Ecosyste.ms: Repos

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Package Usage: conda: r-cpp11

cpp11 helps you to interact with R objects using C++ code.
14 versions
Latest release: over 1 year ago
20 dependent packages

View more package details: https://packages.ecosyste.ms/registries/anaconda.org/packages/r-cpp11

View more repository details: https://repos.ecosyste.ms/hosts/GitHub/repositories/r-lib%2Fcpp11

Dependent Repos 31

rjof/coronavirus_dashboard_mexico
Fork of https://github.com/RamiKrispin/coronavirus_dashboard with minimal tweaks for Mexico
  • 0.2.6 environment.yml

Size: 12.8 MB - Last synced: 5 months ago - Pushed: over 1 year ago

rjof/rjof.github.io
Personal projects
  • 0.2.6 docs/environment.yml
  • 0.2.6 environment.yml

Size: 38.5 MB - Last synced: 5 months ago - Pushed: over 1 year ago

brucemoran/tumour_only
Tumour-only DNA sequencing analysis
  • 0.2.7 environment.yaml

Size: 58.6 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

btmartin721/ClineHelpR
Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clines and hybrid indices with Environmental Variables
  • 0.4.0 environment.yml

Size: 93.4 MB - Last synced: 7 months ago - Pushed: almost 2 years ago

jseeman/publication-supplements
Code and data for research replication and reuse
  • 0.2.7 2022_arsia/environment.yaml

Size: 511 KB - Last synced: about 1 year ago - Pushed: about 2 years ago

vaqm2/custom_gwas
Python Code using CyVCF2 to run custom GWAS models on imputed VCF files
  • 0.4.2.* environment.yml

Size: 958 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago

nlm-irp-jianglab/Evolink
:palm_tree: A Phylogenetic Approach for Rapid Identification of Genotype-Phenotype Associations in Large-scale Microbial Multi-species Data
  • 0.4.2 environment.yml

Size: 251 MB - Last synced: 9 months ago - Pushed: 9 months ago

GWeindel/lecture_R
A really short introduction (4 hours lecture) for psychology doctoral students at Aix Marseille University.
  • 0.2.7 environment.yml

Size: 4 MB - Last synced: about 1 year ago - Pushed: about 3 years ago

happykhan/journal
Citation lists
  • 0.4.2 environment.yml

Size: 28 MB - Last synced: about 1 year ago - Pushed: about 1 year ago

jamesfitton/cxr
Intertidal water occurrence generator from Sentinel 2 satellite data and Google Earth Engine
  • 0.4.2 environment.yml

Size: 1 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

sadamov/pollenmaps
Creating some nice maps in R
  • 0.3.1 environment.yml

Size: 79.6 MB - Last synced: about 1 year ago - Pushed: over 2 years ago

Colorado-State-University-CMB/Intro-to-qCMB-2022
Class work for Intro to qCMB
  • 0.4.2 R_on_Summit/environment.yml

Size: 31.4 MB - Last synced: about 2 months ago - Pushed: over 1 year ago

SERVIR/mekong-swat-django
  • 0.4.2 environment.yml

Size: 1.58 MB - Last synced: about 2 months ago - Pushed: over 1 year ago

sadamov/phenology_curve_fitting
Fitting of phenological season description curves to historical pollen measurements.
  • 0.4.2 environment.yml

Size: 53.1 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

russHyde/mast-shiny
Notes / code from working through "Mastering Shiny". Written while running a R4DS bookclub
  • 0.2.6.* conda/environment.yml

Size: 154 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago

greenelab/2022-cf-sputum
Analysis of cystic fibrosis sputum RNA-seq samples for discovery of interesting gene expression pathways
  • 0.2.7 environment.yml

Size: 4.92 MB - Last synced: 9 months ago - Pushed: over 1 year ago

krinsman/droplets
  • 0.2.7 environment.yml

Last synced: over 1 year ago

wrightdw/COG-UK-ME
COG-UK Mutation Explorer
  • 0.2.7 environment.yml

Size: 105 MB - Last synced: 3 months ago - Pushed: 3 months ago

kevinpryan/caf-subtype-analysis
  • 0.4.2 environment.yml

Size: 56.9 MB - Last synced: 8 months ago - Pushed: 8 months ago

mr-eyes/denovo-rnaseq
De novo assembly, Differential gene expression, and annotation workflow
  • 0.4.2 environment.yml

