Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
Package Usage: cran: DatabaseConnector
Connecting to Various Database Platforms
24 versions
Latest release: 7 months ago
5 dependent packages
3,490 downloads last month
View more package details: https://packages.ecosyste.ms/registries/cran.r-project.org/packages/DatabaseConnector
View more repository details: https://repos.ecosyste.ms/hosts/GitHub/repositories/OHDSI%2FDatabaseConnector
Dependent Repos 133
alondhe/Achilles_v4
- >= 1.11.4 DESCRIPTION
Size: 340 KB - Last synced: about 1 year ago - Pushed: over 6 years ago
OHDSI/DataQualityDashboard
A tool to help improve data quality standards in observational data science.- >= 2.0.2 DESCRIPTION
Size: 12.5 MB - Last synced: 13 days ago - Pushed: 13 days ago
OHDSI/CommonDataModel
Definition and DDLs for the OMOP Common Data Model (CDM)- * DESCRIPTION
Size: 21.8 MB - Last synced: about 2 months ago - Pushed: about 2 months ago
suchard-group/Better
- >= 4.0.0 DESCRIPTION
Size: 2.68 MB - Last synced: about 1 year ago - Pushed: about 1 year ago
OHDSI/Hades
Health Analytics Data-to-Evidence Suite (HADES): A collection of R packages for performing analytics against the Common Data Model.- * DESCRIPTION
Size: 47.8 MB - Last synced: 17 days ago - Pushed: 17 days ago
OHDSI/CohortMethod
An R package for performing new-user cohort studies in an observational database in the OMOP Common Data Model.- >= 4.0.0 DESCRIPTION
Size: 106 MB - Last synced: 1 day ago - Pushed: 2 days ago
OHDSI/FeatureExtraction
An R package for generating features (covariates) for a cohort using data in the Common Data Model.- >= 3.0.0 DESCRIPTION
Size: 29.2 MB - Last synced: 4 days ago - Pushed: 5 days ago
OHDSI/Aphrodite
[in development]- * DESCRIPTION
Size: 3.1 MB - Last synced: about 2 months ago - Pushed: almost 3 years ago
ohdsi-studies/Glp1ClrdEstimation
- >= 4.0.2 CohortDiagnostics/HydratedPackage/DESCRIPTION
- >= 4.0.2 GLP1ReproExac/HydratedPackage/DESCRIPTION
- >= 4.0.2 GLP1ReproExac/HydratedPackage_woICD9analysis/DESCRIPTION
- >= 4.0.2 GLP1ReproHosp/HydratedPackage/DESCRIPTION
- >= 4.0.2 GLP1ReproHospSulf/HydratedPackage/DESCRIPTION
- >= 4.0.2 GLP1ReproHospSulf/HydratedPackage_DEPRECATED/DESCRIPTION
- >= 4.0.2 GLP1ReproHospSulf/HydratedPackage_DEPRECATED2/DESCRIPTION
- >= 4.0.2 GLP1ReproNetwork/HydratedPackage/DESCRIPTION
- >= 4.0.2 GLP1ReproNetwork/HydratedPackage_Aug30weekend/DESCRIPTION
- >= 4.0.2 GLP1ReproNetwork/HydratedPackage_DEPRECATED_NonPharmetrics/DESCRIPTION
- >= 4.0.2 GLP1ReproNetworkSubset/HydratedPackage/DESCRIPTION
- >= 4.0.2 GLP1ReproNetworkSubset/HydratedPackage_2outcomes/DESCRIPTION
Size: 9.15 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago
National-COVID-Cohort-Collaborative/Phenotype_Data_Acquisition
The repository for code and documentation produced by the N3C Phenotype and Data Acquisition workstream- * Exporters/RExporter/DESCRIPTION
Size: 1.12 MB - Last synced: 6 months ago - Pushed: 6 months ago
OHDSI/OncologyWG
Oncology Working Group Repository- * NaaccrParser/DESCRIPTION
- >= 3.0.0 OncoRegimenFinder/DESCRIPTION
- >= 3.0.0 OncoRegimenFinder/DESCRIPTION
- >= 2.2.0 Studies/ohdsiBCv5/DESCRIPTION
