Ecosyste.ms: Repos

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Package Usage: conda: r-argparse

R package providing a command line optional and positional argument parser.
10 versions
Latest release: almost 2 years ago

View more package details: https://packages.ecosyste.ms/registries/anaconda.org/packages/r-argparse

View more repository details: https://repos.ecosyste.ms/hosts/GitHub/repositories/trevorld%2Fr-argparse

Dependent Repos 19

vib-singlecell-nf/vsn-pipelines 📦
A repository of pipelines for single-cell data in Nextflow DSL2
  • 2.0.1.* src/celda/environment.yml
  • 2.0.1.* src/harmony/environment.yml
  • 2.0.1.* src/soupx/environment.yml

Size: 2.66 MB - Last synced: 8 months ago - Pushed: about 1 year ago

mskcc/helix_filters_01
Workflows for post-pipeline data processing and file generation
  • 2.0.1.* containers/R-3.5.1/environment.yml
  • 2.0.4.* containers/reporting/environment.yml

Size: 4.51 MB - Last synced: 16 days ago - Pushed: about 1 year ago

vib-singlecell-nf/celda 📦
A repository for the celda module of the vib-singlecell-nf pipeline
  • 2.0.1.* src/celda/environment.yml

Size: 46.9 KB - Last synced: about 1 year ago - Pushed: over 3 years ago

mskcc/ACCESS-Pipeline
cfDNA Sequencing Pipeline with UMI
  • 1.1.1.* environment.yaml

Size: 276 MB - Last synced: 16 days ago - Pushed: over 1 year ago

broadinstitute/malaria-amplicon-pipeline
  • 2.0.1.* environment.yml

Size: 171 KB - Last synced: about 1 year ago - Pushed: about 1 year ago

gregoryleeman/bgwas3
  • environment.yml

Size: 367 MB - Last synced: 26 days ago - Pushed: about 4 years ago

rargelaguet/mouse_organogenesis_10x_multiome_publication
Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""
  • rna/snakemake/environment.yaml

Size: 2.17 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

ajodeh-juma/viclara
viclara is a bioinformatics analysis pipeline for classification and reference guided assembly of segmented viruses from metagenomics reads obtained on Illumina platform.
  • 2.0.3.* environment.yml

Size: 10 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

idolawoye/BAGEP
A pipeline for Bacterial Whole genome sequence data analysis
  • environment.yml

Size: 3.14 MB - Last synced: 7 months ago - Pushed: almost 2 years ago

IARCbioinfo/RF-mut-f
A random forest implementation to filter germline mutations of tumor-only samples
  • environment.yml

Size: 97.7 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago

Nucleomics-VIB/single-cell-pipeline
Single cell Pipeline developed during internship
  • environment.yml

Last synced: over 1 year ago

ajodeh-juma/rvfv-amplicon-seq
A simple pipeline for Rift Valley fever virus consensus genome generation from amplicon sequencing
  • 2.0.3.* environment.yml

Size: 11.4 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

ScaleBio/nf-test
dummy workflow
  • envs/condaArchR/environment.yml

Size: 7.4 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

rargelaguet/10x_gastrulation_DNMTs
Dnmt3a, Dnmt3b, Dnmt1 KO scRNA-seq mouse early organogenesis
  • 2.1.1.* snakemake/environment.yaml

Size: 3.57 MB - Last synced: 2 months ago - Pushed: over 1 year ago

kirbyvisp/marmo
MARMO is a Modular and Robust pipeline for iMmune single-cell multi-Omics implemented in Snakemake.
  • 1.0.4 environment.yaml

Size: 2.86 MB - Last synced: over 1 year ago

mr-eyes/denovo-rnaseq
De novo assembly, Differential gene expression, and annotation workflow
  • 2.1.5 environment.yml

Size: 1.79 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

imgag/umiVar
Code-refactoring of umiVar tool.
  • environment.yml

Size: 9.73 MB - Last synced: 4 months ago - Pushed: 4 months ago

jts/ncov-tools
Small collection of tools for performing quality control on coronavirus sequencing data and genomes
  • workflow/envs/environment.yml

