ggrepel | cran | Package Usage | Ecosyste.ms: Repos

tidytranscriptomics-workshops/ismb2021_tidytranscriptomics

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Size: 29.5 MB - Last synced: 10 months ago - Pushed: over 2 years ago

sportsdataverse/hoopR

An R package to quickly obtain clean and tidy men's basketball play by play data.

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Size: 39.5 MB - Last synced: 27 days ago - Pushed: 4 months ago

angelolab/FlowSOM Fork of SofieVG/FlowSOM

Using self-organizing maps for visualization and interpretation of cytometry data

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Size: 22.5 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago

hemstrow/snpR

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Size: 14.8 MB - Last synced: 13 days ago - Pushed: 13 days ago

nlmixr2/rxode2

rxode2

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Size: 433 MB - Last synced: 24 days ago - Pushed: 24 days ago

cnio-bu/beyondcell

Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq and Spatial Transcriptomics data.

>= 0.8.2 DESCRIPTION

Size: 143 MB - Last synced: 2 months ago - Pushed: 2 months ago

CDCgov/SaviR

The purpose of SaviR is to collect the functions needed to access and prepare various COVID data sources.

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Size: 236 MB - Last synced: 2 months ago - Pushed: 2 months ago

plotly/plotly.r-docs

The documentation for Ploty's R graphing library.

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Size: 27.5 MB - Last synced: 5 days ago - Pushed: 8 months ago

jasp-stats/jaspRegression

The Regression Module

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Size: 13 MB - Last synced: 27 days ago - Pushed: 27 days ago

sujit-sahu/bmstdr

This is the repository for the R package bmstdr.

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Size: 36.5 MB - Last synced: 5 months ago - Pushed: 5 months ago

mjskay/tidybayes

Bayesian analysis + tidy data + geoms (R package)

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Size: 229 MB - Last synced: 22 days ago - Pushed: 23 days ago

YunZhang2014/test

My book test code

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Size: 863 MB - Last synced: about 1 year ago - Pushed: about 1 year ago

wch/rgcookbook

R Graphics Cookbook

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Size: 2.89 MB - Last synced: 7 months ago - Pushed: about 1 year ago

KatrionaGoldmann/volcano3D

An R package to plot interactive three-way differential expression analysis

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Size: 219 MB - Last synced: 14 days ago - Pushed: 9 months ago

lucavd/r4ds_ita_1st_ed Fork of hadley/r4ds

R for data science - edizione italiana

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Size: 117 MB - Last synced: 9 months ago - Pushed: 9 months ago

connorhknight/IBRAP

single-cell RNA-sequencing integrative, benchmarking tool.

>= 0.9.1 DESCRIPTION

Size: 327 MB - Last synced: about 1 year ago - Pushed: about 1 year ago

jamovi/jmv

jamovi for R

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Size: 3.15 MB - Last synced: 6 days ago - Pushed: 13 days ago

davidgohel/ggiraph

make 'ggplot' graphics interactive

>= 0.9.1 DESCRIPTION

Size: 33.4 MB - Last synced: 3 minutes ago - Pushed: about 1 hour ago

jasp-stats/jaspQualityControl

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Size: 14 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

GangLiLab/genekitr

🧬 Gene analysis toolkit based on R

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Size: 83.1 MB - Last synced: 9 months ago - Pushed: 9 months ago

The Audit module is developed to facilitate statistical auditing in both Bayesian and classical manifestations. The main feature is a workflow that helps guide auditors through the sampling process. Additionally, there are stand-alone analyses for planning, selecting, and evaluating a sample. The module is based on the R package jfa.

