Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
Package Usage: cran: DOSE
View more package details: https://packages.ecosyste.ms/registries/cran.r-project.org/packages/DOSE
Dependent Repos 62
vladpetyuk/celegans.aging
example of transparent and reproducible data analysis- >= 2.7.6 DESCRIPTION
Size: 142 KB - Last synced: 10 months ago - Pushed: almost 9 years ago
GangLiLab/genekitr
🧬 Gene analysis toolkit based on R- * DESCRIPTION
Size: 83.1 MB - Last synced: 10 months ago - Pushed: 10 months ago
YuLab-SMU/clusterProfiler
:bar_chart: A universal enrichment tool for interpreting omics data- >= 3.23.2 DESCRIPTION
Size: 15.1 MB - Last synced: 11 days ago - Pushed: 12 days ago
YuLab-SMU/enrichplot
Visualization of Functional Enrichment Result- >= 3.16.0 DESCRIPTION
Size: 658 KB - Last synced: 11 days ago - Pushed: 12 days ago
junjunlab/GseaVis
An implement R package to visualize GSEA results- * DESCRIPTION
Size: 3.16 MB - Last synced: about 1 month ago - Pushed: 5 months ago
UMMS-Biocore/debrowser
Differential Count Data Analysis Toolbox- * DESCRIPTION
Size: 38.7 MB - Last synced: 20 days ago - Pushed: 4 months ago
rseng/rsepedia-analysis
Exploring clustering of research software encyclopedia entries- * _repos/github/Dulab2020/ARMT/DESCRIPTION
- * _repos/github/IMB-Computational-Genomics-Lab/scGPS/DESCRIPTION
Size: 435 MB - Last synced: 11 days ago - Pushed: 12 days ago
hbc/bcbioRNASeq
R package for bcbio RNA-seq analysis.- * DESCRIPTION
Size: 318 MB - Last synced: about 1 month ago - Pushed: about 2 months ago
YuLab-SMU/GOSemSim
:golf: GO-terms Semantic Similarity Measures- * DESCRIPTION
Size: 27.4 MB - Last synced: 11 days ago - Pushed: 12 days ago
jgockley62/igraphNetworkExpansion
A sandbox repository for Pathway Commons- * DESCRIPTION
Size: 307 MB - Last synced: 8 months ago - Pushed: about 2 years ago
BimberLab/geneSetVis
gene-set enrichment visualization.- * DESCRIPTION
Size: 84.7 MB - Last synced: about 1 month ago - Pushed: over 2 years ago
ok-gitr/geneSetVis
gene-set enrichment visualization.- * DESCRIPTION
Size: 84.8 MB - Last synced: about 1 year ago - Pushed: over 3 years ago
zhangjunpeng411/miRspongeR
Identification and analysis of miRNA sponge regulation- * DESCRIPTION
Size: 635 KB - Last synced: 5 days ago - Pushed: over 1 year ago
kmezhoud/bioCancer
:cancer: :free: A Shiny App for Interactive Multi-OMICS Cancer Data Visualization and analysis- * DESCRIPTION
Size: 829 MB - Last synced: 2 months ago - Pushed: 3 months ago
r-pkg-team/r-bioc-gosemsim
GO-terms semantic similarity measures- * DESCRIPTION
Last synced: 11 months ago
sunyumail93/easyRNAseqDE
An R package for RNAseq differential expression analysis and visualization, in an easy and reproducible way.- * DESCRIPTION
Size: 55.5 MB - Last synced: about 1 year ago - Pushed: about 1 year ago
YuanlongHu/immcp
Polypharmacology Toolkit for Traditional Chinese Medicine Research- * DESCRIPTION
Size: 10.4 MB - Last synced: 3 months ago - Pushed: over 1 year ago
LabTranslationalArchitectomics/expressyouRcell
expressyouRcell generates animations of pictographic representations of cells, or pictograms, providing a convenient and intuitive method for visualizing and understanding time course variations in cellular compartments.- >= 3.16.0 DESCRIPTION
