Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
Package Usage: conda: r-tidyverse
5 versions
Latest release: almost 2 years ago
4 dependent packages
View more package details: https://packages.ecosyste.ms/registries/anaconda.org/packages/r-tidyverse
Dependent Repos 173
rjof/coronavirus_dashboard_mexico
Fork of https://github.com/RamiKrispin/coronavirus_dashboard with minimal tweaks for Mexico- 1.2.1 environment.yml
Size: 12.8 MB - Last synced: 5 months ago - Pushed: over 1 year ago
rjof/rjof.github.io
Personal projects- 1.2.1 docs/environment.yml
- 1.2.1 environment.yml
Size: 38.5 MB - Last synced: 5 months ago - Pushed: over 1 year ago
ome/omero-guide-r
- 1.3.* binder/environment.yml
Size: 2.01 MB - Last synced: about 1 month ago - Pushed: about 1 year ago
FORCOLAB-UofT/INFOX
This is a prototype for overview of GitHub forks.- 1.2.1 environment.yaml
Size: 14.3 MB - Last synced: about 2 months ago - Pushed: 3 months ago
brucemoran/tumour_only
Tumour-only DNA sequencing analysis- 1.3.1 environment.yaml
Size: 58.6 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
ikmb/virus-pipe
Pipeline to map and variant call a Sars-CoV2 sample from amplicon sequencing. De-novo assembly is available as option.- 1.3.0.* environment.yml
Size: 1.65 MB - Last synced: about 1 year ago - Pushed: about 1 year ago
qbic-pipelines/rnadeseq
Differential gene expression analysis and pathway analysis of RNAseq data- 1.3.1.* environment.yml
Size: 62.4 MB - Last synced: 1 day ago - Pushed: 1 day ago
stschiff/exp_dat_reading_group_2021
Public Repository of our Fall 2021 Reading group on PCA, STRUCTURE and other means of low-dimensional representation of genetic data- 1.3.1 environment.yml
Size: 13.9 MB - Last synced: 29 days ago - Pushed: over 2 years ago
gdaviduu/House-Sparrow-Genome-Analysis
Structural Variant Analysis of short-read Illumina data for Passer domesticus- environment.yml
Size: 9.54 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
epiBioCore/Snakemake-Nanopolish-Methylation
- 1.3.* environment.yaml
Size: 52.7 KB - Last synced: 12 months ago - Pushed: about 3 years ago
lifebit-ai/traits-archived 📦
Workflow for collecting genetic traits information (heritability, genetic correlation) from GWAS summary statistics- environment.yml
Size: 128 KB - Last synced: 26 days ago - Pushed: over 2 years ago
ikfj/JDCat-base
- environment.yml
Size: 2.93 KB - Last synced: about 1 year ago - Pushed: about 2 years ago
bahlolab/PLASTER
Nextflow pipeline for long amplicon typing of PacBio SMRT sequencing data- inst/environment.yml
Size: 42.2 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago
Gregor-Mendel-Institute/aradeepopsis
A versatile, fully open-source pipeline to extract phenotypic measurements from plant images- 1.3.1.* containers/shiny/environment.yml
Size: 2.75 MB - Last synced: 7 days ago - Pushed: over 1 year ago
metashot/docker
Metashot docker images- dockerfiles/anvio/7-1/environment.yml
Size: 1.35 MB - Last synced: 12 months ago - Pushed: 12 months ago
jseeman/publication-supplements
Code and data for research replication and reuse- 1.2.1 2022_arsia/environment.yaml
Size: 511 KB - Last synced: about 1 year ago - Pushed: about 2 years ago
broadinstitute/lincs-cell-painting
Processed Cell Painting Data for the LINCS Drug Repurposing Project- 1.3.0.* environment.yml
Size: 108 MB - Last synced: 7 months ago - Pushed: almost 2 years ago
KI-Campus/Datengeschichten
Übungsaufgaben für den KI-Campus-Kurs "Von der Datenanalyse zur Datengeschichte"- environment.yml
Size: 2.46 MB - Last synced: 4 months ago - Pushed: over 1 year ago
sungjyoo/r4_machinelearning
- binder/environment.yml
Size: 494 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago
alexandermolin/barcodeer_content
- environment.yml
Size: 12.7 KB - Last synced: 5 months ago - Pushed: almost 2 years ago
mlorthiois/ANNEXA 📦
Nextflow pipeline to extend reference annotation with nanopore reads, classify novel genes (mRNAs vs lncRNAs), and count gene/transcript expression levels.- environment.yml
Size: 225 MB - Last synced: 7 months ago - Pushed: over 1 year ago
hivlab/virome-wrappers
