RANN | cran | Package Usage | Ecosyste.ms: Repos

franzbischoff/recipes Fork of tidymodels/recipes

Pipeable steps for feature engineering and data preprocessing to prepare for modeling

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Size: 60.3 MB - Last synced: 14 days ago - Pushed: 16 days ago

tidymodels/themis

Extra recipes steps for dealing with unbalanced data

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Size: 69.5 MB - Last synced: 5 days ago - Pushed: 3 months ago

supatt-lab/SingCellaR

an integrative analysis tool for analysing large-scale single cell RNA-sequencing data

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Size: 6.25 MB - Last synced: 7 months ago - Pushed: 10 months ago

raevskymichail/epi-impute

Epi-Impute: single-cell RNA-seq imputation via integration with single-cell ATAC-seq data

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Size: 56.3 MB - Last synced: 7 months ago - Pushed: 10 months ago

broadinstitute/infercnv

Inferring CNV from Single-Cell RNA-Seq

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Size: 22.6 MB - Last synced: 2 months ago - Pushed: 3 months ago

cole-trapnell-lab/monocle-release

>= 2.5 DESCRIPTION

Size: 207 MB - Last synced: 2 months ago - Pushed: almost 2 years ago

welch-lab/liger

R package for integrating and analyzing multiple single-cell datasets

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Size: 193 MB - Last synced: 7 days ago - Pushed: about 2 months ago

YosefLab/VISION

Signature Analysis and Visualization for Single-Cell RNA-seq

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Size: 94.6 MB - Last synced: 11 days ago - Pushed: 3 months ago

neelsoumya/dsSurvival

Survival functions for DataSHIELD. Package for building survival models, Cox proportional hazards models and Cox regression models in DataSHIELD.

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Size: 4.25 MB - Last synced: 7 months ago - Pushed: 11 months ago

prabhakarlab/DUBStepR

Correlation-Based Feature Selection for Single-Cell RNA Sequencing Data

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Size: 10.7 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago

dmattek/ARCOS

An R package to detect collective spatio-temporal phenomena

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Size: 50.8 MB - Last synced: 2 days ago - Pushed: 3 months ago

lima1/sttkit

Pipeline for SpatialTranscriptomics and 10X Visium data

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Size: 541 KB - Last synced: 13 days ago - Pushed: 13 days ago

topepo/caret

caret (Classification And Regression Training) R package that contains misc functions for training and plotting classification and regression models

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Size: 378 MB - Last synced: 4 days ago - Pushed: 15 days ago

JEFworks/MUDAN

Multi-sample Unified Discriminant ANalysis

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Size: 60.1 MB - Last synced: 7 months ago - Pushed: about 1 year ago

YangChencyy/Gaussian-process-modeling-for-OOD-Detection

This repo contains self-learning codes for detecting out of distribution data using Gaussian Process Method

* NNGP-master/NNGP-R/spNNGP/DESCRIPTION

Size: 35.1 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

sankaranlab/SCAVENGE

SCAVENGE is a method to optimize the inference of functional and genetic associations to specific cells at single-cell resolution.

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Size: 38.5 MB - Last synced: about 1 year ago - Pushed: about 1 year ago

r-forge/spdep

Read-only mirror of "spdep" from r-forge SVN.

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Size: 11.3 MB - Last synced: 10 months ago - Pushed: over 2 years ago

DOI-USGS/nhdplusTools

See official repository at: https://code.usgs.gov/water/nhdplusTools

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Size: 320 MB - Last synced: 3 days ago - Pushed: 3 days ago

benjiec/xcms

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Size: 316 KB - Last synced: about 1 month ago - Pushed: almost 8 years ago

James-Thorson/spatial_DFA

Spatial dynamic factor analysis, for estimating spatiotemporal density dependence in community dynamics

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Size: 5.78 MB - Last synced: 2 months ago - Pushed: almost 4 years ago

:exclamation: This is a read-only mirror of the CRAN R package repository. nabor — Wraps 'libnabo', a Fast K Nearest Neighbour Library for Low Dimensions. Homepage: https://github.com/jefferis/nabor https://github.com/ethz-asl/libnabo Report bugs for this package: https://github.com/jefferis/nabor/issues

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Size: 56.6 KB - Last synced: 9 months ago - Pushed: almost 6 years ago

hhwagner1/LandGenCourse

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Size: 152 MB - Last synced: 3 months ago - Pushed: 3 months ago

pfh/langevitour

Langevin dynamics based tours of data, in Javascript with R wrapper.

