Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

Package Usage: cran: DOSE

View more package details: https://packages.ecosyste.ms/registries/cran.r-project.org/packages/DOSE

Dependent Repos 62

vladpetyuk/celegans.aging
example of transparent and reproducible data analysis
  • >= 2.7.6 DESCRIPTION

Size: 142 KB - Last synced: 10 months ago - Pushed: almost 9 years ago

GangLiLab/genekitr
🧬 Gene analysis toolkit based on R
  • * DESCRIPTION

Size: 83.1 MB - Last synced: 10 months ago - Pushed: 10 months ago

YuLab-SMU/clusterProfiler
:bar_chart: A universal enrichment tool for interpreting omics data
  • >= 3.23.2 DESCRIPTION

Size: 15.1 MB - Last synced: 11 days ago - Pushed: 12 days ago

YuLab-SMU/enrichplot
Visualization of Functional Enrichment Result
  • >= 3.16.0 DESCRIPTION

Size: 658 KB - Last synced: 11 days ago - Pushed: 12 days ago

junjunlab/GseaVis
An implement R package to visualize GSEA results
  • * DESCRIPTION

Size: 3.16 MB - Last synced: about 1 month ago - Pushed: 5 months ago

UMMS-Biocore/debrowser
Differential Count Data Analysis Toolbox
  • * DESCRIPTION

Size: 38.7 MB - Last synced: 20 days ago - Pushed: 4 months ago

rseng/rsepedia-analysis
Exploring clustering of research software encyclopedia entries
  • * _repos/github/Dulab2020/ARMT/DESCRIPTION
  • * _repos/github/IMB-Computational-Genomics-Lab/scGPS/DESCRIPTION

Size: 435 MB - Last synced: 11 days ago - Pushed: 12 days ago

hbc/bcbioRNASeq
R package for bcbio RNA-seq analysis.
  • * DESCRIPTION

Size: 318 MB - Last synced: about 1 month ago - Pushed: about 2 months ago

YuLab-SMU/GOSemSim
:golf: GO-terms Semantic Similarity Measures
  • * DESCRIPTION

Size: 27.4 MB - Last synced: 11 days ago - Pushed: 12 days ago

jgockley62/igraphNetworkExpansion
A sandbox repository for Pathway Commons
  • * DESCRIPTION

Size: 307 MB - Last synced: 8 months ago - Pushed: about 2 years ago

BimberLab/geneSetVis
gene-set enrichment visualization.
  • * DESCRIPTION

Size: 84.7 MB - Last synced: about 1 month ago - Pushed: over 2 years ago

ok-gitr/geneSetVis
gene-set enrichment visualization.
  • * DESCRIPTION

Size: 84.8 MB - Last synced: about 1 year ago - Pushed: over 3 years ago

zhangjunpeng411/miRspongeR
Identification and analysis of miRNA sponge regulation
  • * DESCRIPTION

Size: 635 KB - Last synced: 5 days ago - Pushed: over 1 year ago

kmezhoud/bioCancer
:cancer: :free: A Shiny App for Interactive Multi-OMICS Cancer Data Visualization and analysis
  • * DESCRIPTION

Size: 829 MB - Last synced: 2 months ago - Pushed: 3 months ago

r-pkg-team/r-bioc-gosemsim
GO-terms semantic similarity measures
  • * DESCRIPTION

Last synced: 11 months ago

sunyumail93/easyRNAseqDE
An R package for RNAseq differential expression analysis and visualization, in an easy and reproducible way.
  • * DESCRIPTION

Size: 55.5 MB - Last synced: about 1 year ago - Pushed: about 1 year ago

YuanlongHu/immcp
Polypharmacology Toolkit for Traditional Chinese Medicine Research
  • * DESCRIPTION

Size: 10.4 MB - Last synced: 3 months ago - Pushed: over 1 year ago

LabTranslationalArchitectomics/expressyouRcell
expressyouRcell generates animations of pictographic representations of cells, or pictograms, providing a convenient and intuitive method for visualizing and understanding time course variations in cellular compartments.
  • >= 3.16.0 DESCRIPTION

Size: 7.36 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago

ygc/reactomepa
  • * DESCRIPTION

Size: 236 KB - Last synced: over 1 year ago

libiqing77/GDCRNATools
  • * DESCRIPTION

Size: 5.4 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago

gsx-ucas/QRAP
An R package for analysing RNA-seq Data based shiny
  • >= 3.16.0 DESCRIPTION