Size: 120 MB - Last synced: 16 days ago - Pushed: 16 days ago
OHDSI/ETL-LambdaBuilder
CDM Builder leveraging AWS Lambda- >= 2.0.2 docs/IBM_CCAE_MDCR/Test Cases/DESCRIPTION
Size: 50.5 MB - Last synced: 2 days ago - Pushed: 3 days ago
OHDSI/AresIndexer
R package that creates the index and relevant files for an Ares deployment.- * DESCRIPTION
Size: 72.3 KB - Last synced: about 2 months ago - Pushed: about 2 months ago
EHDEN/CdmInspection
R Package to support quality control inspection of an OMOP-CDM instance- >= 3.0.0 DESCRIPTION
Size: 2.21 MB - Last synced: about 1 month ago - Pushed: about 1 month ago
OHDSI/Hydra
An R package and Java library for hydrating package skeletons into executable R study packages based on specifications in JSON format.- * DESCRIPTION
Size: 68.9 MB - Last synced: about 2 months ago - Pushed: about 1 year ago
OHDSI/SkeletonPredictionStudy
A skeleton package to use as a template for studies developing prediction models- >= 5.0.0 DESCRIPTION
Size: 1.09 MB - Last synced: about 2 months ago - Pushed: almost 2 years ago
OHDSI/PatientLevelPrediction
An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.- >= 5.0.0 DESCRIPTION
Size: 184 MB - Last synced: about 5 hours ago - Pushed: about 7 hours ago
ohdsi-studies/IUDEHREstimationStudy
Relative Risk of Cervical Neoplasms Associated with Copper and Levonorgestrel Secreting Intrauterine Devices: Real World Evidence from the OHDSI Network- >= 2.2.0 DESCRIPTION
- >= 2.2.0 additionalEstimationPackage/IUDClaimsEstimation/DESCRIPTION
Size: 376 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
OHDSI/ConceptSetDiagnostics
Package to assist with design diagnostics for concept set- >= 5.0.0 DESCRIPTION
Size: 347 KB - Last synced: 23 days ago - Pushed: 23 days ago
ohdsi-studies/LegendT2dm
- >= 3.0.0 DESCRIPTION
Size: 8.24 MB - Last synced: 17 days ago - Pushed: 18 days ago
OHDSI/CemConnector
An R package for connecting to the Common Evidence Model (CEM)- >= 4.0.0 DESCRIPTION
Size: 2.47 MB - Last synced: about 2 months ago - Pushed: 11 months ago
OHDSI/PhenotypeLibrary
A repository to store, organize and maintain the content of the OHDSI Phenotype library. OHDSI Forum post https://forums.ohdsi.org/t/ohdsi-phenotype-library-announcements/16910- * DESCRIPTION
Size: 36.8 MB - Last synced: about 2 months ago - Pushed: 5 months ago
OHDSI/Eunomia
An R package that facilitates access to a variety of OMOP CDM sample data sets.- >= 2.2.0 DESCRIPTION
Size: 45.7 MB - Last synced: about 1 month ago - Pushed: about 1 month ago
A1exanderAlexeyuk/OncologyRegimenFinder
- >= 3.0.0 DESCRIPTION
- >= 3.0.0 DESCRIPTION
Size: 6.76 MB - Last synced: over 1 year ago - Pushed: over 1 year ago
ohdsi-studies/AlcoholicLiverDisease
Alcoholic Liver Disease (ALD): Medication and clinical parameters associated with course of disease- * DESCRIPTION
Size: 442 KB - Last synced: about 1 year ago - Pushed: over 2 years ago
OHDSI/SkeletonComparativeEffectStudy
An R package that can be used as the starting point to implement a comparative effectiveness study.- >= 5.0.2 DESCRIPTION
Size: 6.92 MB - Last synced: about 2 months ago - Pushed: about 1 year ago
ohdsi-studies/EhdenCovidUseCase