Size: 292 KB - Last synced: about 1 month ago - Pushed: about 1 month ago

russHyde/bfx_201909
Statistical Bioinformatics presentation
  • 2.0.1.* envs/environment.yml

Size: 327 KB - Last synced: about 1 year ago - Pushed: over 4 years ago

andurill/ACCESS-Pipeline
cfDNA Sequencing Pipeline with UMI
  • 1.1.1.* environment.yaml

Size: 276 MB - Last synced: about 1 year ago - Pushed: over 2 years ago

EpiDiverse/ewas
The EpiDiverse Epigenome-Wide Association Study Pipeline, implemented with Nextflow
  • 2.0.3.* env/environment.yml

Size: 20.9 MB - Last synced: 7 months ago - Pushed: about 1 year ago

greenelab/netscape
Exploring the network/pathway regularization landscape for gene expression data
  • 2.0.1.* environment.yml

Size: 6.09 MB - Last synced: 9 months ago - Pushed: about 4 years ago

NBISweden/SMS-21-5568-cray
SMS project #5568 for scRNA-seq analysis of crayfish data
  • 2.0.3.* environment.yml

Size: 79.1 KB - Last synced: almost 1 year ago - Pushed: over 1 year ago

maizeumn/grn
Maize Gene regulatory network (MaizeGRN)
  • 2.0.3.* environment.yml

Size: 24.1 MB - Last synced: about 1 year ago - Pushed: over 3 years ago

JohannesKersting/DysRegNetR
  • >=2.1.6 environment.yaml

Size: 41 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

steffenlem/querysra
This pipeline queries the SRA database using metadata information
  • 2.0.1.* environment.yml

Size: 111 KB - Last synced: about 1 year ago - Pushed: about 4 years ago

richardslab/RPackageTemplate
A Template for setting up an R project
  • installation/environment.yml

Size: 64.5 KB - Last synced: about 1 year ago - Pushed: about 3 years ago

FredHutch/dvc-pipelines
  • 2.0.1.* lib/modules/celda/environment.yml
  • 2.0.1.* lib/modules/soupx/environment.yml

Size: 89.1 MB - Last synced: about 1 month ago - Pushed: over 3 years ago

Arkadiy-Garber/bvcn-binder-magiclamp
Tutorial for the MagicCave toolkit
  • environment.yml

Size: 27.5 MB - Last synced: about 1 year ago - Pushed: about 3 years ago

richardslab/VitaminD_COVID_MR
An attempt to recreate Guillaummes V-D/COVID MR paper
  • installation/environment.yaml

Size: 5.14 MB - Last synced: about 1 year ago - Pushed: about 3 years ago

GenomicsNX/vsn-pipelines Fork of vib-singlecell-nf/vsn-pipelines
A repository of pipelines for single-cell data in Nextflow DSL2
  • 2.0.1.* src/celda/environment.yml
  • 2.0.1.* src/harmony/environment.yml
  • 2.0.1.* src/soupx/environment.yml

Size: 2.7 MB - Last synced: about 2 months ago - Pushed: over 2 years ago

vdejager/aptaflow Fork of hovercat/aptaflow
  • 2.0.1.* environment.yml

Size: 86.9 KB - Last synced: about 1 month ago - Pushed: over 1 year ago

Mye-InfoBank/SIMBA
A nextflow pipeline for processing sc-RNASeq data, performing QC and integration and preparing the results for further investigation using cellxgene.
  • 2.2.2 docker/rpy/environment.yml

Size: 981 MB - Last synced: about 2 months ago - Pushed: about 2 months ago

quevedor2/mini_projects
Repository for mini projects that don't warrant a repo of their own
  • 2.0.3 PDAC_AhR/envs/environment.yaml

Size: 657 KB - Last synced: 24 days ago - Pushed: 25 days ago

digitalcytometry/cytospace
CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data
  • 2.1.6.* environment.yml

Size: 14.9 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

Leeds-MRG/Minos
SIPHER Microsimulation for estimating the effect on Income policy on mental health.
  • environment.yml

Size: 1.1 GB - Last synced: about 1 month ago - Pushed: about 1 month ago

eQTLGen/CisTransColoc
  • environment.yml

Size: 30.3 KB - Last synced: 11 days ago - Pushed: 12 days ago