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Size: 2.2 MB - Last synced: 15 days ago - Pushed: 3 months ago

kuijjerlab/SCORPION

Single Cell Oriented Reconstruction of PANDA-based Individually Optimized Networks

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Size: 93.1 MB - Last synced: 3 days ago - Pushed: 3 days ago

m-Py/anticlust

Subset partitioning via anticlustering

>= 2.6.0 DESCRIPTION

Size: 4.39 MB - Last synced: 15 days ago - Pushed: 15 days ago

YMa-lab/CARD

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Size: 41.2 MB - Last synced: 3 months ago - Pushed: 3 months ago

doserjef/spOccupancy

Single-species, Multi-species, and Integrated Spatial Occupancy Models

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Size: 121 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

CamaraLab/RayleighSelection

An R package for feature selection in topological spaces.

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Size: 326 MB - Last synced: 7 months ago - Pushed: almost 3 years ago

cran/ptools

:exclamation: This is a read-only mirror of the CRAN R package repository. ptools — Tools for Poisson Data. Homepage: https://github.com/apwheele/ptools

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Size: 5.01 MB - Last synced: 9 months ago - Pushed: over 1 year ago

bozercavdar/LESS_R

R implementation of LESS

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Size: 13.5 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

kisungyou/Rdimtools

Dimension Reduction and Estimation Methods

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Size: 90.4 MB - Last synced: 7 months ago - Pushed: over 1 year ago

rezakj/iCellR

Single (i) Cell R package (iCellR) is an interactive R package to work with high-throughput single cell sequencing technologies (i.e scRNA-seq, scVDJ-seq, scATAC-seq, CITE-Seq and Spatial Transcriptomics (ST)).

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Size: 68.2 MB - Last synced: 26 days ago - Pushed: about 2 months ago

taurielcc/StatComp20036

20036's final project for 'Statistical Computing' course.

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Size: 938 KB - Last synced: 10 months ago - Pushed: over 3 years ago

JinmiaoChenLab/cytofkit

cytofkit: an integrated flow/mass cytometry data analysis pipeline

>= 2.5 DESCRIPTION

Size: 11.7 MB - Last synced: 3 months ago - Pushed: over 3 years ago

CamaraLab/AdjacencyScore

R package assessing co-localization of features in a graph

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Size: 29.3 KB - Last synced: about 1 year ago - Pushed: about 3 years ago

kkalininMI/EFToolkit

This package helps to implement election forensics analysis using various methods and estimators.

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Size: 5.89 MB - Last synced: 11 months ago - Pushed: over 3 years ago

butcer0/SequenceOne

Transcriptional Factor consensus sequence tool interfacing JASPAR chip-seq data

* R-Portable-Mac/library/caret/DESCRIPTION
* R-Portable-Mac/library/dimRed/DESCRIPTION

Size: 356 MB - Last synced: 7 months ago - Pushed: over 1 year ago

SammedMandape/mitomix_UI

R shiny interface for MMDIT project

* R-Portable-Mac/library/caret/DESCRIPTION

Size: 316 MB - Last synced: 7 months ago - Pushed: over 1 year ago

ShuklaLab/ATRPred

ATRPred: Anti-tumour necrosis factor Treatment Response Predictor

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Size: 486 KB - Last synced: 8 months ago - Pushed: 9 months ago

cran/LICORS

:exclamation: This is a read-only mirror of the CRAN R package repository. LICORS — Light Cone Reconstruction of States - Predictive State<U+000a>Estimation From Spatio-Temporal Data. Homepage: http://www.stat.cmu.edu/~gmg