The aim of this study is to estimate treatment effects for COVID-19 treatments using data from the EHDEN network and to combine these observational results with data from randomised studies.- >= 3.0.0 DESCRIPTION
Size: 3.85 MB - Last synced: about 1 year ago - Pushed: about 1 year ago
Tsemharb/PIONEERCharacterization
- >= 2.2.0 DESCRIPTION
Size: 232 KB - Last synced: 11 months ago - Pushed: about 3 years ago
ohdsi-studies/PCE
Network study validating the Pooled Cohort Equation Model- * DESCRIPTION
Size: 795 KB - Last synced: about 1 year ago - Pushed: about 3 years ago
ohdsi-studies/MusculoskeletalAEsAfterAIs
A Population level estimate (PLE) cohort study with prior A Cohort Diagnostics study to determine the feasibility using non-identifiable data mapped to the OHDSI Observational Medical Outcomes Partnership (OMOP) Common Data Model (CDM) to evaluate the risk of adverse musculoskeletal events in post-menopausal women taking AI compared to tamoxifen to treat breast cancer.- >= 2.2.0 MSKAI (Cohort Diagnostics)/DESCRIPTION
- >= 3.0.0 PLEMSKAI/DESCRIPTION
Size: 293 MB - Last synced: 8 months ago - Pushed: over 1 year ago
ohdsi-studies/Eumaeus
Evaluating Use of Methods for Adverse Event Under Surveillance (for vaccines)- >= 4.0.0 DESCRIPTION
Size: 2.7 MB - Last synced: 2 months ago - Pushed: 2 months ago
ohdsi-studies/VaccineEffectivenessEvaluation
- * DESCRIPTION
Size: 1.25 MB - Last synced: about 1 year ago - Pushed: about 3 years ago
ChungsooKim/MPHSafetyPrediction
- * development/DESCRIPTION
- >= 5.0.0 validation/DESCRIPTION
Size: 30.6 MB - Last synced: 5 months ago - Pushed: about 1 year ago
ohdsi-studies/Cervello
Covid-19 pandEmic impacts on mental health Related conditions Via multi-database nEtwork: a LongitutinaL Observational study (CERVELLO)- >= 2.2.0 DESCRIPTION
Size: 1.1 MB - Last synced: 8 months ago - Pushed: about 1 year ago
ohdsi-studies/ScyllaEstimation
This OHDSI network study assesses the comparative effectiveness and safety among treatments administered during hospitalization and prior to intensive services. It also assesses the comparative effectiveness and safety among treatments administered after COVID-19 positive testing or diagnosis in the outpatient setting without prior hospitalization.- >= 3.0.0 DESCRIPTION
Size: 4.96 MB - Last synced: 8 months ago - Pushed: about 3 years ago
odysseusinc/IncidenceRates
- >= 2.2.0 DESCRIPTION
Size: 2.49 MB - Last synced: about 1 year ago - Pushed: over 3 years ago
ohdsi-studies/Covid19PPIandH2RA
- >= 2.4.1 Covid19ComplicationPPIandH2RA/DESCRIPTION
- >= 2.4.1 Covid19IncidencePPIandH2RA/DESCRIPTION
Size: 593 KB - Last synced: 8 months ago - Pushed: over 3 years ago
dr-you-group/PredDrugInducedKidneyInjury
- * DESCRIPTION
Size: 1.28 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
OHDSI/RiskStratifiedEstimation
An R package for evaluating treatment effect heterogeneity using a risk-based approach.- >= 2.2.0 DESCRIPTION
Size: 5.78 MB - Last synced: about 2 months ago - Pushed: 12 months ago
FINNGEN/CohortOperationsShinyApp
CohortOperationsShinyApp- * DESCRIPTION
Size: 422 KB - Last synced: 3 months ago - Pushed: 3 months ago
