permute | cran | Package Usage | Ecosyste.ms: Repos

vegandevs/vegan

R package for community ecologists: popular ordination methods, ecological null models & diversity analysis

>= 0.9 DESCRIPTION

Size: 462 MB - Last synced: about 2 hours ago - Pushed: about 3 hours ago

vanderleidebastiani/SYNCSA

R Package - SYNCSA - Analysis of functional and phylogenetic patterns in metacommunities

* DESCRIPTION

Size: 337 KB - Last synced: 7 months ago - Pushed: over 3 years ago

cran/rankdist

:exclamation: This is a read-only mirror of the CRAN R package repository. rankdist — Distance Based Ranking Models

* DESCRIPTION

Size: 72.3 KB - Last synced: 9 months ago - Pushed: almost 5 years ago

guudwu1986/rpeode

Parameter Estimation in ODE (implemented in R)

* package/DESCRIPTION

Size: 188 KB - Last synced: 5 months ago - Pushed: almost 10 years ago

cwatson/brainGraph

Graph theory analysis of brain MRI data

* DESCRIPTION

Size: 5.65 MB - Last synced: 4 months ago - Pushed: about 3 years ago

justindbk/NPC

Nonparametric Combination of Hypothesis Tests

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Size: 152 KB - Last synced: about 1 year ago - Pushed: about 9 years ago

NCEAS/codyn

Community dynamics metrics

* DESCRIPTION

Size: 1.11 MB - Last synced: 17 days ago - Pushed: almost 2 years ago

cran/pRF

:exclamation: This is a read-only mirror of the CRAN R package repository. pRF — Permutation Significance for Random Forests

* DESCRIPTION

Size: 6.84 KB - Last synced: 9 months ago - Pushed: about 8 years ago

cran/Traitspace

:exclamation: This is a read-only mirror of the CRAN R package repository. Traitspace — A Predictive Model for Trait Based Community Assembly of Plant Species

* DESCRIPTION

Size: 18.6 KB - Last synced: 9 months ago - Pushed: over 8 years ago

jmonlong/sQTLseekeR

R package to detect splicing QTLs (sQTLs)

* DESCRIPTION

Size: 815 KB - Last synced: 7 months ago - Pushed: about 3 years ago

msraredon/NICHES

Niche Interactions and Cellular Heterogeneity in Extracellular Signaling

* DESCRIPTION

Size: 91.3 MB - Last synced: 2 months ago - Pushed: 2 months ago

jaromilfrossard/permuco

R package for permutation test in linear model with nuisances variables

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Size: 4.74 MB - Last synced: 6 months ago - Pushed: almost 2 years ago

vinhtantran/monoClust

Monothetic Clustering

* DESCRIPTION

Size: 57.4 MB - Last synced: 21 days ago - Pushed: about 2 years ago

:exclamation: This is a read-only mirror of the CRAN R package repository. RAM — R for Amplicon-Sequencing-Based Microbial-Ecology. Homepage: https://cran.r-project.org/package=RAM, https://bitbucket.org/Wen_Chen/ram_releases/src/ Report bugs for this package: https://bitbucket.org/Wen_Chen/ram_releases/issues/

* DESCRIPTION

Size: 5.43 MB - Last synced: 7 months ago - Pushed: almost 6 years ago

r-pkg-team/r-cran-vegan

r-cran-vegan packaging

>= 0.9 DESCRIPTION

Last synced: over 1 year ago

GeoBosh/mixAR

An R package for time series modelling with mixture autoregressive and related models.

* DESCRIPTION

Size: 3.2 MB - Last synced: 3 days ago - Pushed: about 2 years ago

emf-creaf/indicspecies

Studying the statistical relationship between species and groups of sites

* DESCRIPTION

Size: 5.41 MB - Last synced: about 2 months ago - Pushed: 10 months ago

xinghuq/HierDpart

The repository to store HierDpart

* DESCRIPTION

Size: 291 KB - Last synced: 4 months ago - Pushed: about 1 year ago

quanteco/quanteco-tools

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Size: 223 KB - Last synced: about 1 year ago - Pushed: over 9 years ago

brge/meal

* DESCRIPTION

Size: 308 MB - Last synced: over 1 year ago

dwarton/ecostats 📦

the Eco-Stats package accompanying the text

* DESCRIPTION

Size: 47.6 MB - Last synced: 2 months ago - Pushed: 2 months ago

allenday/R-Storm

* Storm/DESCRIPTION

Size: 210 KB - Last synced: 26 days ago - Pushed: almost 9 years ago

HuaZou/MicrobiomeAnalysis

Data analysis and visualization on microbiome data

* DESCRIPTION

Size: 4.17 MB - Last synced: 1 day ago - Pushed: 1 day ago

cran/VdgRsm

:exclamation: This is a read-only mirror of the CRAN R package repository. VdgRsm — Plots of Scaled Prediction Variances for Response Surface Designs

