: over 2 years ago
vdejager/aptaflow Fork of hovercat/aptaflow
- 2.0.1.* environment.yml
Size: 86.9 KB - Last synced: about 1 month ago - Pushed: over 1 year ago
Mye-InfoBank/SIMBA
A nextflow pipeline for processing sc-RNASeq data, performing QC and integration and preparing the results for further investigation using cellxgene.- 2.2.2 docker/rpy/environment.yml
Size: 981 MB - Last synced: about 2 months ago - Pushed: about 2 months ago
quevedor2/mini_projects
Repository for mini projects that don't warrant a repo of their own- 2.0.3 PDAC_AhR/envs/environment.yaml
Size: 657 KB - Last synced: 24 days ago - Pushed: 25 days ago
digitalcytometry/cytospace
CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data- 2.1.6.* environment.yml
Size: 14.9 MB - Last synced: about 1 month ago - Pushed: about 1 month ago
Leeds-MRG/Minos
SIPHER Microsimulation for estimating the effect on Income policy on mental health.- environment.yml
Size: 1.1 GB - Last synced: about 1 month ago - Pushed: about 1 month ago
eQTLGen/CisTransColoc
- environment.yml
Size: 30.3 KB - Last synced: 11 days ago - Pushed: 12 days ago