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Size: 434 KB - Last synced: 9 months ago - Pushed: over 1 year ago

r-pkg-team/r-cran-dimred

r-cran-dimred packaging

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Last synced: over 1 year ago

sdownin/sequencer

(Under Development) User-Friendly Sequence Analysis App built on R

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Size: 477 MB - Last synced: 2 months ago - Pushed: 10 months ago

r-pkg-team/r-cran-recipes

r-cran-recipes packaging

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Last synced: 11 months ago

r-pkg-team/r-cran-caret

r-cran-caret packaging

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Last synced: 12 months ago

r-pkg-team/r-bioc-monocle

Clustering, differential expression, and trajectory analysis for

>= 2.5 DESCRIPTION

Last synced: over 1 year ago

cran/caret

:exclamation: This is a read-only mirror of the CRAN R package repository. caret — Classification and Regression Training. Homepage: https://github.com/topepo/caret/ Report bugs for this package: https://github.com/topepo/caret/issues

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Size: 71.3 MB - Last synced: 7 months ago - Pushed: about 1 year ago

rcannood/SCORPIUS

Linear trajectory inference for single-cell RNA-seq

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Size: 72.4 MB - Last synced: 27 days ago - Pushed: about 1 month ago

bwtian/rLibWin

R library for Windows

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Size: 619 MB - Last synced: 21 days ago - Pushed: almost 9 years ago

RfastOfficial/Rfast2

A collection of Rfast2 functions for data analysis. Note 1: The vast majority of the functions accept matrices only, not data.frames. Note 2: Do not have matrices or vectors with have missing data (i.e NAs). We do no check about them and C++ internally transforms them into zeros (0), so you may get wrong results. Note 3: In general, make sure you give the correct input, in order to get the correct output. We do no checks and this is one of the many reasons we are fast.

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Size: 700 KB - Last synced: 12 days ago - Pushed: 12 days ago

dynverse/dyndimred

Dimred methods for TI

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Size: 484 KB - Last synced: 6 months ago - Pushed: about 3 years ago

sevvandi/lookout

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Size: 1.45 MB - Last synced: 22 days ago - Pushed: 22 days ago

kwilliams83/ldbod

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Size: 182 KB - Last synced: 6 months ago - Pushed: almost 7 years ago

Vivianstats/scINSIGHT

Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data

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Size: 4.8 MB - Last synced: 4 months ago - Pushed: almost 2 years ago

kisungyou/maotai

Tools for Matrix Algebra, Optimization and Inference

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Size: 95.9 MB - Last synced: 4 days ago - Pushed: about 1 year ago

zhukovyuri/SUNGEO

SUNGEO Geoprocessing Library

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Size: 54.5 MB - Last synced: 9 days ago - Pushed: 10 days ago

ArkajyotiSaha/BRISC

Bootstrap for Rapid Inference on Spatial Covariances

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Size: 520 KB - Last synced: 6 months ago - Pushed: about 3 years ago

zhuye88/isokernel

R package for Isolation Kernel.

>= 2.6.1 DESCRIPTION

Size: 68.4 KB - Last synced: 4 days ago - Pushed: over 2 years ago

marcellodo/StatMatch

An r package for Statistical Matching (aka Data fusion)

* StatMatch_1.3.0/DESCRIPTION
* StatMatch_1.4.0/DESCRIPTION
* StatMatch_1.4.1/DESCRIPTION

Size: 3.3 MB - Last synced: 11 days ago - Pushed: about 2 years ago

paulnorthrop/donut

Nearest Neighbour Search with Variables on a Torus

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Size: 1.12 MB - Last synced: 6 months ago - Pushed: 9 months ago

shaunpwilkinson/insect

Informatic Sequence Classification Trees

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Size: 42.6 MB - Last synced: 8 days ago - Pushed: almost 3 years ago

ArkajyotiSaha/BRISC-extensions

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Size: 152 KB - Last synced: about 1 year ago - Pushed: over 2 years ago

James-Thorson/spatial_condition_factor

Spatial analysis tools for estimating spatial and spatiotemporal variation in individual condition

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Size: 883 KB - Last synced: 2 months ago - Pushed: over 9 years ago

jeffreyevans/spatialEco

R package for spatial analysis and modelling of ecological systems

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Size: 15.6 MB - Last synced: about 1 month ago - Pushed: about 2 months ago

bicciatolab/popsicleR

popsicleR, a flexible R package aimed at providing most of the necessary quality controls and preliminary information for complete and detailed analysis of single cell RNA-seq data.