snakemake wrappers- prepare_taxonomy_data/environment.yaml
Size: 30.5 MB - Last synced: about 1 year ago - Pushed: about 2 years ago
ikfj/ma-keiryo
- environment.yml
Size: 23.4 KB - Last synced: about 1 month ago - Pushed: about 1 month ago
oceanhackweek/jupyter-image
jupyter-image- r/environment.yml
Size: 728 KB - Last synced: 29 days ago - Pushed: 9 months ago
AstrobioMike/binder-R-anova
- environment.yml
Size: 198 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago
timplab/ncov
ncov work- environment.yml
Size: 4.17 MB - Last synced: 2 months ago - Pushed: over 3 years ago
nibscbioinformatics/viralevo
- 1.2.1.* containers/viralevo-reporting/environment.yml
- 1.2.1.* environment.yml
Size: 308 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
nibscbioinformatics/scranger
scRNAseq Pipeline running Cell Ranger and Seurat- 1.2.1.* environment.yml
Size: 237 KB - Last synced: 7 months ago - Pushed: over 3 years ago
TheJacksonLaboratory/sbas
CloudOS Digital Research Environment- 1.3.* environment.yml
Size: 159 MB - Last synced: 2 months ago - Pushed: over 2 years ago
nibscbioinformatics/nanoprofiler
Profiling Nanobodies sequencing libraries- 1.2.1.* software/local/report/environment.yml
Size: 2.43 MB - Last synced: about 1 year ago - Pushed: over 3 years ago
kircherlab/snakemake_wrappers
snakemake wrappers to share with others and to us ethem in multiple projects- >=1.3 plots/PR_ROC_curves_metric/environment.yaml
- >=1.3 plots/ggcorrplot/environment.yaml
- plots/gridplot/environment.yaml
- >=1.3 plots/pre_re_f1_f2/environment.yaml
Size: 338 KB - Last synced: 10 months ago - Pushed: 10 months ago
UBC-DSCI/predict-airbnb-nightly-price
- 1.3.1.* environment.yml
Size: 839 KB - Last synced: about 1 year ago - Pushed: about 2 years ago
CaRCC/CaRCC-RCD-Census-Paper-PEARC22-data
Data and analysis repository for use with Binder- environment.yml
Size: 354 KB - Last synced: 9 months ago - Pushed: over 1 year ago
cgpu/staries
The *ies. A series of <star>-ies util snippets, scripts or templates that I use day to day.- containers/papermill/environment.yml
Size: 4.61 MB - Last synced: 3 months ago - Pushed: 4 months ago
InfantLab/little-drummers
- 1.2.1 analysis/environment.yml
Size: 1.04 GB - Last synced: about 1 year ago - Pushed: almost 2 years ago
vaqm2/custom_gwas
Python Code using CyVCF2 to run custom GWAS models on imputed VCF files- 1.3.1.* environment.yml
Size: 958 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago
humberto-ortiz/expression-workshop
Materials for UPR-CCC U54 bioconductor workshop- environment.yml
Size: 135 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago
BioinfoNet/TeachingJupyterNotebooks
Training materials for the Open Science Workshop held in Nariobi- 1.2.1 environment.yml
Size: 16 MB - Last synced: about 1 year ago - Pushed: over 5 years ago
JaehyunSong/binder-kobe
- environment.yml
Size: 23.4 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago
moj-analytical-services/DefCalc
The deflator calculator.- 1.3.0 environment.yml
Size: 4.83 MB - Last synced: 10 months ago - Pushed: 10 months ago
IdoBar/CNVpytor_binder
Binder repo to analyse CNVpytor results- .binder/environment.yml
Size: 151 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago
AnimalGenomicsETH/bovine-graphs
Integrate multiple genome assemblies into a pangenome graph- envs/environment.yml
Size: 23.4 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago
pritchardlabatpsu/cga
CERES predictions based on functional and genomic features- environment.yml
Size: 16.8 MB - Last synced: about 1 year ago - Pushed: over 2 years ago
Bishop-Laboratory/LiverDB
- preprocess/environment.yml
Size: 94.6 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago
ecmaggioncalda/2022_07_05_Kleb_GWAS_SR
CHG project- config/environment.yml
Size: 313 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago
davidecolla/semantic_coherence_markers
- 1.2.1 environment.yml
Size: 390 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
lifebit-ai/phewas
Performs a PheWAS analysis & generates a Manhattan plot using the PheWAS R package- environment.yml
Size: 6.78 MB - Last synced: 26 days ago - Pushed: about 1 year ago