Size: 7.36 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago
libiqing77/GDCRNATools
- * DESCRIPTION
Size: 5.4 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago
gsx-ucas/QRAP
An R package for analysing RNA-seq Data based shiny- >= 3.16.0 DESCRIPTION
Size: 290 MB - Last synced: 3 months ago - Pushed: 11 months ago
wenliangz/clusterProfiler Fork of YuLab-SMU/clusterProfiler
statistical analysis and visulization of functional profiles for genes and gene clusters- * DESCRIPTION
Size: 5.82 MB - Last synced: about 1 year ago - Pushed: over 8 years ago
cbg-ethz/pareg
Pathway enrichment computations using a regularized regression approach to incorporate inter-pathway relations in the statistical model.- * DESCRIPTION
Size: 19.5 MB - Last synced: 5 days ago - Pushed: 11 months ago
PNNL-Comp-Mass-Spec/MSnSet.utils Fork of vladpetyuk/vp.misc
custom wrappers of frequently used R code- * DESCRIPTION
Size: 65.9 MB - Last synced: 6 days ago - Pushed: 6 days ago
jokergoo/cola
A General Framework for Consensus Partitioning- * DESCRIPTION
Size: 212 MB - Last synced: 17 days ago - Pushed: 3 months ago
kassambara/stepprofiler
- * DESCRIPTION
Size: 10.2 MB - Last synced: 7 months ago - Pushed: almost 3 years ago
rli012/GDCRNATools
GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, miRNA and mRNA data in GDC- * DESCRIPTION
Size: 16.9 MB - Last synced: 7 months ago - Pushed: 9 months ago
elsayed-lab/hpgltools
A collection of R functions to aid in host-pathogen genomic research- * DESCRIPTION
Size: 555 MB - Last synced: 20 days ago - Pushed: 20 days ago
michaelkook/GOSemSim
GO-terms Semantic Similarity Measures- * DESCRIPTION
Size: 3.39 MB - Last synced: about 1 year ago - Pushed: over 11 years ago
jokergoo/simplifyEnrichment
Simplify functional enrichment results- * DESCRIPTION
Size: 122 MB - Last synced: 17 days ago - Pushed: 7 months ago
vladpetyuk/toypack
- >= 2.7.6 DESCRIPTION
Size: 141 KB - Last synced: 10 months ago - Pushed: almost 9 years ago
XMUR/ChIPseeker
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/ChIPseeker.html Contributions: https://github.com/GuangchuangYu/ChIPseeker. Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=ChIPseeker or https://github.com/GuangchuangYu/ChIPseeker/issues.- * DESCRIPTION
Size: 5.42 MB - Last synced: 7 months ago - Pushed: almost 9 years ago
NurSyatila/DAGItoolsr
Implements methods to identify and analyse disease-associated genes. Several options are available: (1) gene search from databases, and (2) gene search from differential expression data. It also provides options to predict protein-protein interaction (via STRINGdb) and perform functional enrichment (via clusterProfiler).- >= 3.22.1 DESCRIPTION
Size: 185 KB - Last synced: 7 months ago - Pushed: over 1 year ago
huerqiang/clusterProfiler Fork of YuLab-SMU/clusterProfiler
:bar_chart: statistical analysis and visualization of functional profiles for genes and gene clusters- >= 3.23.2 DESCRIPTION
Size: 15 MB - Last synced: 8 months ago - Pushed: 8 months ago
YuLab-SMU/meshes
:stethoscope: MeSH Enrichment and Semantic analyses- * DESCRIPTION
Size: 1.71 MB - Last synced: 11 days ago - Pushed: 12 days ago
WTaoUMC/RegEnrich
- * DESCRIPTION