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Size: 48.3 MB - Last synced: 22 days ago - Pushed: 23 days ago

rnabioco/scbp

utility boilerplate single cell functions

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Size: 820 KB - Last synced: 16 days ago - Pushed: 11 months ago

r-pkg-team/r-cran-seurat

Tools for Single Cell Genomics

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Last synced: over 1 year ago

r-forge/caret

Read-only mirror of "caret" from r-forge SVN.

* V6/caret/DESCRIPTION
* archive/caret/DESCRIPTION
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Size: 83.6 MB - Last synced: 10 months ago - Pushed: over 2 years ago

apwheele/ptools

R package with helper functions for Poisson data

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Size: 13 MB - Last synced: 6 months ago - Pushed: 7 months ago

sneumann/xcms-presvnbridge

Tempoary git repo for disruptive changes not yes in XCMS

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Size: 2.65 MB - Last synced: about 1 year ago - Pushed: about 11 years ago

r-pkg-team/r-cran-unbalanced

GNU R racing for unbalanced methods selection

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Last synced: about 1 year ago

bbuchsbaum/fmrireg

R package for regression-based analysis of fMRI data

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Size: 60.6 MB - Last synced: about 1 year ago - Pushed: about 1 year ago

BenaroyaResearch/briDiscovr

Distribution analysis across clusters of a parent population overlaid with a rare subpopulation (DISCOV-R)

>= 2.5 DESCRIPTION

Size: 131 KB - Last synced: 2 months ago - Pushed: 2 months ago

immunogenomics/LISI

Methods to compute Local Inverse Simpson's Index (LISI)

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Size: 50.8 KB - Last synced: 7 months ago - Pushed: over 2 years ago

peekxc/Mapper 📦

R package for computing the Mapper construction from Topological Data Analysis

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Size: 64.6 MB - Last synced: about 1 month ago - Pushed: about 2 years ago

r3fang/SnapATAC

Analysis Pipeline for Single Cell ATAC-seq

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Size: 170 MB - Last synced: 3 months ago - Pushed: about 1 year ago

r-pkg-team/r-cran-themis

GNU R extra recipes steps for dealing with unbalanced data

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Last synced: 11 months ago

TrigosTeam/SPIAT

>= 2.6.1 DESCRIPTION

Size: 30.7 MB - Last synced: 16 days ago - Pushed: 2 months ago

ck37/varimpact

Variable importance through targeted causal inference, with Alan Hubbard

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Size: 618 KB - Last synced: 4 days ago - Pushed: about 1 year ago

ck37/ck37r

R functions for project setup, data cleaning, machine learning, SuperLearner, parallelization, and targeted learning.

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Size: 1.13 MB - Last synced: 4 days ago - Pushed: about 1 year ago

immunogenomics/symphony

Efficient and precise single-cell reference atlas mapping with Symphony

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Size: 124 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

cran/StatMatch

:exclamation: This is a read-only mirror of the CRAN R package repository. StatMatch — Statistical Matching or Data Fusion. Homepage: https://github.com/marcellodo/StatMatch, https://github.com/marcellodo/StatMatch/tree/master/Tutorials_Vignette_OtherDocs

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Size: 2.2 MB - Last synced: 11 days ago - Pushed: 11 days ago

cran/fscaret

:exclamation: This is a read-only mirror of the CRAN R package repository. fscaret — Automated Feature Selection from 'caret'

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Size: 1.07 MB - Last synced: 7 months ago - Pushed: about 6 years ago

selcukorkmaz/MLSeq

Machine Learning Interface to RNA-Seq Data

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Size: 505 KB - Last synced: 8 months ago - Pushed: about 10 years ago

umr-amap/AMAPVox

LiDAR data voxelisation package

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Size: 46.5 MB - Last synced: 2 months ago - Pushed: 2 months ago

AngusWright/LAMBDAR

LAMBDAR: Lambda Adaptive Multi-Band Deblending Algorithm in R

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Size: 61.3 MB - Last synced: 10 months ago - Pushed: about 2 years ago

cran/spatialEco

:exclamation: This is a read-only mirror of the CRAN R package repository. spatialEco — Spatial Analysis and Modelling Utilities. Homepage: https://github.com/jeffreyevans/spatialEco, https://jeffreyevans.github.io/spatialEco/ Report bugs for this package: https://github.com/jeffreyevans/spatialEco/issues