* DESCRIPTION

Size: 184 KB - Last synced: 9 months ago - Pushed: about 9 years ago

cran/SYNCSA

:exclamation: This is a read-only mirror of the CRAN R package repository. SYNCSA — Analysis of Functional and Phylogenetic Patterns in Metacommunities

* DESCRIPTION

Size: 107 KB - Last synced: 9 months ago - Pushed: over 4 years ago

cran/bipartite

:exclamation: This is a read-only mirror of the CRAN R package repository. bipartite — Visualising Bipartite Networks and Calculating Some (Ecological) Indices. Homepage: https://github.com/biometry/bipartite

* DESCRIPTION

Size: 10.9 MB - Last synced: 5 months ago - Pushed: 5 months ago

cran/indicspecies

:exclamation: This is a read-only mirror of the CRAN R package repository. indicspecies — Relationship Between Species and Groups of Sites. Homepage: https://emf-creaf.github.io/indicspecies/

* DESCRIPTION

Size: 1.61 MB - Last synced: 7 months ago - Pushed: 10 months ago

cran/Storm

:exclamation: This is a read-only mirror of the CRAN R package repository. Storm — Write Storm Bolts in R using the Storm Multi-Language Protocol.

* DESCRIPTION

Size: 149 KB - Last synced: 9 months ago - Pushed: over 9 years ago

cran/vegan

:exclamation: This is a read-only mirror of the CRAN R package repository. vegan — Community Ecology Package. Homepage: https://github.com/vegandevs/vegan Report bugs for this package: https://github.com/vegandevs/vegan/issues

>= 0.9 DESCRIPTION

Size: 20.1 MB - Last synced: 7 months ago - Pushed: over 1 year ago

Wen_Chen/ram_releases

Releases of R packages and scripts

* RAM/DESCRIPTION
* RAM.Rcheck/RAM/DESCRIPTION

Size: 79.2 MB - Last synced: over 1 year ago

SunHan5/MiATDS

* DESCRIPTION

Size: 87.9 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago

brendankelly/micropower

power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA

* DESCRIPTION

Size: 134 KB - Last synced: about 2 months ago - Pushed: over 8 years ago

crtahlin/plotTests

Plot of medical data test results.

* DESCRIPTION

Size: 3 MB - Last synced: 11 months ago - Pushed: about 9 years ago

genomewalker/Rworkshop

R workshop focusing on accelerating vegan

>= 0.8 DESCRIPTION

Size: 1.78 MB - Last synced: 9 months ago - Pushed: almost 10 years ago

yijuanhu/LOCOM-Archive 📦

A logistic regression model for testing differential abundance in compositional microbiome data

* DESCRIPTION
* DESCRIPTION

Size: 15.9 MB - Last synced: 9 months ago - Pushed: 10 months ago

guudwu/l1ode

* r-package/DESCRIPTION

Size: 105 KB - Last synced: 9 months ago - Pushed: about 10 years ago

cran/randomizationInference

:exclamation: This is a read-only mirror of the CRAN R package repository. randomizationInference — Flexible Randomization-Based Inference

>= 0.7 DESCRIPTION

Size: 34.2 KB - Last synced: 9 months ago - Pushed: almost 2 years ago

cran/NPC

:exclamation: This is a read-only mirror of the CRAN R package repository. NPC — Nonparametric Combination of Hypothesis Tests

* DESCRIPTION

Size: 23.4 KB - Last synced: 9 months ago - Pushed: about 8 years ago

hansenlab/bsseq

Devel repository for bsseq

* DESCRIPTION

Size: 48.8 MB - Last synced: 3 days ago - Pushed: 3 days ago

rmorantte/RJavaWeb

R and Java

* RJavaManager/RPackages/STAR/DESCRIPTION
* RJavaManager/RPackages/vegan/DESCRIPTION