Size: 290 MB - Last synced: 3 months ago - Pushed: 11 months ago

wenliangz/clusterProfiler Fork of YuLab-SMU/clusterProfiler
statistical analysis and visulization of functional profiles for genes and gene clusters
  • * DESCRIPTION

Size: 5.82 MB - Last synced: about 1 year ago - Pushed: over 8 years ago

cbg-ethz/pareg
Pathway enrichment computations using a regularized regression approach to incorporate inter-pathway relations in the statistical model.
  • * DESCRIPTION

Size: 19.5 MB - Last synced: 5 days ago - Pushed: 11 months ago

ELELAB/MoonlightR
  • * DESCRIPTION

Size: 23.3 MB - Last synced: 11 days ago - Pushed: 11 days ago

PNNL-Comp-Mass-Spec/MSnSet.utils Fork of vladpetyuk/vp.misc
custom wrappers of frequently used R code
  • * DESCRIPTION

Size: 65.9 MB - Last synced: 6 days ago - Pushed: 6 days ago

jokergoo/cola
A General Framework for Consensus Partitioning
  • * DESCRIPTION

Size: 212 MB - Last synced: 17 days ago - Pushed: 3 months ago

kassambara/stepprofiler
  • * DESCRIPTION

Size: 10.2 MB - Last synced: 7 months ago - Pushed: almost 3 years ago

rli012/GDCRNATools
GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, miRNA and mRNA data in GDC
  • * DESCRIPTION

Size: 16.9 MB - Last synced: 7 months ago - Pushed: 9 months ago

elsayed-lab/hpgltools
A collection of R functions to aid in host-pathogen genomic research
  • * DESCRIPTION

Size: 555 MB - Last synced: 20 days ago - Pushed: 20 days ago

michaelkook/GOSemSim
GO-terms Semantic Similarity Measures
  • * DESCRIPTION

Size: 3.39 MB - Last synced: about 1 year ago - Pushed: over 11 years ago

jokergoo/simplifyEnrichment
Simplify functional enrichment results
  • * DESCRIPTION

Size: 122 MB - Last synced: 17 days ago - Pushed: 7 months ago

vladpetyuk/toypack
  • >= 2.7.6 DESCRIPTION

Size: 141 KB - Last synced: 10 months ago - Pushed: almost 9 years ago

XMUR/ChIPseeker
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/ChIPseeker.html Contributions: https://github.com/GuangchuangYu/ChIPseeker. Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=ChIPseeker or https://github.com/GuangchuangYu/ChIPseeker/issues.
  • * DESCRIPTION

Size: 5.42 MB - Last synced: 7 months ago - Pushed: almost 9 years ago

NurSyatila/DAGItoolsr
Implements methods to identify and analyse disease-associated genes. Several options are available: (1) gene search from databases, and (2) gene search from differential expression data. It also provides options to predict protein-protein interaction (via STRINGdb) and perform functional enrichment (via clusterProfiler).
  • >= 3.22.1 DESCRIPTION

Size: 185 KB - Last synced: 7 months ago - Pushed: over 1 year ago

huerqiang/clusterProfiler Fork of YuLab-SMU/clusterProfiler
:bar_chart: statistical analysis and visualization of functional profiles for genes and gene clusters
  • >= 3.23.2 DESCRIPTION

Size: 15 MB - Last synced: 8 months ago - Pushed: 8 months ago

YuLab-SMU/meshes
:stethoscope: MeSH Enrichment and Semantic analyses
  • * DESCRIPTION

Size: 1.71 MB - Last synced: 11 days ago - Pushed: 12 days ago

WTaoUMC/RegEnrich
  • * DESCRIPTION

Size: 2.3 MB - Last synced: 7 months ago - Pushed: almost 3 years ago

ShellyCoder/cellcall
inferring cell-cell communication from scRNA-seq of ligand-receptor
  • >= 3.12.0 DESCRIPTION

Size: 16.4 MB - Last synced: 3 months ago - Pushed: 8 months ago

kharchenkolab/cacoa
Single-cell Case Control Analysis
  • * DESCRIPTION

Size: 5.59 MB - Last synced: 3 months ago - Pushed: 3 months ago

keita-iida/ASURATDB
  • * DESCRIPTION

Size: 160 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

WubingZhang/MAGeCKFlute
Integrative analysis pipeline for pooled CRISPR functional genetic screens
  • * DESCRIPTION