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Size: 10.2 MB - Last synced: 6 days ago - Pushed: 6 days ago

YuLab-SMU/MicrobiotaProcess

:microbe: A comprehensive R package for deep mining microbiome

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Size: 6.86 MB - Last synced: 1 day ago - Pushed: 3 days ago

niekverw/ukbpheno

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Size: 74 MB - Last synced: about 2 months ago - Pushed: 7 months ago

ropensci/rnaturalearth

An R package to hold and facilitate interaction with natural earth map data :earth_africa:

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Size: 122 MB - Last synced: 5 days ago - Pushed: 3 months ago

ModelOriented/shapviz

R package for SHAP plots

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Size: 27.7 MB - Last synced: 9 days ago - Pushed: 3 months ago

RajLabMSSM/echofinemap

echoverse module: Statistical and functional fine-mapping functions.

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Size: 1.01 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

spsanderson/healthyR.ai

healthyR.ai - AI package for the healthyverse

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Size: 77.7 MB - Last synced: 6 days ago - Pushed: 3 months ago

tidymodels/parsnip

A tidy unified interface to models

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Size: 27.8 MB - Last synced: 1 day ago - Pushed: 2 days ago

raevskymichail/epi-impute

Epi-Impute: single-cell RNA-seq imputation via integration with single-cell ATAC-seq data

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Size: 56.3 MB - Last synced: 7 months ago - Pushed: 10 months ago

mlr-org/mlr3website

The mlr3 quarto website and accomanying R package.

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Size: 328 MB - Last synced: 16 days ago - Pushed: about 1 month ago

r4ds/bookclub-ggplot2

ggplot2 Book Club

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Size: 143 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

stemangiola/sccomp

Testing differences in cell type proportions from single-cell data.

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Size: 88.2 MB - Last synced: 8 days ago - Pushed: 8 days ago

Close-your-eyes/scexpr

tools for single cell rna seq analysis

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Size: 564 KB - Last synced: about 1 month ago - Pushed: about 1 month ago

enblacar/SCpubr

Generate high quality, publication ready visualizations for single cell transcriptomics data.

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Size: 87.6 MB - Last synced: 10 days ago - Pushed: 3 months ago

drieslab/Giotto

Spatial omics analysis toolbox

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Size: 1.62 GB - Last synced: about 19 hours ago - Pushed: 2 days ago

leifeld/dna

Discourse Network Analyzer (DNA)

>= 0.7.0 rDNA2/DESCRIPTION

Size: 158 MB - Last synced: 2 months ago - Pushed: 3 months ago

ataudt/aneufinder

Find CNVs in single cell sequencing data.

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Size: 35.9 MB - Last synced: 5 days ago - Pushed: about 1 year ago

YuLab-SMU/enrichplot

Visualization of Functional Enrichment Result

>= 0.9.0 DESCRIPTION

Size: 658 KB - Last synced: 1 day ago - Pushed: 2 days ago

strengejacke/sjPlot

sjPlot - Data Visualization for Statistics in Social Science

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Size: 327 MB - Last synced: 2 days ago - Pushed: 3 days ago

esnapd/DegeneratePrimerTools 📦

Utilities for Creating and Validating Degenerate primers

>= 0.6.5 DESCRIPTION

Size: 2.05 MB - Last synced: about 1 year ago - Pushed: over 5 years ago

OpenIntroStat/ims

📚 Introduction to Modern Statistics - A college-level open-source textbook with a modern approach highlighting multivariable relationships and simulation-based inference. For v1, see https://openintro-ims.netlify.app.

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Size: 421 MB - Last synced: about 7 hours ago - Pushed: 1 day ago

GreenleafLab/ArchR

ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)

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Size: 145 MB - Last synced: 3 months ago - Pushed: 3 months ago

DmitryVel/ALISTRA

Analysis of LIneage-Specific TRAjectories

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Size: 462 KB - Last synced: 9 months ago - Pushed: 9 months ago

kevinblighe/PCAtools

PCAtools: everything Principal Components Analysis

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Size: 27.5 MB - Last synced: 10 days ago - Pushed: 7 months ago

dingruofan/xQTLbiolinks

xQTLbiolinks: a comprehensive and scalable tool for integrative analysis of molecular QTLs

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Size: 58.5 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