SchlossLab/Lesniak_Clearance_mSphere_2021
Effect of C. difficile colonization on recovery of gut microbiota in antibiotic-treated mice- 1.2.1.* config/environment.yml
Size: 126 MB - Last synced: almost 1 year ago - Pushed: about 3 years ago
JakobJuergens/Outlier_Detection_FDA
ose-data-science-course-projeect-JakobJuergens created by GitHub Classroom- environment.yml
Size: 287 MB - Last synced: about 1 year ago - Pushed: over 2 years ago
AStrittmatter/CML-Course
- binder/environment.yml
Size: 38.3 MB - Last synced: about 1 year ago - Pushed: about 2 years ago
smith15630/git_repo_R
- binder/environment.yml
Size: 593 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago
nlm-irp-jianglab/Evolink
:palm_tree: A Phylogenetic Approach for Rapid Identification of Genotype-Phenotype Associations in Large-scale Microbial Multi-species Data- 1.3.1 environment.yml
Size: 251 MB - Last synced: 9 months ago - Pushed: 9 months ago
rki-mf1/vocal
Vocal is a simple Variants Of Concern ALert system script. Doc https://rki-mf1.github.io/vocal-doc/- 1.3.1.* environment.yml
Size: 3.31 MB - Last synced: about 2 months ago - Pushed: over 1 year ago
pangenome/pgge
the pangenome graph evaluator- 1.3.0.* environment.yml
Size: 23 MB - Last synced: about 1 year ago - Pushed: about 3 years ago
GWeindel/lecture_R
A really short introduction (4 hours lecture) for psychology doctoral students at Aix Marseille University.- 1.3.1 environment.yml
Size: 4 MB - Last synced: about 1 year ago - Pushed: about 3 years ago
opentargets/target_safety
Target safety pipeline in Open Targets- environment.yaml
Size: 80.1 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago
IdoBar/6003ESC_workshops_binder
Scientific Data Analysis Workshops (Binder-ready)- .binder/environment.yml
Size: 27.8 MB - Last synced: 10 months ago - Pushed: 10 months ago
upsetjs/upsetjs_r
😠htmlwidget R bindings for UpSet.js for rendering UpSet plots, Euler, and Venn Diagrams- binder/environment.yml
Size: 4.16 MB - Last synced: 19 days ago - Pushed: about 1 year ago
ajayago/NCMF_bioinformatics
- 1.2.1 CMF/environment.yml
Size: 202 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago
Genomic-Medicine-Linkoping/gmsmetapost Fork of genomic-medicine-sweden/gmsmetapost
GMS Metagenomics post-classification- >=1.3.2 conf/environments/environment.yml
Size: 2.32 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
ajodeh-juma/viclara
viclara is a bioinformatics analysis pipeline for classification and reference guided assembly of segmented viruses from metagenomics reads obtained on Illumina platform.- 1.3.0.* environment.yml
Size: 10 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
lifebit-ai/simulate
Simulate genomic data on demand- 1.3.0.* environment.yml
Size: 318 KB - Last synced: 26 days ago - Pushed: about 1 year ago
oliviergimenez/computo-deeplearning-occupany-lynx
- environment.yml
Size: 690 MB - Last synced: about 2 months ago - Pushed: about 2 years ago
kelly-sovacool/meta-repo
A meta-repository to organize my public projects.- 1.2.1 config/environment.yml
Size: 33.2 MB - Last synced: 9 months ago - Pushed: 9 months ago
jdanbrown/birdgram
Bird song classifier in a mobile app- 1.1.1.* model/environment.yml
Size: 713 MB - Last synced: 29 days ago - Pushed: 11 months ago
vjayaman/Metrics-CGM-ECC
- documentation/environment.yml
Size: 114 MB - Last synced: 1 day ago - Pushed: almost 2 years ago
tialiv/Cell_line_bulk_seq_202011
Bulk RNA sequencing project on ovarian cell lines (COV434, KGN, primary cells) after exposure to DMSO, DES 10-6M & 10-10M and KTZ 10-5M & 10-9M.- 1.3.1.* environment.yml
Size: 12.9 MB - Last synced: 17 days ago - Pushed: over 1 year ago
jamesfitton/cxr
Intertidal water occurrence generator from Sentinel 2 satellite data and Google Earth Engine- 1.3.2 environment.yml
Size: 1 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
aw236/boilerplate_code
best functions- 1.2.1.* environment.yml
Size: 380 KB - Last synced: 28 days ago - Pushed: 12 months ago
binder-examples/r-conda
R and RStudio via conda packages in repo2docker- environment.yml