Size: 228 MB - Last synced: 5 months ago - Pushed: 5 months ago

YuLab-SMU/ReactomePA
Reactome Pathway Analysis
  • >= 3.5.1 DESCRIPTION

Size: 5.47 MB - Last synced: 11 days ago - Pushed: 12 days ago

paulklemm/mygo
Create Report for mus musculus dataset of GO-term analysis using clusterProfiler
  • * DESCRIPTION

Size: 125 KB - Last synced: about 1 month ago - Pushed: 11 months ago

ssayols/rrvgo
Reduce + Visualize Gene Ontology
  • * DESCRIPTION

Size: 16 MB - Last synced: 14 days ago - Pushed: 3 months ago

Kuanhao-Chao/RNASeqR
đź“Š An R package of RNA-seq workflow
  • * DESCRIPTION

Size: 29.6 MB - Last synced: about 1 year ago - Pushed: about 2 years ago

Feng-Zhang/RNAflow
  • >= 3.16.0 DESCRIPTION

Size: 623 KB - Last synced: 10 months ago - Pushed: 10 months ago

CiiM-Bioinformatics-group/TIGENS
  • * DESCRIPTION

Size: 354 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

rikenbit/scTensor
R package for detection of cell-cell interaction using Non-negative Tensor Decomposition
  • * DESCRIPTION

Size: 18.2 MB - Last synced: 3 months ago - Pushed: over 1 year ago

sk-sahu/sig-bio-shiny
A standalone interactive application for detecting biological significance on a set of genes
  • >= 3.13.1 DESCRIPTION

Size: 4.56 MB - Last synced: 3 months ago - Pushed: about 3 years ago

systemsimmunology/regenrich
  • * DESCRIPTION

Size: 13.8 MB - Last synced: over 1 year ago

swcyo/GSEAbar
Barplot for GSEA result
  • * DESCRIPTION

Size: 445 KB - Last synced: 5 months ago - Pushed: over 1 year ago

chaokuanhao/rnaseqr
  • * DESCRIPTION

Size: 29.9 MB - Last synced: over 1 year ago

satishgaurav/discoverapp_rubiustx
  • * packrat/lib/x86_64-pc-linux-gnu/3.6.3/GOSemSim/DESCRIPTION
  • >= 3.5.1 packrat/lib/x86_64-pc-linux-gnu/3.6.3/clusterProfiler/DESCRIPTION
  • >= 3.5.1 packrat/lib/x86_64-pc-linux-gnu/3.6.3/enrichplot/DESCRIPTION

Size: 817 MB - Last synced: over 1 year ago

hjanime/ChIPseeker Fork of YuLab-SMU/ChIPseeker
ChIP peak Annotation, Comparison and Visualization
  • * DESCRIPTION

Size: 5.3 MB - Last synced: about 1 year ago - Pushed: almost 9 years ago

huerqiang/enrichplot Fork of YuLab-SMU/enrichplot
Visualization of Functional Enrichment Result
  • >= 3.16.0 DESCRIPTION

Size: 631 KB - Last synced: about 1 month ago - Pushed: about 1 month ago

kojix2/enrichplot Fork of YuLab-SMU/enrichplot
Visualization of Functional Enrichment Result
  • >= 3.16.0 DESCRIPTION

Size: 600 KB - Last synced: about 1 month ago - Pushed: about 1 year ago

jmw86069/multienrichjam
Analysis and Visualization of Multiple Gene Set Enrichments
  • * DESCRIPTION

Size: 99.8 MB - Last synced: 10 days ago - Pushed: 10 days ago

compbioNJU/CellFunTopic
Functional Annotation for Single-Cell Transcriptomics
  • * DESCRIPTION

Size: 26.1 MB - Last synced: 12 months ago - Pushed: 12 months ago

seoanezonjic/ExpHunterSuite Fork of Isabelggayte/DEgenesHunter
RNA-seq gene expression analysis suite
  • * DESCRIPTION

Size: 93.6 MB - Last synced: 10 days ago - Pushed: 10 days ago

abelew/hpgltools Fork of elsayed-lab/hpgltools
A collection of R functions to aid in host-pathogen genomic research
  • * DESCRIPTION