OHDSI/IcTemporalPatternDiscovery
An R package for performing the IC Temporal Pattern Discovery method.- >= 1.11.4 DESCRIPTION
Size: 800 KB - Last synced: about 2 months ago - Pushed: over 1 year ago
darwin-eu-dev/CdmOnboarding
R Package to support the onboarding process of Data Partners in DARWIN-EU- >= 3.0.0 DESCRIPTION
Size: 5.5 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
ApproximateIdentity/hdps
- * DESCRIPTION
Size: 523 KB - Last synced: about 1 year ago - Pushed: almost 9 years ago
ohdsi-studies/ScyllaCharacterization
The aim of this study is to characterize all emerging drug therapies used in COVID-19 treatment.- >= 3.0.0 DESCRIPTION
Size: 1.43 MB - Last synced: 8 months ago - Pushed: about 3 years ago
OHDSI/ETL-CDMBuilder
ETL-CDMBuilder is a repo containing a .NET Core application to perform ETL to OMOP CDM for multiple databases- * man/CERNER/TEST CASES/CernerTesting/DESCRIPTION
- * man/OPTUM_EXTENDED/v5.0.1/TEST_CASES/DESCRIPTION
- * man/OPTUM_EXTENDED/v5.2.0/TEST_CASES/DESCRIPTION
- * man/OPTUM_EXTENDED/v5.3.0/TEST_CASES/DESCRIPTION
- * man/OPTUM_INTEGRATED/EHR_ONLY/TEST_SCRIPTS/DESCRIPTION
- * man/OPTUM_INTEGRATED/TEST_CASES/DESCRIPTION
- * man/OPTUM_PANTHER/v5.2.0/TEST_SCRIPTS/DESCRIPTION
- * man/OPTUM_PANTHER/v5.3.1/TEST_SCRIPTS/DESCRIPTION
- * man/PREMIER/TEST_CASES/PremierTests2/DESCRIPTION
Size: 121 MB - Last synced: about 2 months ago - Pushed: about 1 year ago
jreps/DescriptiveStudies
- >= 5.0.4 DESCRIPTION
Size: 169 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
SmartChartSuite/Registry-Database
Database Schema to Support SmartChart Registry- * omopv5_4_setup/CommonDataModel-5.4.0/DESCRIPTION
Size: 10.3 MB - Last synced: about 2 months ago - Pushed: 3 months ago
ohdsi-studies/Ceeamos
OHDSI study to investigate the risk of schizophrenia in hypertensive patients using ACE inhibitor- >= 3.0.0 CEEAMOS/DESCRIPTION
- >= 2.2.0 CeeamosCohortDiagnostics/DESCRIPTION
Size: 168 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago
Blanch-Font/SOPHIA
- * DESCRIPTION
Size: 338 KB - Last synced: about 1 year ago - Pushed: about 1 year ago
ohdsi-studies/Covid19CharacterizationCharybdis
Characterizing Health Associated Risks, and Your Baseline Disease In SARS-COV-2 (CHARYBDIS) - a study to describe the baseline demographic, clinical characteristics, treatments and outcomes of interest among individuals tested for SARS-CoV-2 and/or diagnosed with COVID-19 compared to Influenza patients from 2017-2018- >= 2.2.0 DESCRIPTION
Size: 2.77 MB - Last synced: 8 months ago - Pushed: almost 3 years ago
emaprojects/PhenotypeTesting2
- >= 2.2.0 DESCRIPTION
Size: 46.9 KB - Last synced: over 1 year ago - Pushed: over 2 years ago
mi-erasmusmc/TreatmentPatterns
An R package to analyze treatment patterns of a study population of interest- * DESCRIPTION
Size: 3.61 MB - Last synced: 11 months ago - Pushed: 12 months ago
OHDSI/TheBookOfOhdsi
The Book of OHDSI repository- >= 2.2.0 extras/CohortMethodAceiVsThz/DESCRIPTION
Size: 695 MB - Last synced: 24 days ago - Pushed: over 1 year ago
ohdsi-studies/HERACharacterization
Health equity research assessment (HERA) - a large scale characterization of gender and racial disparities- >= 3.0.0 DESCRIPTION