Size: 8.79 KB - Last synced: about 1 month ago - Pushed: almost 3 years ago
lifebit-ai/prs
Polygenic Risk Scores Pipeline to calculate genetic risk score for any given phenotype/trait (using PRSice)- 1.3.0.* environment.yml
Size: 57.6 MB - Last synced: 26 days ago - Pushed: about 1 year ago
PEATSPEC/EGU22_WTD_workshop
- environment.yml
Size: 9.67 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago
andrealauria104/ngsRtools
A Suite of R Packages for NGS-based Epigenomic Data Analysis.- 1.2.1.* data/environment.yml
Size: 714 KB - Last synced: 28 days ago - Pushed: about 1 year ago
brucemoran/somatic_n-of-1
Somatic-Germline n-of-1 DNAseq Analysis- environment.yaml
Size: 317 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
samlipworth/influenza
- environment.yml
Size: 161 KB - Last synced: 10 months ago - Pushed: almost 3 years ago
lifebit-ai/pcgr-nf
Pipeline to run pcgr tool on vcf file- 1.3.0.* environment.yml
Size: 1.19 MB - Last synced: 26 days ago - Pushed: about 1 year ago
salzman-lab/nf-sicilian
- 1.3.1.* environment.yml
Size: 2.35 MB - Last synced: about 1 year ago - Pushed: about 2 years ago
XinyanHe/INFOX Fork of FORCOLAB-UofT/INFOX
This is a prototype for overview of GitHub forks.- 1.2.1 environment.yaml
Size: 12.6 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
zietzm/qtphenproxy_h2
- 1.3.1.* environment.yml
Size: 120 KB - Last synced: 9 months ago - Pushed: about 2 years ago
IARCbioinfo/RNAseq-transcript-nf
Transcript-level RNA-seq analysis- 1.3.0.* environment.yml
Size: 1.75 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago
lotuscolley/jupyter_notebook_with_r
- binder/environment.yml
Size: 463 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago
ajodeh-juma/rvfv-amplicon-seq
A simple pipeline for Rift Valley fever virus consensus genome generation from amplicon sequencing- 1.3.0.* environment.yml
Size: 11.4 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
omicsclass/biodocker
docker images for bioinformatics- pop-evol-gwas/environment.yml
Size: 59.2 MB - Last synced: 11 months ago - Pushed: over 1 year ago
IBM/PrecisionAquaculture.jl
machine learning interrogation of aquaculture datasets- environment.yml
Size: 21.6 MB - Last synced: about 1 month ago - Pushed: over 2 years ago
esbenlykke/drought_index
A project to practice reproducible research practices while studiyng the state of drought around the world.- environment.yml
Size: 124 MB - Last synced: about 1 month ago - Pushed: about 1 month ago
AlfredUg/QuasiFlow
A Nextflow Pipeline for Analysis of NGS-based HIV Drug Resistance Data- conf/environment.yml
Size: 1.16 MB - Last synced: 8 months ago - Pushed: 8 months ago
arcus/intro_to_stats_in_r
Materials for the Intro to Stats in R talk for CHOP R User Group- environment.yml
Size: 21.8 MB - Last synced: 7 months ago - Pushed: 7 months ago
ICAN-aneurysms/RIA-predict
This repository aims at reproducing our intracranial aneurysm data analysis pipeline, under publication.- binder/environment.yml
Size: 8.9 MB - Last synced: 24 days ago - Pushed: about 1 year ago
BodenmillerGroup/bbsnippets
This repository contains general examples, code snippets and guidelines.- snippets/varia/heatscatter_example/environment.yml
Size: 57.1 MB - Last synced: 29 days ago - Pushed: over 2 years ago
ecmaggioncalda/2022_07_06_Kleb_GWAS_MIC
- config/environment.yml
Size: 306 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago
kirbyvisp/marmo
MARMO is a Modular and Robust pipeline for iMmune single-cell multi-Omics implemented in Snakemake.- 1.1.1 environment.yaml
Size: 2.86 MB - Last synced: over 1 year ago
Fraunhofer-ITMP/SASC
SASC: A Simple Approach to Synthetic Cohorts for generating longitudinal observational patient cohorts from COVID-19 clinical data- 1.3.* binder/environment.yml
Size: 1.22 MB - Last synced: about 1 year ago - Pushed: over 2 years ago
Abraham-newbie/Replication
Replication of Barrera et. al. and further extension.- environment.yml
Size: 16.7 MB - Last synced: 11 months ago - Pushed: almost 2 years ago
wrightdw/COG-UK-ME
COG-UK Mutation Explorer- 1.3.1 environment.yml
Size: 105 MB - Last synced: 3 months ago - Pushed: 3 months ago