Size: 104 MB - Last synced: 9 months ago - Pushed: almost 9 years ago

guudwu/lode1

* r-package/DESCRIPTION

Size: 102 KB - Last synced: 9 months ago - Pushed: over 10 years ago

ZhaozhiQIAN/rankdist

The R package rankdist

* DESCRIPTION

Size: 215 KB - Last synced: 9 months ago - Pushed: over 8 years ago

cran/cwm

:exclamation: This is a read-only mirror of the CRAN R package repository. cwm — Cluster Weighted Models by EM algorithm

* DESCRIPTION

Size: 1020 KB - Last synced: 9 months ago - Pushed: about 10 years ago

borenstein-lab/mimosa2

* DESCRIPTION

Size: 189 MB - Last synced: 12 days ago - Pushed: over 2 years ago

r-pkg-team/r-cran-bipartite

GNU R visualising bipartite networks and calculating some (ecological)

* DESCRIPTION

Last synced: over 1 year ago

crtahlin/medplot

Functions for drawing graphs in R visualizing medical information.

* DESCRIPTION

Size: 5.17 MB - Last synced: 7 months ago - Pushed: over 8 years ago

Anderson-Lab/CCPredict

* DESCRIPTION

Size: 11 MB - Last synced: about 2 months ago - Pushed: over 8 years ago

cdeterman/OmicsMarkeR

automated 'omics' classification and feature selection

>= 0.7 DESCRIPTION

Size: 1.95 MB - Last synced: 7 months ago - Pushed: over 7 years ago

OxfordCMS/OCMSlooksy

Shiny app to explore and browse 16S rRNA data analyzed by OCMS

* DESCRIPTION

Size: 9.33 MB - Last synced: 7 months ago - Pushed: about 1 year ago

ybrugnara/EUSTACE

>= 0.7 break_detection/R_packages/vegan/DESCRIPTION

Size: 8.77 MB - Last synced: about 2 months ago - Pushed: over 1 year ago

tdeenes/eegR

A preliminary version of eegR: an R package to analyze EEG signals

* DESCRIPTION

Size: 34.4 MB - Last synced: 11 days ago - Pushed: about 3 years ago

guudwu/pede

* package/DESCRIPTION

Size: 109 KB - Last synced: 9 months ago - Pushed: over 10 years ago

bbolker/betararef

compute rarefied beta diversity and simulate communities (R package)

* DESCRIPTION

Size: 1.87 MB - Last synced: about 1 year ago - Pushed: over 2 years ago

r-pkg-team/r-bioc-bsseq

Bioconductor analyze, manage and store bisulfite sequencing data

* DESCRIPTION

Last synced: about 1 year ago

cran/BiodiversityR

:exclamation: This is a read-only mirror of the CRAN R package repository. BiodiversityR — Package for Community Ecology and Suitability Analysis. Homepage: http://www.worldagroforestry.org/output/tree-diversity-analysis

* DESCRIPTION

Size: 2.11 MB - Last synced: about 2 months ago - Pushed: about 2 months ago

hjanime/sQTLseekeR Fork of jmonlong/sQTLseekeR

R package to detect splicing QTLs (sQTLs)

* DESCRIPTION

Size: 674 KB - Last synced: about 1 year ago - Pushed: almost 9 years ago

cran/brainGraph

:exclamation: This is a read-only mirror of the CRAN R package repository. brainGraph — Graph Theory Analysis of Brain MRI Data. Homepage: https://github.com/cwatson/brainGraph Report bugs for this package: https://groups.google.com/forum/?hl=en#!forum/brainGraph-help

* DESCRIPTION

Size: 3.33 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

cran/codyn

:exclamation: This is a read-only mirror of the CRAN R package repository. codyn — Community Dynamics Metrics. Homepage: https://github.com/NCEAS/codyn/ Report bugs for this package: https://github.com/NCEAS/codyn/issues

* DESCRIPTION

Size: 3.04 MB - Last synced: 7 months ago - Pushed: over 3 years ago

RobBickel/R-Storm Fork of allenday/R-Storm

* Storm/DESCRIPTION

Size: 210 KB - Last synced: 8 months ago - Pushed: almost 9 years ago

isglobal-brge/MEAL

Methylation and Expression AnaLysis

* DESCRIPTION

Size: 877 KB - Last synced: 4 months ago - Pushed: about 3 years ago

lukas.novak/overall-depression-severity-and-impairment-scale-validation

This study aims to explore psychometric parameters of the Overall Depression Severity and Impairment Scale (ODSIS) in the Czech Republic.

