Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

Package Usage: cran: GUniFrac

Generalized UniFrac Distances, Distance-Based Multivariate Methods and Feature-Based Univariate Methods for Microbiome Data Analysis
9 versions
Latest release: 8 months ago
5 dependent packages
1,461 downloads last month

View more package details: https://packages.ecosyste.ms/registries/cran.r-project.org/packages/GUniFrac

Dependent Repos 17

rseng/rsepedia-analysis

Exploring clustering of research software encyclopedia entries

* _repos/github/david-barnett/microViz/DESCRIPTION

Size: 435 MB - Last synced: 10 days ago - Pushed: 10 days ago

fconstancias/DivComAnalyses

Community Analysis and visualisation using R

* DESCRIPTION

Size: 29.7 MB - Last synced: about 1 month ago - Pushed: about 2 months ago

EmoryIntegratedComputationalCore/Methods

Some of the analytical processes and tools we use to provide rigorous and actionable results to our clients.

* MicrobiomeMethods/16s/docs/LDM/DESCRIPTION

Size: 18 MB - Last synced: about 1 year ago - Pushed: over 3 years ago

wdl2459/ConQuR

Batch effects removal for microbiome data via conditional quantile regression

* DESCRIPTION

Size: 1.95 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago

cran/GrammR

:exclamation: This is a read-only mirror of the CRAN R package repository. GrammR — Graphical Representation and Modeling of Metagenomic Reads. Homepage: https://www.r-project.org, http://www.stat.osu.edu/~statgen/SOFTWARE/GrammR/

* DESCRIPTION

Size: 57.6 KB - Last synced: 7 months ago - Pushed: about 8 years ago

YJ7599/MiPairGit

Comprehensive comparative analysis for paired microbiome data

* LDM/DESCRIPTION

Size: 3.66 MB - Last synced: 12 months ago - Pushed: 12 months ago

wejlab/animalcules

R shiny app for interactive microbiome analysis

* DESCRIPTION

Size: 18.6 MB - Last synced: 4 days ago - Pushed: 4 months ago

ChiLiubio/microeco

An R package for data analysis in microbial community ecology

* DESCRIPTION

Size: 34.1 MB - Last synced: 2 days ago - Pushed: 2 days ago

Hide-Fun/teco

* DESCRIPTION

Size: 145 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago

hpetren/chemodiv

R package for analysing phytochemical data

* DESCRIPTION

Size: 375 KB - Last synced: 5 days ago - Pushed: 9 months ago

david-barnett/microViz

R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.

* DESCRIPTION

Size: 399 MB - Last synced: about 2 months ago - Pushed: about 2 months ago

cran/chemodiv

:exclamation: This is a read-only mirror of the CRAN R package repository. chemodiv — Analysing Chemodiversity of Phytochemical Data. Homepage: https://github.com/hpetren/chemodiv Report bugs for this package: https://github.com/hpetren/chemodiv/issues

* DESCRIPTION

Size: 1010 KB - Last synced: 9 months ago - Pushed: 9 months ago

fangly/phyloseq Fork of joey711/phyloseq

phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:

>= 1.0 DESCRIPTION

Size: 70 MB - Last synced: about 1 month ago - Pushed: over 8 years ago

aplantin/MiRKATS

* DESCRIPTION

Size: 940 KB - Last synced: 7 months ago - Pushed: over 3 years ago

kstagaman/microbData

Data Wrangling for Microbiome Analyses

* DESCRIPTION

Size: 883 KB - Last synced: 2 months ago - Pushed: 2 months ago

teyden/asthma-research

* packrat/lib/x86_64-apple-darwin18.2.0/3.5.2/MiRKAT/DESCRIPTION
* packrat/lib/x86_64-apple-darwin18.2.0/3.5.2/MiRKC/DESCRIPTION

Size: 572 MB - Last synced: 9 months ago - Pushed: about 4 years ago

kstagaman/phyloseqCompanion

Provides additional functions to work with phyloseq objects

* DESCRIPTION

Size: 11.7 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

YushuShi/MicrobiomeCluster

This package includes basic functions calculating OTU and CROTU abundance. It also provides distance and levels of tree nodes and tips from its root. Researchers can use MicrobiomeCluster package to manipulate an existing tree by trimming or growing branches, or check if a Beta metric is suitable for clustering a dataset.

* DESCRIPTION

Size: 3 MB - Last synced: 12 months ago - Pushed: over 1 year ago

YushuShi/looPA 📦

* DESCRIPTION

Size: 785 KB - Last synced: 12 months ago - Pushed: about 4 years ago

bioc/benchdamic

This is a read-only mirror of the git repos at https://bioconductor.org

* DESCRIPTION

Size: 5.47 MB - Last synced: 24 days ago - Pushed: 24 days ago

JunqiangZheng/microeco Fork of ChiLiubio/microeco

An R package for data analysis in microbial community ecology

* DESCRIPTION

Size: 18.3 MB - Last synced: 10 months ago - Pushed: almost 4 years ago

cran/mecoturn

:exclamation: This is a read-only mirror of the CRAN R package repository. mecoturn — Decipher Microbial Turnover along a Gradient. Homepage: https://github.com/ChiLiubio/mecoturn