Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

Package Usage: cran: shinyFiles

A Server-Side File System Viewer for Shiny
16 versions
Latest release: almost 2 years ago
45 dependent packages
10,288 downloads last month

View more package details: https://packages.ecosyste.ms/registries/cran.r-project.org/packages/shinyFiles

View more repository details: https://repos.ecosyste.ms/hosts/GitHub/repositories/thomasp85%2FshinyFiles

Dependent Repos 161

vibscc/DALI
R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem
  • * DESCRIPTION

Size: 8.95 MB - Last synced: 2 months ago - Pushed: about 1 year ago

uweschmitt/enviMass
LC-HRMS trend detection workflow - R package
  • * DESCRIPTION

Size: 3.52 MB - Last synced: about 1 month ago - Pushed: about 7 years ago

miracum/dqa-dqagui
Mirror of https://gitlab.miracum.org/miracum/dqa/dqagui
  • * DESCRIPTION

Size: 660 KB - Last synced: 6 days ago - Pushed: 7 days ago

SpeckledJim2/lucidum.legacy
An R Shiny app to build and understand GBMs and GLMs
  • * DESCRIPTION

Size: 34.7 MB - Last synced: about 1 year ago - Pushed: about 1 year ago

rseng/rsepedia-analysis
Exploring clustering of research software encyclopedia entries
  • * _repos/github/YonghuiDong/RawHummus/DESCRIPTION
  • >= 0.9.0 _repos/github/ropensci/MODIStsp/DESCRIPTION

Size: 435 MB - Last synced: 8 days ago - Pushed: 9 days ago

ThierryO/rhinolophus
Extract bat sounds from wav files, calculate metrics on those sounds and try to identify the species.
  • * DESCRIPTION

Size: 1.51 MB - Last synced: 22 days ago - Pushed: over 6 years ago

mjhelf/Metaboseek
Interactive software to analyze and browse mass spectrometry data
  • * DESCRIPTION

Size: 176 MB - Last synced: 7 months ago - Pushed: 9 months ago

INESSS-QC/inesss1
Institut national d'excellence en santé et en services sociaux
  • * DESCRIPTION

Size: 341 MB - Last synced: 17 days ago - Pushed: 3 months ago

thomasp85/MSGFgui-release
Release branch of the MSGFgui package
  • >= 0.4.0 DESCRIPTION

Size: 1.41 MB - Last synced: 11 days ago - Pushed: over 9 years ago

leppott/ContDataQC
Quality control checks on continuous data. Example data is from a HOBO data logger with 30 minute intervals.
  • * DESCRIPTION

Size: 94.3 MB - Last synced: 2 months ago - Pushed: 3 months ago

ranghetti/sen2r
Find, Download and Process Sentinel-2 Data
  • * DESCRIPTION

Size: 61.1 MB - Last synced: about 1 month ago - Pushed: about 2 months ago

bnosac/cronR Fork of kevinushey/cronR
A simple R package for managing your cron jobs.
  • >= 0.6.0 DESCRIPTION

Size: 215 KB - Last synced: 9 days ago - Pushed: 5 months ago

ndcn/omicser
The NDCN omics browser app for browsing and sharing general omics data.
  • * DESCRIPTION

Size: 2.76 MB - Last synced: 10 days ago - Pushed: almost 2 years ago

beauchamplab/rave
For all RAVE info, including installation instructions, visit
  • >= 0.7.3 DESCRIPTION

Size: 42.3 MB - Last synced: 2 months ago - Pushed: 3 months ago

rte-antares-rpackage/antaresVizMedTSO
  • * DESCRIPTION

Size: 6.59 MB - Last synced: about 1 month ago - Pushed: about 2 years ago

gian-asco/test
  • * DESCRIPTION

Size: 95.3 MB - Last synced: about 1 year ago - Pushed: about 2 years ago

swarm-lab/trackR
trackR - A simple video tracking software for R
  • >= 0.9.0 DESCRIPTION

Size: 96.9 MB - Last synced: 2 months ago - Pushed: 2 months ago

AliSaei/HiCSuite
  • * DESCRIPTION

Size: 57.1 MB - Last synced: 10 months ago - Pushed: almost 2 years ago

mchizk1/ShinyFruit
An R shiny app for digital image phenotyping in small fruits
  • * DESCRIPTION