>= 0.9 Packages/vegan/DESCRIPTION

Last synced: 11 months ago

snurk/meta-strains

* Clomial_meta/DESCRIPTION

Size: 63 MB - Last synced: 9 months ago - Pushed: almost 6 years ago

plantarum/vegan Fork of vegandevs/vegan

R package for community ecologists

>= 0.8 DESCRIPTION

Size: 8.1 MB - Last synced: 9 months ago - Pushed: over 8 years ago

FredHasselman/casnet-jmvWIN

casnet for Jamovi on WindowsOS

* build/R4.0.5-win64/brainGraph/DESCRIPTION

Size: 285 MB - Last synced: 9 months ago - Pushed: over 2 years ago

fsh1v07/vegan Fork of vegandevs/vegan

R package for community ecologists

>= 0.8 DESCRIPTION

Size: 6.56 MB - Last synced: about 1 year ago - Pushed: over 8 years ago

magronah/micropower Fork of brendankelly/micropower

power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA

* DESCRIPTION

Size: 134 KB - Last synced: about 1 year ago - Pushed: over 8 years ago

Sandy4321/OmicsMarkeR Fork of cdeterman/OmicsMarkeR

automated 'omics' classification and feature selection

>= 0.7 DESCRIPTION

Size: 2.22 MB - Last synced: about 1 year ago - Pushed: over 8 years ago

datasnakes/micropower Fork of brendankelly/micropower

power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA

* DESCRIPTION

Size: 134 KB - Last synced: about 2 months ago - Pushed: over 8 years ago

bcm-uga/TESS3_encho_sen

TESS3 is a fast and efficient program for estimating spatial population structure based on geographically constrained non-negative matrix factorization and population genetics.

* DESCRIPTION

Size: 39.2 MB - Last synced: 7 months ago - Pushed: 11 months ago

gopikori/R-Storm Fork of allenday/R-Storm

* Storm/DESCRIPTION

Size: 210 KB - Last synced: about 1 year ago - Pushed: almost 9 years ago

axrt/micropower Fork of brendankelly/micropower

power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA

* DESCRIPTION

Size: 22.5 KB - Last synced: about 1 year ago - Pushed: over 8 years ago

bbolker/micropower Fork of brendankelly/micropower

power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA

* DESCRIPTION

Size: 134 KB - Last synced: about 1 year ago - Pushed: over 8 years ago

tengmx/ComplexDiff

Differential binding estimation for protein complexes

* DESCRIPTION

Size: 2.48 MB - Last synced: 9 months ago - Pushed: almost 7 years ago

michaelfop/spaceNet

Latent space models for multivariate networks

* DESCRIPTION

Size: 104 KB - Last synced: about 1 year ago - Pushed: about 6 years ago

shearer/medplot Fork of crtahlin/medplot

Functions for drawing graphs in R visualizing medical information.

* DESCRIPTION

Size: 5.17 MB - Last synced: 9 months ago - Pushed: over 8 years ago

palc/BiodiversityR Fork of cran/BiodiversityR

:exclamation: This is a read-only mirror of the CRAN R package repository. BiodiversityR — Package for Community Ecology and Suitability Analysis. Homepage: http://www.r-project.org, http://www.worldagroforestry.org/resources/databases/tree-diversity-analysis

* DESCRIPTION

Size: 513 KB - Last synced: about 1 year ago - Pushed: over 8 years ago

vindignia/rweboflife

Packages for the analysis of ecological networks

* DESCRIPTION

Size: 395 KB - Last synced: 9 months ago - Pushed: 9 months ago

cran/monoClust

:exclamation: This is a read-only mirror of the CRAN R package repository. monoClust — Perform Monothetic Clustering with Extensions to Circular Data. Homepage: https://vinhtantran.github.io/monoClust/, https://github.com/vinhtantran/monoClust Report bugs for this package: https://github.com/vinhtantran/monoClust/issues