Size: 2.3 MB - Last synced: 7 months ago - Pushed: almost 3 years ago
ShellyCoder/cellcall
inferring cell-cell communication from scRNA-seq of ligand-receptor- >= 3.12.0 DESCRIPTION
Size: 16.4 MB - Last synced: 3 months ago - Pushed: 8 months ago
kharchenkolab/cacoa
Single-cell Case Control Analysis- * DESCRIPTION
Size: 5.59 MB - Last synced: 3 months ago - Pushed: 3 months ago
keita-iida/ASURATDB
- * DESCRIPTION
Size: 160 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
WubingZhang/MAGeCKFlute
Integrative analysis pipeline for pooled CRISPR functional genetic screens- * DESCRIPTION
Size: 228 MB - Last synced: 5 months ago - Pushed: 5 months ago
YuLab-SMU/ReactomePA
Reactome Pathway Analysis- >= 3.5.1 DESCRIPTION
Size: 5.47 MB - Last synced: 11 days ago - Pushed: 12 days ago
paulklemm/mygo
Create Report for mus musculus dataset of GO-term analysis using clusterProfiler- * DESCRIPTION
Size: 125 KB - Last synced: about 1 month ago - Pushed: 11 months ago
ssayols/rrvgo
Reduce + Visualize Gene Ontology- * DESCRIPTION
Size: 16 MB - Last synced: 14 days ago - Pushed: 3 months ago
Kuanhao-Chao/RNASeqR
đź“Š An R package of RNA-seq workflow- * DESCRIPTION
Size: 29.6 MB - Last synced: about 1 year ago - Pushed: about 2 years ago
Feng-Zhang/RNAflow
- >= 3.16.0 DESCRIPTION
Size: 623 KB - Last synced: 10 months ago - Pushed: 10 months ago
CiiM-Bioinformatics-group/TIGENS
- * DESCRIPTION
Size: 354 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
rikenbit/scTensor
R package for detection of cell-cell interaction using Non-negative Tensor Decomposition- * DESCRIPTION
Size: 18.2 MB - Last synced: 3 months ago - Pushed: over 1 year ago
sk-sahu/sig-bio-shiny
A standalone interactive application for detecting biological significance on a set of genes- >= 3.13.1 DESCRIPTION
Size: 4.56 MB - Last synced: 3 months ago - Pushed: about 3 years ago
swcyo/GSEAbar
Barplot for GSEA result- * DESCRIPTION
Size: 445 KB - Last synced: 5 months ago - Pushed: over 1 year ago
satishgaurav/discoverapp_rubiustx
- * packrat/lib/x86_64-pc-linux-gnu/3.6.3/GOSemSim/DESCRIPTION
- >= 3.5.1 packrat/lib/x86_64-pc-linux-gnu/3.6.3/clusterProfiler/DESCRIPTION
- >= 3.5.1 packrat/lib/x86_64-pc-linux-gnu/3.6.3/enrichplot/DESCRIPTION
Size: 817 MB - Last synced: over 1 year ago
hjanime/ChIPseeker Fork of YuLab-SMU/ChIPseeker
ChIP peak Annotation, Comparison and Visualization- * DESCRIPTION
Size: 5.3 MB - Last synced: about 1 year ago - Pushed: almost 9 years ago
huerqiang/enrichplot Fork of YuLab-SMU/enrichplot
Visualization of Functional Enrichment Result- >= 3.16.0 DESCRIPTION
Size: 631 KB - Last synced: about 1 month ago - Pushed: about 1 month ago
kojix2/enrichplot Fork of YuLab-SMU/enrichplot
Visualization of Functional Enrichment Result- >= 3.16.0 DESCRIPTION
Size: 600 KB - Last synced: about 1 month ago - Pushed: about 1 year ago
jmw86069/multienrichjam
Analysis and Visualization of Multiple Gene Set Enrichments- * DESCRIPTION
Size: 99.8 MB - Last synced: 10 days ago - Pushed: 10 days ago
compbioNJU/CellFunTopic
Functional Annotation for Single-Cell Transcriptomics- * DESCRIPTION
Size: 26.1 MB - Last synced: 12 months ago - Pushed: 12 months ago
seoanezonjic/ExpHunterSuite Fork of Isabelggayte/DEgenesHunter