Size: 7.74 MB - Last synced: 8 months ago - Pushed: 8 months ago

alexw-gsct/NxtIRF
NxtIRF quantifies Intron Retention and Alternative Splicing from BAM files using the IRFinder engine. Features interactive visualisation including RNA-seq coverage plots normalised by condition at the splice junction level.
  • * DESCRIPTION

Size: 54.4 MB - Last synced: about 1 year ago - Pushed: about 3 years ago

romanhaa/cerebroApp
R package containing the Cerebro application.
  • >= 0.8.0 DESCRIPTION

Size: 22.4 MB - Last synced: 7 months ago - Pushed: over 2 years ago

ranghetti/guinterp
A Shiny GUI for Spatial Interpolation
  • * DESCRIPTION

Size: 932 KB - Last synced: about 2 months ago - Pushed: about 2 months ago

gregorbj/FSDM
Fuzzy Systems Dynamics Model
  • * DESCRIPTION

Size: 3.56 MB - Last synced: about 1 year ago - Pushed: about 3 years ago

ropensci/MODIStsp
An "R" package for automatic download and preprocessing of MODIS Land Products Time Series
  • >= 0.9.0 DESCRIPTION

Size: 180 MB - Last synced: 1 day ago - Pushed: 6 days ago

huanglu2018/diyabcGUI
  • * DESCRIPTION

Size: 33.6 MB - Last synced: 2 months ago - Pushed: almost 2 years ago

wyguo/ThreeDRNAseq
A pipeline for differential expression and differential alternative splicing analysis
  • * DESCRIPTION

Size: 185 MB - Last synced: 27 days ago - Pushed: 27 days ago

calote/addinsOutline
'RStudio' Addins for Show Outline of a R Markdown/'LaTeX' Project
  • >= 0.7.2 DESCRIPTION

Size: 286 KB - Last synced: 1 day ago - Pushed: almost 2 years ago

JinmiaoChenLab/cytofkit
cytofkit: an integrated flow/mass cytometry data analysis pipeline
  • * DESCRIPTION

Size: 11.7 MB - Last synced: 3 months ago - Pushed: over 3 years ago

jgodet/GmrcShinyStats
GMRC Shiny Stats permet de faire facilement des analyses statistiques sans connaissance en codage.
  • * DESCRIPTION

Size: 4.03 MB - Last synced: about 1 year ago - Pushed: over 3 years ago

scharywe/ProteinMicroarrayApp
  • * DESCRIPTION

Size: 241 KB - Last synced: 11 months ago - Pushed: over 3 years ago

VCCRI/Ularcirc
An R-shiny app that provides backsplice and canonical splicing analysis for both circular RNA (circRNA) and parental transcripts
  • * DESCRIPTION

Size: 54.5 MB - Last synced: about 2 months ago - Pushed: about 2 years ago

zhenkewu/baker
👩‍🍳 🥧 Bayesian Analysis Kit for Etiology Research via Nested Partially Latent Class Models
  • >= 0.6 DESCRIPTION

Size: 146 MB - Last synced: 17 days ago - Pushed: 18 days ago

laperez/Clustering
Execution of Multiple Clustering Algorithm
  • * DESCRIPTION

Size: 14.4 MB - Last synced: 11 days ago - Pushed: about 1 month ago

joannawolthuis/MetaboShiny
Repository for MetaboShiny, a novel R and RShiny based metabolomics data analysis package.
  • * DESCRIPTION

Size: 63.4 MB - Last synced: 5 months ago - Pushed: 5 months ago

rsqliteadmin/rsqliteadmin
  • * DESCRIPTION

Size: 307 KB - Last synced: 7 months ago - Pushed: over 1 year ago

harphub/harpVis
Visualisation functions for harp.
  • * DESCRIPTION

Size: 11.5 MB - Last synced: 2 months ago - Pushed: 2 months ago

mathiaskalxdorf/IceR
Quantitative proteomics workflow
  • * DESCRIPTION

Size: 4.24 MB - Last synced: 7 months ago - Pushed: over 1 year ago

ncats/IntLIM
  • * DESCRIPTION

Size: 51 MB - Last synced: about 1 month ago - Pushed: about 1 year ago

diyabc/diyabcGUI
User interface to DIYABC/AbcRanger
  • * R-pkg/DESCRIPTION

Size: 62.9 MB - Last synced: about 1 year ago - Pushed: about 2 years ago

bergsmat/tablet
Tabulate Descriptive Statistics in Multiple Formats
  • * DESCRIPTION