DeclareDesign/book

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Size: 19.1 MB - Last synced: about 2 months ago - Pushed: 3 months ago

showteeth/ggpie

ggpie - A ggplot2 extension to create pie, donut and rose pie plot

* DESCRIPTION

Size: 31.1 MB - Last synced: 26 days ago - Pushed: 7 months ago

insightsengineering/hermes

Preprocessing, analyzing, and reporting of RNA-seq data

>= 0.9 DESCRIPTION

Size: 45.2 MB - Last synced: 16 days ago - Pushed: 17 days ago

nuno-agostinho/cTRAP

Identification of candidate causal perturbations from differential gene expression data

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Size: 483 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

Syksy/curatedPCaData

Curated Prostate Cancer Data R-package

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Size: 4.53 MB - Last synced: 7 months ago - Pushed: 7 months ago

hadley/ggplot2-book

ggplot2: elegant graphics for data analysis

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Size: 49.2 MB - Last synced: 2 days ago - Pushed: 21 days ago

kassambara/ggpubr

'ggplot2' Based Publication Ready Plots

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Size: 83.7 MB - Last synced: about 2 months ago - Pushed: 9 months ago

SwissTPH/timci

Tools for Integrated Management of Childhood Illness

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Size: 16.7 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

matsim-vsp/matsim-r

R library for interfacing with MATSim agent-based microsimulation model

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Size: 6.91 MB - Last synced: 24 days ago - Pushed: about 2 months ago

lazappi/clustree

Visualise Clusterings at Different Resolutions

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Size: 36.9 MB - Last synced: 7 days ago - Pushed: 6 months ago

Olink-Proteomics/OlinkRPackage

Olink R package: A collection of functions to facilitate analysis of proteomic data from Olink. The goal of this package is to help users extract biological insights from proteomic data run on the Olink platform.

* OlinkAnalyze/DESCRIPTION

Size: 51.4 MB - Last synced: 7 months ago - Pushed: 7 months ago

MalteThodberg/tidyGenomeBrowser

Easy genome browser figures using R / Bioconductor

>= 0.9.1 DESCRIPTION

Size: 1.42 MB - Last synced: 3 months ago - Pushed: 3 months ago

rempsyc/rempsyc

Package of convenience functions to make your workflow faster and easier. Easily customizable plots (via ggplot2), nice APA tables exportable to Word (via flextable), easily run statistical tests or check assumptions, and automatize various other tasks.

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Size: 617 MB - Last synced: 9 days ago - Pushed: 9 days ago

SticsRPacks/CroPlotR

A package to analyze crop models outputs

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Size: 11.3 MB - Last synced: 10 days ago - Pushed: 10 days ago

welch-lab/liger

R package for integrating and analyzing multiple single-cell datasets

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Size: 193 MB - Last synced: 29 days ago - Pushed: about 1 month ago

SofieVG/FlowSOM

Using self-organizing maps for visualization and interpretation of cytometry data

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Size: 22 MB - Last synced: 5 months ago - Pushed: 5 months ago

isglobal-brge/dsOmicsClient

dsOmic client site base functions

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Size: 27.8 MB - Last synced: 7 months ago - Pushed: about 1 year ago

cran/idm

:exclamation: This is a read-only mirror of the CRAN R package repository. idm — Incremental Decomposition Methods

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Size: 416 KB - Last synced: 9 months ago - Pushed: almost 2 years ago

genesofeve/projectR

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Size: 26.7 MB - Last synced: 2 months ago - Pushed: 3 months ago

samuel-marsh/scCustomize

R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.

* DESCRIPTION

Size: 276 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

r-causal/ggdag

:arrow_lower_left: :arrow_lower_right: An R package for working with causal directed acyclic graphs (DAGs)

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Size: 172 MB - Last synced: 15 days ago - Pushed: about 2 months ago

pachterlab/LP_2021

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Size: 1.39 GB - Last synced: 7 days ago - Pushed: about 1 month ago

bioFAM/MOFA2

Multi-Omics Factor Analysis

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Size: 162 MB - Last synced: 7 days ago - Pushed: 4 months ago

Rkabacoff/qacReg

R package for multiple and logistic regression.