Size: 1.79 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

gonzalosm98/scRNA-SeqAnalysis
  • 0.4.2 environment.yml

Size: 62.5 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

cjc77/Fogg-Lab-RNA-Seq-analysis
Preliminary analysis and informatics for TCGA gynecological cancer data
  • 0.2.6.* environment.yml

Size: 61.3 MB - Last synced: 4 months ago - Pushed: over 1 year ago

dieterich-lab/ImmunOMICS
  • 0.4.3 environment.yml

Size: 27.6 MB - Last synced: about 2 months ago - Pushed: about 1 year ago

liaoherui/GDmicro
GDmicro - Use GCN and Deep adaptation network to classify host disease status based on human gut microbiome data.
  • 0.2.7 environment.yaml

Size: 3.57 MB - Last synced: 22 days ago - Pushed: about 2 months ago

macs3-project/genomics-analysis-pipelines Fork of taoliulab/genomics-analysis-pipelines
Pipeline codes for analyzing various genomics datasets based on MACS3
  • environment.yaml

Size: 1.46 MB - Last synced: 2 months ago - Pushed: 2 months ago

gagneurlab/transmicron
  • 0.4.2.* environment.yml

Size: 16.7 MB - Last synced: 5 days ago - Pushed: over 1 year ago

SteMIDIfactory/P-DOR
Quick and easy outbreak reconstruction pipeline
  • 0.4.2 environment.yml

Size: 37.7 MB - Last synced: 3 months ago - Pushed: 8 months ago

mjaquiery/genetics-snakemake
Snakemake workflow for handling PRS scores and relatedness calculations for human genetic data from ALSPAC.
  • 0.4.3 workflow/envs/environment.yaml

Size: 1.44 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

paezha/PyERT-BLACK
Capstone project for course 4G06
  • 0.4.2 environment.yml

Size: 23.2 MB - Last synced: 10 days ago - Pushed: about 1 year ago

phbradley/tcr-gwas
Collaboration to find genetic variation associated with TCR repertoire differences
  • 0.2.7 environment.yml

Size: 176 MB - Last synced: 26 days ago - Pushed: over 2 years ago

magdalenarussell/mechanistic-trimming
Collaboration to identify sequence-level determinants of nucleotide trimming during V(D)J recombination
  • 0.4.2 environment.yml

Size: 185 MB - Last synced: 19 days ago - Pushed: 19 days ago

EpiDiverse/ewas
The EpiDiverse Epigenome-Wide Association Study Pipeline, implemented with Nextflow
  • 0.2.7.* env/environment.yml

Size: 20.9 MB - Last synced: 7 months ago - Pushed: about 1 year ago

storm-platform/storm-gallery
A gallery of interesting codes based on Storm Platform technologies.
  • 0.4.2.* applications/bdc-article/compendium/environment.yml
  • 0.4.2.* applications/deforestation-detection/compendium/fraction-classification/environment.yml
  • 0.4.2.* applications/sits-article/compendium/environment.yml

Size: 42.7 MB - Last synced: 23 days ago - Pushed: over 1 year ago

maizeumn/grn
Maize Gene regulatory network (MaizeGRN)
  • 0.2.4.* environment.yml

Size: 24.1 MB - Last synced: about 1 year ago - Pushed: over 3 years ago

joaopalmeiro/r-playground
Some experiments with R.
  • 0.2.4.* clifford-attractor/environment.yml

Size: 4.08 MB - Last synced: about 1 year ago - Pushed: almost 3 years ago

giorgioangel/evc
Official repository of the paper "An Offline Risk-aware Policy Selection Method for Bayesian Markov Decision Processes"
  • 0.4.2 environment.yml