Size: 5.14 MB - Last synced: 29 days ago - Pushed: 29 days ago

bmsasilva/soundClass
  • * DESCRIPTION

Size: 39.7 MB - Last synced: 6 months ago - Pushed: over 1 year ago

fpaskali/LFApp
The repository includes the development version of R package LFApp
  • * DESCRIPTION

Size: 14 MB - Last synced: 5 months ago - Pushed: 7 months ago

the-Hull/datacleanr
Interactive and Reproducible Data Cleaning
  • >= 0.8.0 DESCRIPTION

Size: 24.1 MB - Last synced: 3 days ago - Pushed: almost 2 years ago

strand-tech/strand
strand: A framework for investment strategy simulation
  • * DESCRIPTION

Size: 11.2 MB - Last synced: 6 months ago - Pushed: almost 3 years ago

stla/findInFiles
Find a pattern in some files.
  • * DESCRIPTION

Size: 2.04 MB - Last synced: 23 days ago - Pushed: 25 days ago

bnasr/xROI
Delineate region of interest and extract time-series data from digital repeat photography images
  • * DESCRIPTION

Size: 50.6 MB - Last synced: 7 months ago - Pushed: almost 3 years ago

Abson-dev/sdmApp
species distribution models application
  • >= 0.7.0 DESCRIPTION

Size: 10.1 MB - Last synced: 6 months ago - Pushed: almost 3 years ago

sylvainschmitt/SSDM
Stacked Species Distribution Modelling R package
  • >= 0.7.0 DESCRIPTION

Size: 5.37 MB - Last synced: about 1 month ago - Pushed: 7 months ago

GuangchuangYu/skleid
State Key Laboratory of Emerging Infectious Diseases
  • * DESCRIPTION

Size: 165 KB - Last synced: 3 months ago - Pushed: over 6 years ago

christianparobek/skeleSim
Null models, performance testing, and power estimation with population simulations
  • * DESCRIPTION

Size: 11.5 MB - Last synced: 9 months ago - Pushed: about 4 years ago

TJGorrie/localXCR
A lite-weight locally hosted version of XChemReview for Fragalysis Aficionados
  • * DESCRIPTION

Size: 4.66 MB - Last synced: 8 months ago - Pushed: over 2 years ago

trvinh/domainArch
  • * DESCRIPTION

Size: 69.3 KB - Last synced: 8 days ago - Pushed: 8 days ago

BIONF/PhyloProfile
A phylogenetic profile analysis tool
  • * DESCRIPTION

Size: 1.94 MB - Last synced: 20 days ago - Pushed: 20 days ago

ttacail/isobxr
Stable isotope box-modelling
  • * isobxr/DESCRIPTION

Size: 26.8 MB - Last synced: 11 days ago - Pushed: 17 days ago

honzee/RNAseqCNV
R package for large-scale CNV analysis from RNA-seq
  • * DESCRIPTION

Size: 876 MB - Last synced: 5 months ago - Pushed: 5 months ago

BiodataAnalysisGroup/tripr
T-cell Receptor/Immunoglobulin Profiler {tripr}
  • * DESCRIPTION

Size: 10 MB - Last synced: 9 days ago - Pushed: 27 days ago

swarm-lab/editR
A Rmarkdown editor with instant preview
  • >= 0.6.0 DESCRIPTION

Size: 1.23 MB - Last synced: 7 months ago - Pushed: over 7 years ago

biostuff/CNVPanelizer
Reliable CNV detection in targeted sequencing applications
  • * DESCRIPTION

Size: 136 KB - Last synced: 7 months ago - Pushed: about 5 years ago

earnaud/MetaShARK-v2
MetaShARK (Metadata Shiny Automated Resource & Knowledge) is a R shiny app allowing the user to get information about Ecological Metadata Language and to fill in metadata for datasets according to this standard. This version of MetaShARK offers the user a R package to access the app.
  • * ..Rcheck/MetaShARK/DESCRIPTION