Size: 691 KB - Last synced: 8 months ago - Pushed: 11 months ago
OHDSI/Hercules
- * DESCRIPTION
Size: 145 KB - Last synced: about 2 months ago - Pushed: almost 10 years ago
OdyOSG/ariadne
OHDSI Characterization Study tools- >= 4.0.0 DESCRIPTION
Size: 57.6 KB - Last synced: 6 months ago - Pushed: over 1 year ago
ohdsi-studies/PioneerWatchfulWaiting
This study is part of the joint PIONEER - EHDEN - OHDSI studyathon in March 2021, and aims to advance understanding of clinical management and outcomes of watchful waiting in prostate cancer.- >= 2.2.0 DESCRIPTION
Size: 4.96 MB - Last synced: 5 months ago - Pushed: over 1 year ago
OHDSI/SkeletonCohortDiagnosticsStudy
An R package that can be used as the starting point to implement a cohort diagnostics study.- >= 5.0.0 DESCRIPTION
Size: 1.29 MB - Last synced: about 2 months ago - Pushed: about 2 months ago
OHDSI/PheValuator
An R package for evaluating phenotype algorithms.- * DESCRIPTION
- >= 2.2.0 examplePackage/DESCRIPTION
Size: 4.66 MB - Last synced: about 2 months ago - Pushed: 5 months ago
ohdsi-studies/CovidPhenotype
- >= 4.0.2 DESCRIPTION
Size: 383 KB - Last synced: about 1 year ago - Pushed: about 2 years ago
anthonysena/CohortMethod Fork of OHDSI/CohortMethod
An R package for performing new-user cohort studies in an observational database in the OMOP Common Data Model.- >= 4.0.0 DESCRIPTION
Size: 89.7 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
mi-erasmusmc/CovCoagBasePrediction
- * DESCRIPTION
Size: 993 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago
mi-erasmusmc/CovCoagEmaPrediction
- * DESCRIPTION
Size: 1010 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago
OHDSI/OhdsiStudy2
Treatment Pathways Study Protocol 12 Months- * DESCRIPTION
Size: 219 KB - Last synced: about 2 months ago - Pushed: over 9 years ago
jennifercelane/PLEMSKAI_working
for iterating on study design- >= 3.0.0 PLEFinal/DESCRIPTION
Size: 1.32 MB - Last synced: about 1 year ago - Pushed: about 3 years ago
anthonysena/DescriptiveStudies Fork of jreps/DescriptiveStudies
- >= 5.0.4 DESCRIPTION
Size: 169 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
oxford-pharmacoepi/CovCoagOutcomeDiagnostics
A CohortDiagnostics package to assess coagulopathy outcomes of interest- >= 2.2.0 diagCovCoagOutcomes/DESCRIPTION
Size: 3.74 MB - Last synced: 10 months ago - Pushed: about 3 years ago
OHDSI/SkeletonPredictionValidationStudy
A skeleton package to use as a template for studies validating prediction models- >= 5.0.0 DESCRIPTION
Size: 384 MB - Last synced: about 2 months ago - Pushed: about 2 years ago
OHDSI/Iris
IRIS provides a high-level descriptive summary of a population within a OMOP CDM-compliant database- >= 1.3.0 DESCRIPTION
Size: 65.4 KB - Last synced: about 2 months ago - Pushed: almost 8 years ago
OHDSI/StudyProtocolSandbox
This repository is for developing study packages for OHDSI studies. Once completed, they can be moved to the StudyProtocols repository.- >= 2.2.0 BB3rdVs2nd/DESCRIPTION
- * BookOfOhdsiPrediction/DESCRIPTION
Size: 384 MB - Last synced: about 2 months ago - Pushed: almost 3 years ago