Size: 58.6 KB - Last synced: 9 months ago - Pushed: almost 2 years ago

jhgille2/Transcriptome-length-discrepency-tool
Some code to (hopefully) help to resolve an issue where sequences in a BAM/SAM header have a different length indicated than what is indicated in both a gtf file and transcriptome file used in a common pipeline
  • 0.4.3 environment.yml

Size: 32.2 KB - Last synced: about 1 year ago - Pushed: about 1 year ago

jhgille2/rna_seq_pipeline_template
WIP reproducible pipeline for rna seq differential expression analysis
  • 0.4.3 environment.yml

Size: 77.1 KB - Last synced: about 1 year ago - Pushed: about 1 year ago

zia-foisal/reproducible_drought_index
A repository to practice reproducible research practices while studing the state of the drought around the world
  • 0.4.2 environment.yaml

Size: 10.7 KB - Last synced: 12 months ago - Pushed: over 1 year ago

crlero/snakemake-tutorial
  • 0.4.2.* handson/workflow/environment.yaml

Size: 3.39 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago

kelly-sovacool/advent-of-code
My solutions to the Advent of Code puzzles.
  • 0.4.0 environment.yml

Size: 132 KB - Last synced: 12 days ago - Pushed: over 1 year ago

TeamPerie/Report_Daphne Fork of dvginneken/Reproduce_Thesis_InstitutCurie
  • 0.4.3 environment.yml

Size: 32.6 MB - Last synced: 10 months ago - Pushed: 10 months ago

davidecarlson/Snakemake_diff_gene_expr
Differential Gene Expression with Snakemake
  • 0.2.4 environment.yml

Size: 37.1 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago

yarikoptic/example-notebooks-1 Fork of dandi/example-notebooks
  • 0.4.3 000039/AllenInstitute/environment.yml

Size: 16.1 MB - Last synced: 10 months ago - Pushed: 10 months ago

sebsciarra/ds_project
  • 0.4.6.* environment.yml

Size: 80.1 KB - Last synced: 9 months ago - Pushed: 9 months ago

kylestanley1313/ffa-p1
A repository for code related to the first iteration of functional factor analysis (FFA).
  • 0.4.3.* environment.yml

Size: 1.17 MB - Last synced: 27 days ago - Pushed: 6 months ago

robert-altwasser/umi-processing
  • 0.4.2 env/environment.yml

Size: 340 KB - Last synced: 5 months ago - Pushed: 6 months ago

Mye-InfoBank/SIMBA
A nextflow pipeline for processing sc-RNASeq data, performing QC and integration and preparing the results for further investigation using cellxgene.
  • 0.4.7 docker/rpy/environment.yml

Size: 981 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

nathan-adeyemi/Inpatient-Bed-Allocation-Optimization
  • 0.4.7.* environment.yaml

Size: 8.22 MB - Last synced: 4 months ago - Pushed: 4 months ago

Kenneth-Mitchell/HMC-Thesis
  • 0.4.6 environment.yml

Size: 8.85 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

WenfeiY/P.patens_geno_design
Python and R script for Physcomitrium patens genome design
  • 0.4.7 environment.yml

Size: 865 KB - Last synced: about 2 months ago - Pushed: about 2 months ago

is-the-biologist/QC_long_reads
  • 0.4.7 workflow/envs/environment.yml

Size: 157 MB - Last synced: 17 days ago - Pushed: 17 days ago

a-hr/pol2speed_pipeline
  • 0.4.7 environment.yaml

Size: 15.9 MB - Last synced: 7 days ago - Pushed: 7 days ago

SteinPanyu/IndependentReproducibility
  • 0.4.3 environment.yaml

Size: 20.2 MB - Last synced: 6 days ago - Pushed: 6 days ago

UBC-STAT-IT/docker-stacks
Dockerfiles for courses running JupyterHub environments.
  • r-dssg/environment.yml

Size: 177 KB - Last synced: 3 days ago - Pushed: 3 days ago

dandi/example-notebooks
  • 0.4.3 000039/AllenInstitute/environment.yml

Size: 57.5 MB - Last synced: about 9 hours ago - Pushed: about 10 hours ago