Size: 630 MB - Last synced: 3 months ago - Pushed: over 1 year ago

madelinm/Application_PAMPA
  • * PampaApp/DESCRIPTION

Size: 256 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago

CCICB/CRUX
  • >= 0.9.0 DESCRIPTION

Size: 11.7 MB - Last synced: 6 months ago - Pushed: 6 months ago

akhikolla/testpackages
  • * fuzzedpackages/Eagle/DESCRIPTION

Size: 613 MB - Last synced: about 1 year ago - Pushed: over 3 years ago

o2r-project/containerit
Package an R workspace and all dependencies as a Docker container
  • * DESCRIPTION

Size: 1.62 MB - Last synced: about 1 month ago - Pushed: over 2 years ago

hollorol/AgroMo
AgroMo is an Integrated Assessment and Modelling software that integrates 4M a CERES based crop model, the Biome-BGCMuSo biogeochemical and a simple agro-economical model in order to support decision makers at multiple scales.
  • * DESCRIPTION

Size: 434 MB - Last synced: 1 day ago - Pushed: 10 months ago

JGCRI/argus
A shiny app to interactively visualize data across scenarios, parameters and regions.
  • * DESCRIPTION

Size: 31.2 MB - Last synced: 7 months ago - Pushed: about 1 year ago

BIMIB-DISCo/LACE
LACE 2.0 is a new release of the LACE R Bioconductor package, which provides an interactive user interface to perform clonal evolution analyses for single-cell sequencing data, including longitudinal experiments. The tool also allows to annotate and retrieve the relevant variants based on user-defined criteria.
  • * DESCRIPTION

Size: 117 MB - Last synced: 14 days ago - Pushed: 16 days ago

ScitoVation/plethem
  • * DESCRIPTION

Size: 48.7 MB - Last synced: about 1 year ago - Pushed: almost 3 years ago

andreashandel/quizgrader
R package that allows automatic quiz grading and management
  • * DESCRIPTION

Size: 16.6 MB - Last synced: 17 days ago - Pushed: 17 days ago

r-pkg-team/r-cran-samr
SAM: Significance Analysis of Microarrays
  • * DESCRIPTION

Last synced: over 1 year ago

thomasp85/MSGFgui
A gui overlay and extension for MSGFplus
  • >= 0.4.0 DESCRIPTION

Size: 6.13 MB - Last synced: 11 days ago - Pushed: about 7 years ago

COVAIL/photon
RStudio Add-in to build Shiny apps utilizing the Electron framework
  • * DESCRIPTION

Size: 79.1 KB - Last synced: 11 days ago - Pushed: about 1 year ago

Anushka7310/rsqliteadmin Fork of rsqliteadmin/rsqliteadmin
  • * DESCRIPTION

Size: 298 KB - Last synced: 10 months ago - Pushed: over 1 year ago

RE-QDA/requal
Free and open-source software for computer-assisted qualitative data analysis
  • * DESCRIPTION

Size: 1.88 MB - Last synced: 1 day ago - Pushed: 2 days ago

radiant-rstats/radiant.data
Code for the Data menu in Radiant
  • >= 0.9.1 DESCRIPTION

Size: 23.7 MB - Last synced: 7 days ago - Pushed: 9 days ago

rhondabacher/methylscaper
  • * DESCRIPTION

Size: 12 MB - Last synced: 7 months ago - Pushed: 10 months ago

UBESP-DCTV/iobed.shiny
I.O.BED UBEP data collection
  • * DESCRIPTION

Size: 88.9 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

KWB-R/fakin.path.app
Shiny Application For Path Analysis
  • >= 0.7.3 DESCRIPTION

Size: 866 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago

systemPipeR/systemPipeShiny
A Shiny framework for workflow management and data visualization
  • * DESCRIPTION

Size: 26.1 MB - Last synced: 7 days ago - Pushed: 7 months ago

YasinEl/mzRAPP
Tool for reliability assessment of omics peprocessing
  • * DESCRIPTION

Size: 15.8 MB - Last synced: about 1 month ago - Pushed: 3 months ago

smouksassi/ggquickeda
ggplot2 and table1 summary statistics quick exploration of data
  • * DESCRIPTION