RNA-seq gene expression analysis suite- * DESCRIPTION
Size: 93.6 MB - Last synced: 10 days ago - Pushed: 10 days ago
abelew/hpgltools Fork of elsayed-lab/hpgltools
A collection of R functions to aid in host-pathogen genomic research- * DESCRIPTION
Size: 553 MB - Last synced: 6 days ago - Pushed: 7 days ago
AudreyBeaufils/DAFE
Cette application Rshiny est capale de réaliser l'analyse différentielle et enrichissement fonctionnelle- * DESCRIPTION
Size: 188 KB - Last synced: 8 months ago - Pushed: 8 months ago
aarongowins/yplot
Yu's plot utilities- * DESCRIPTION
Size: 816 KB - Last synced: 2 months ago - Pushed: almost 9 years ago
xdsstone/clusterProfiler Fork of YuLab-SMU/clusterProfiler
statistical analysis and visulization of functional profiles for genes and gene clusters- * DESCRIPTION
Size: 5.81 MB - Last synced: about 1 year ago - Pushed: almost 9 years ago
kassambara/ezRNAseq
- * DESCRIPTION
Size: 10.3 MB - Last synced: about 1 year ago - Pushed: about 7 years ago
Yutong441/TBdev
Infer trophoblast trajectory using single cell RNA sequencing- * DESCRIPTION
Size: 1.11 MB - Last synced: 10 months ago - Pushed: over 2 years ago
jdreyf/jdcbioinfo
Miscellaneous R functions helpful for analysis. Not built for public consumption.- * DESCRIPTION
Size: 304 KB - Last synced: 23 days ago - Pushed: 24 days ago
xtmgah/ChIPseeker-1 Fork of YuLab-SMU/ChIPseeker
ChIP peak Annotation, Comparison and Visualization- * DESCRIPTION
Size: 6.83 MB - Last synced: 10 months ago - Pushed: over 8 years ago
Jun-Lizst/MAGeCKFlute
Integrative analysis pipeline for pooled CRISPR functional genetic screens- * DESCRIPTION
Size: 35.7 MB - Last synced: about 1 year ago - Pushed: over 5 years ago
klugem/ChIPseeker Fork of YuLab-SMU/ChIPseeker
ChIP peak Annotation, Comparison and Visualization- * DESCRIPTION
Size: 6.85 MB - Last synced: 11 months ago - Pushed: over 8 years ago
alyst/GOSemSim Fork of YuLab-SMU/GOSemSim
GO-terms Semantic Similarity Measures- * DESCRIPTION
Size: 1.61 MB - Last synced: about 1 year ago - Pushed: over 9 years ago
NicWir/VisomX
An R package for User-Friendly and Comprehensive Analysis and Visualization of Omics Data- * DESCRIPTION
Size: 19.2 MB - Last synced: 3 months ago - Pushed: 3 months ago
GuangchuangYu/bioc-release
release version of my Bioconductor packages- * 2X/2.10/GOSemSim/DESCRIPTION
- * 2X/2.10/ReactomePA/DESCRIPTION
- * 2X/2.10/clusterProfiler/DESCRIPTION
- * 2X/2.11/GOSemSim/DESCRIPTION
- * 2X/2.11/clusterProfiler/DESCRIPTION
- * 2X/2.12/GOSemSim/DESCRIPTION
- * 2X/2.12/ReactomePA/DESCRIPTION
- * 2X/2.12/clusterProfiler/DESCRIPTION
- * 2X/2.13/GOSemSim/DESCRIPTION
- * 2X/2.13/ReactomePA/DESCRIPTION
- * 2X/2.13/clusterProfiler/DESCRIPTION
- * 2X/2.14/ChIPseeker/DESCRIPTION
- * 2X/2.14/GOSemSim/DESCRIPTION
- * 2X/2.14/ReactomePA/DESCRIPTION
- * 2X/2.14/clusterProfiler/DESCRIPTION
- * 2X/2.9/GOSemSim/DESCRIPTION
- * 2X/2.9/clusterProfiler/DESCRIPTION
- * 3.0/ChIPseeker/DESCRIPTION
- * 3.0/GOSemSim/DESCRIPTION
- * 3.0/ReactomePA/DESCRIPTION
- * 3.0/clusterProfiler/DESCRIPTION
- * 3.1/ChIPseeker/DESCRIPTION
- * 3.1/GOSemSim/DESCRIPTION
- * 3.1/ReactomePA/DESCRIPTION
- * 3.1/clusterProfiler/DESCRIPTION
Size: 39.8 MB - Last synced: 3 months ago - Pushed: almost 7 years ago