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Size: 39.6 MB - Last synced: 7 months ago - Pushed: almost 2 years ago

Vitek-Lab/MSstatsPTM

Post Translational Modification (PTM) Significance Analysis in shotgun mass spectrometry-based proteomic experiments

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Size: 21.7 MB - Last synced: 1 day ago - Pushed: 3 days ago

BillPetti/baseballr

A package written for R focused on baseball analysis. Currently in development.

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Size: 32.9 MB - Last synced: 5 days ago - Pushed: about 1 month ago

junjunlab/GseaVis

An implement R package to visualize GSEA results

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Size: 3.16 MB - Last synced: 21 days ago - Pushed: 5 months ago

RMalinverni/regioneReloaded

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Size: 6.99 MB - Last synced: 26 days ago - Pushed: 11 months ago

ShixiangWang/sigminer

🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R https://shixiangwang.github.io/sigminer/reference/index.html

* DESCRIPTION

Size: 51 MB - Last synced: about 1 month ago - Pushed: 2 months ago

nevrome/mobest.analysis.2022

Research compendium for ‘Estimating human mobility in Holocene Western Eurasia with large-scale ancient genomic data’; If you want to perform spatio-temporal similary search with the mobest R package as presented in the paper, then you can directly check the documentation here: https://nevrome.de/mobest

>= 0.9.1 DESCRIPTION

Size: 9.72 MB - Last synced: 2 months ago - Pushed: 2 months ago

spsanderson/healthyR

Hospital Data Analysis Workflow Tools

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Size: 26 MB - Last synced: 27 days ago - Pushed: 4 months ago

KasperSkytte/ampvis2

Tools for visualising microbial community amplicon data

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Size: 134 MB - Last synced: about 22 hours ago - Pushed: 1 day ago

anastasia-lucas/hudson

An R package for creating mirrored Manhattan plots

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Size: 1.73 MB - Last synced: 7 months ago - Pushed: over 1 year ago

ucagenomix/isoswitch

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Size: 3.52 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

CHKim5/LMSstat

Package for automation of statistics that are widely used in metabolomics.

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Size: 392 KB - Last synced: 7 months ago - Pushed: over 2 years ago

gdauby/bdd_plots_central_africa

Gestion d'une base de données d'inventaires forestiers en postgresql

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Size: 67.7 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

rseng/rsepedia-analysis

Exploring clustering of research software encyclopedia entries

* _repos/github/HajkD/LTRpred/DESCRIPTION
* _repos/github/IndrajeetPatil/ggstatsplot/DESCRIPTION
* _repos/github/KerryAM-R/ggVolcanoR/DESCRIPTION
>= 0.6.5 _repos/github/LabTranslationalArchitectomics/riboWaltz/DESCRIPTION
* _repos/github/RajLabMSSM/echolocatoR/DESCRIPTION
* _repos/github/ShixiangWang/sigminer/DESCRIPTION
* _repos/github/SofieVG/FlowSOM/DESCRIPTION
* _repos/github/VincentAlcazer/StatAid/DESCRIPTION
* _repos/github/david-barnett/microViz/DESCRIPTION
* _repos/github/dpseidel/stmove/DESCRIPTION
* _repos/github/jessecambon/tidygeocoder/DESCRIPTION
* _repos/github/koenderks/jaspAudit/DESCRIPTION
* _repos/github/ropensci/dataaimsr/DESCRIPTION

Size: 435 MB - Last synced: 1 day ago - Pushed: 2 days ago

MassDynamics/lfq_processing

Post-processing of MaxQuant Label Free Quantification results.

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Size: 51.9 MB - Last synced: 7 months ago - Pushed: about 1 year ago

mpeeples2008/ArchNetSci

Code repository and Bookdown project for Online Companion to Network Science in Archaeology by Tom Brughmans and Matthew A. Peeples (Cambridge Manuals in Archaeology)