Size: 553 MB - Last synced: 6 days ago - Pushed: 7 days ago

AudreyBeaufils/DAFE
Cette application Rshiny est capale de réaliser l'analyse différentielle et enrichissement fonctionnelle
  • * DESCRIPTION

Size: 188 KB - Last synced: 8 months ago - Pushed: 8 months ago

CO-DKFZ/cola
  • * DESCRIPTION

Size: 187 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

aarongowins/yplot
Yu's plot utilities
  • * DESCRIPTION

Size: 816 KB - Last synced: 2 months ago - Pushed: almost 9 years ago

xdsstone/clusterProfiler Fork of YuLab-SMU/clusterProfiler
statistical analysis and visulization of functional profiles for genes and gene clusters
  • * DESCRIPTION

Size: 5.81 MB - Last synced: about 1 year ago - Pushed: almost 9 years ago

kassambara/ezRNAseq
  • * DESCRIPTION

Size: 10.3 MB - Last synced: about 1 year ago - Pushed: about 7 years ago

Yutong441/TBdev
Infer trophoblast trajectory using single cell RNA sequencing
  • * DESCRIPTION

Size: 1.11 MB - Last synced: 10 months ago - Pushed: over 2 years ago

jdreyf/jdcbioinfo
Miscellaneous R functions helpful for analysis. Not built for public consumption.
  • * DESCRIPTION

Size: 304 KB - Last synced: 23 days ago - Pushed: 24 days ago

xtmgah/ChIPseeker-1 Fork of YuLab-SMU/ChIPseeker
ChIP peak Annotation, Comparison and Visualization
  • * DESCRIPTION

Size: 6.83 MB - Last synced: 10 months ago - Pushed: over 8 years ago

Jun-Lizst/MAGeCKFlute
Integrative analysis pipeline for pooled CRISPR functional genetic screens
  • * DESCRIPTION

Size: 35.7 MB - Last synced: about 1 year ago - Pushed: over 5 years ago

klugem/ChIPseeker Fork of YuLab-SMU/ChIPseeker
ChIP peak Annotation, Comparison and Visualization
  • * DESCRIPTION

Size: 6.85 MB - Last synced: 11 months ago - Pushed: over 8 years ago

alyst/GOSemSim Fork of YuLab-SMU/GOSemSim
GO-terms Semantic Similarity Measures
  • * DESCRIPTION

Size: 1.61 MB - Last synced: about 1 year ago - Pushed: over 9 years ago

NicWir/VisomX
An R package for User-Friendly and Comprehensive Analysis and Visualization of Omics Data
  • * DESCRIPTION

Size: 19.2 MB - Last synced: 3 months ago - Pushed: 3 months ago

GuangchuangYu/bioc-release
release version of my Bioconductor packages
  • * 2X/2.10/GOSemSim/DESCRIPTION
  • * 2X/2.10/ReactomePA/DESCRIPTION
  • * 2X/2.10/clusterProfiler/DESCRIPTION
  • * 2X/2.11/GOSemSim/DESCRIPTION
  • * 2X/2.11/clusterProfiler/DESCRIPTION
  • * 2X/2.12/GOSemSim/DESCRIPTION
  • * 2X/2.12/ReactomePA/DESCRIPTION
  • * 2X/2.12/clusterProfiler/DESCRIPTION
  • * 2X/2.13/GOSemSim/DESCRIPTION
  • * 2X/2.13/ReactomePA/DESCRIPTION
  • * 2X/2.13/clusterProfiler/DESCRIPTION
  • * 2X/2.14/ChIPseeker/DESCRIPTION
  • * 2X/2.14/GOSemSim/DESCRIPTION
  • * 2X/2.14/ReactomePA/DESCRIPTION
  • * 2X/2.14/clusterProfiler/DESCRIPTION
  • * 2X/2.9/GOSemSim/DESCRIPTION
  • * 2X/2.9/clusterProfiler/DESCRIPTION
  • * 3.0/ChIPseeker/DESCRIPTION
  • * 3.0/GOSemSim/DESCRIPTION
  • * 3.0/ReactomePA/DESCRIPTION
  • * 3.0/clusterProfiler/DESCRIPTION
  • * 3.1/ChIPseeker/DESCRIPTION
  • * 3.1/GOSemSim/DESCRIPTION
  • * 3.1/ReactomePA/DESCRIPTION
  • * 3.1/clusterProfiler/DESCRIPTION

Size: 39.8 MB - Last synced: 3 months ago - Pushed: almost 7 years ago