Ecosyste.ms: Repos

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Package Usage: conda: r-gsalib


2 versions
Latest release: over 1 year ago

View more package details: https://packages.ecosyste.ms/registries/anaconda.org/packages/r-gsalib

Dependent Repos 9

fargenfo/gatk-joint-genotyping
  • 2.1.* environment.yml

Size: 46.9 KB - Last synced: about 1 year ago - Pushed: over 2 years ago

casrssk/WGS-analysis-in-C_trachomatis
  • 2.1 linux/sample/envs/environment.yml

Size: 7.39 MB - Last synced: 5 months ago - Pushed: about 2 years ago

fargenfo/linkseq
A GATK best-practices pipeline adapted to 10x Genomics linked-reads.
  • 2.1.* environment.yml

Size: 20.1 MB - Last synced: 7 months ago - Pushed: over 2 years ago

luisacusick/VC-Optimus
Bioinformatics pipeline to take short reads, align them to a reference, and call SNPs.
  • 2.1 environment.yml

Size: 138 KB - Last synced: about 1 year ago - Pushed: about 3 years ago

IARCbioinfo/BQSR-nf
Nextflow script for base quality score recalibration of bam files using GATK
  • 2.1.0.* environment.yml

Size: 267 KB - Last synced: 7 months ago - Pushed: almost 2 years ago

IARCbioinfo/RNAseq-nf
RNAseq analysis pipeline
  • 2.1.0.* environment.yml

Size: 10.4 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago

ryanlayerlab/layer_lab_chco
  • container/environment.yml

Size: 5.88 MB - Last synced: about 1 year ago - Pushed: over 2 years ago

acc-bioinfo/ACC-environment
Conda environment and docker recipe that contains all software and libraries used for the ACC projects.
  • 2.1 environment.yml

Last synced: over 1 year ago

IanSudbery/alvarez_et_al
Code and other scripts for Alvarez-Beneyas et al 2020
  • 2.1 environment.yml

Size: 41.2 MB - Last synced: 10 months ago - Pushed: over 2 years ago

fargenfo/fargen-ngs
  • 2.1.* environment.yml

Size: 48.8 KB - Last synced: about 1 year ago - Pushed: over 2 years ago

ryanlayerlab/layer_lab_caw
NGS data analysis pipeline focused on somatic analysis
  • container/environment.yml

Size: 2.09 MB - Last synced: about 1 year ago - Pushed: over 3 years ago

bihealth/snappy-pipeline
SNAPPY Nucleic Acid Processing in Python
  • 2.1.* snappy_wrappers/wrappers/gcnv/annotate_gc/environment.yaml
  • 2.1.* snappy_wrappers/wrappers/gcnv/annotate_gc_wgs/environment.yaml
  • 2.1.* snappy_wrappers/wrappers/gcnv/call_cnvs_case_mode/environment.yaml
  • 2.1.* snappy_wrappers/wrappers/gcnv/call_cnvs_cohort_mode/environment.yaml
  • 2.1.* snappy_wrappers/wrappers/gcnv/contig_ploidy/environment.yaml
  • 2.1.* snappy_wrappers/wrappers/gcnv/contig_ploidy_case_mode/environment.yaml
  • 2.1.* snappy_wrappers/wrappers/gcnv/coverage/environment.yaml
  • 2.1.* snappy_wrappers/wrappers/gcnv/environment.yaml
  • 2.1.* snappy_wrappers/wrappers/gcnv/filter_intervals/environment.yaml
  • 2.1.* snappy_wrappers/wrappers/gcnv/joint_germline_cnv_segmentation/environment.yaml
  • 2.1.* snappy_wrappers/wrappers/gcnv/post_germline_calls/environment.yaml
  • 2.1.* snappy_wrappers/wrappers/gcnv/post_germline_calls_case_mode/environment.yaml
  • 2.1.* snappy_wrappers/wrappers/gcnv/preprocess_intervals/environment.yaml
  • 2.1.* snappy_wrappers/wrappers/gcnv/preprocess_intervals_wgs/environment.yaml
  • 2.1.* snappy_wrappers/wrappers/gcnv/scatter_intervals/environment.yaml

Size: 7.57 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

EichlerLab/docker_hub
Repository for Testing Automatic Builds with Docker Hub
  • 2.1.* gatk/4.3.0.0/environment.yml

Size: 2.59 MB - Last synced: 14 days ago - Pushed: 20 days ago