Size: 61.1 MB - Last synced: 22 days ago - Pushed: 26 days ago

ShinyFabio/ADViSELipidomics
ADViSELipidomics is a novel Shiny app for the preprocessing, analysis, and visualization of lipidomics data.
  • * DESCRIPTION

Size: 4.82 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

broadinstitute/infercnvApp
This is an R shiny app created as a user friendly way to run the R package infercnv. Infercnv is used to explore tumor single cell RNA-Seq data to identify evidence for somatic large-scale chromosomal copy number alterations, such as gains or deletions of entire chromosomes or large segments of chromosomes. More information on infercnv can be found on the infercnv Github Page
  • * DESCRIPTION

Size: 111 MB - Last synced: 5 months ago - Pushed: over 2 years ago

BioinformaticsFMRP/TCGAbiolinksGUI
TCGAbiolinksGUI code development for R/Bioconductor submission http://tcgabiolinks.fmrp.usp.br:3838/
  • >= 0.6.2 DESCRIPTION

Size: 90.4 MB - Last synced: 7 months ago - Pushed: almost 3 years ago

remnrem/luna
Luna R library for the analysis of sleep signals
  • * DESCRIPTION

Size: 9.21 MB - Last synced: 3 months ago - Pushed: 3 months ago

bnaras/samr
  • * DESCRIPTION

Size: 3.54 MB - Last synced: 8 months ago - Pushed: over 5 years ago

cran/samr
:exclamation: This is a read-only mirror of the CRAN R package repository. samr — SAM: Significance Analysis of Microarrays. Homepage: https://statweb.stanford.edu/~tibs/SAM
  • * DESCRIPTION

Size: 3.59 MB - Last synced: 7 months ago - Pushed: over 5 years ago

atusy/qntmap
Enhance quantitative analysis of EPMA maps with qntmap
  • * DESCRIPTION

Size: 9.72 MB - Last synced: 22 days ago - Pushed: about 3 years ago

geo047/EagleEverything
Whole-genome Multi-locus Association Mapping
  • * MyPackage/DESCRIPTION
  • * MyPackage/Eagle/DESCRIPTION
  • * MyPackage/Eagle.Rcheck/00_pkg_src/Eagle/DESCRIPTION
  • * MyPackage/Eagle.Rcheck/Eagle/DESCRIPTION

Size: 204 MB - Last synced: about 1 year ago - Pushed: over 2 years ago

JinmiaoChenLab/cytofkit2
  • * DESCRIPTION

Size: 7.82 MB - Last synced: 7 months ago - Pushed: about 2 years ago

oliviazz/SRAdb-app
Server and UI files for SRAdp WebApp
  • * DESCRIPTION

Size: 67.4 KB - Last synced: about 1 year ago - Pushed: over 7 years ago

vnijs/gitgadget
Rstudio addin for version control and assignment management using git
  • >= 0.7.5 DESCRIPTION

Size: 465 KB - Last synced: 3 months ago - Pushed: 5 months ago

RogerGinBer/RHermes
RHermes is a semi-targeted metabolomics package to deeply characterize biological and environmental samples.
  • * DESCRIPTION

Size: 12.8 MB - Last synced: 7 months ago - Pushed: 9 months ago

whtns/chevreul
Set of tools for interacting with seurat objects as projects
  • * DESCRIPTION

Size: 709 MB - Last synced: 29 days ago - Pushed: 29 days ago

DanieleBizzarri/MiMIR
This package contains a Rshiny webtool developed to allow the calculation of the metabolic predictors developed by the groups of MOLEPI and LCBC (LUMC), from raw Nightingale Health 1H-NMR metabolomics data.
  • * DESCRIPTION

Size: 47.7 MB - Last synced: 9 months ago - Pushed: about 1 year ago

KujawinskiLaboratory/Autotuner
This repo contains the code needed to run the R package Autotuner. Autotuner is used to identify proper parameters during metabolomics data processing.
  • * ..Rcheck/Autotuner/DESCRIPTION

Size: 96.3 MB - Last synced: 2 months ago - Pushed: over 3 years ago

mengchen18/pepset
  • * DESCRIPTION

Size: 15.6 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago