Ecosyste.ms: Repos

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Package Usage: cran: zCompositions

Treatment of Zeros, Left-Censored and Missing Values in Compositional Data Sets
21 versions
Latest release: 5 months ago
5 dependent packages
3,382 downloads last month

View more package details: https://packages.ecosyste.ms/registries/cran.r-project.org/packages/zCompositions

View more repository details: https://repos.ecosyste.ms/hosts/GitHub/repositories/Japal%2FzCompositions

Dependent Repos 15

stefpeschel/NetCoMi

Network construction, analysis, and comparison for microbial compositional data

* DESCRIPTION

Size: 16.7 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

jbisanz/qiime2R

Import qiime2 artifacts to R

>= 1.0.3.1 DESCRIPTION

Size: 3.65 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

fconstancias/DivComAnalyses

Community Analysis and visualisation using R

* DESCRIPTION

Size: 29.7 MB - Last synced: about 2 months ago - Pushed: about 2 months ago

florale/multilevelcoda

multilevelcoda R package for Bayesian compositional multilevel modelling

* DESCRIPTION

Size: 226 MB - Last synced: 3 days ago - Pushed: 5 days ago

mooreryan/featuretable

* DESCRIPTION

Size: 1.58 MB - Last synced: 8 months ago - Pushed: about 1 year ago

USGS-R/smwrQW 📦

Moved to: https://code.usgs.gov/water/analysis-tools/smwrQW

* DESCRIPTION

Size: 6.48 MB - Last synced: 4 months ago - Pushed: over 1 year ago

nhanhocu/metamicrobiomeR

An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studies using random effects models

* DESCRIPTION

Size: 46.4 MB - Last synced: 11 days ago - Pushed: over 3 years ago

matthias-da/robCompositions

Robust Methods for Compositional Data

* DESCRIPTION

Size: 4.29 MB - Last synced: 6 months ago - Pushed: 6 months ago

cran/robCompositions

:exclamation: This is a read-only mirror of the CRAN R package repository. robCompositions — Compositional Data Analysis

* DESCRIPTION

Size: 13 MB - Last synced: 7 months ago - Pushed: 9 months ago

egr95/R-codacore

An R package for learning log-ratio biomarkers from high-throughput sequencing data.

* DESCRIPTION

Size: 3.35 MB - Last synced: 8 months ago - Pushed: about 1 year ago

OxWearables/epicoda

Supports epidemiological analyses using compositional exposure variables

>= 1.3.2 DESCRIPTION

Size: 276 MB - Last synced: 2 months ago - Pushed: over 1 year ago

ggloor/aIc

tests to see if datasets are compostional

* DESCRIPTION

Size: 3.89 MB - Last synced: 14 days ago - Pushed: 5 months ago

Project goal is to updated Sediment Source Assessment Tool (Sed_SAT) for Determining the Sources of Fine-Grained Sediment - By Lillian E. Gorman Sanisaca, Allen C. Gellis, and David L. Lorenz with R-shiny framework.

* R-Portable/App/R-Portable/library/robCompositions/DESCRIPTION

Last synced: over 1 year ago

ggloor/ALDEx_bioc

ALDEx_bioc is the working directory for updating bioconductor

* DESCRIPTION

Size: 21 MB - Last synced: 23 days ago - Pushed: 5 months ago

cran/codacore

:exclamation: This is a read-only mirror of the CRAN R package repository. codacore — Learning Sparse Log-Ratios for Compositional Data

* DESCRIPTION

Size: 1000 KB - Last synced: 10 months ago - Pushed: almost 2 years ago

cran/aIc

:exclamation: This is a read-only mirror of the CRAN R package repository. aIc — Testing for Compositional Pathologies in Datasets. Homepage: https://github.com/ggloor/aIc Report bugs for this package: https://github.com/ggloor/aIc/issues

* DESCRIPTION

Size: 2.61 MB - Last synced: 10 months ago - Pushed: over 1 year ago

cran/metamicrobiomeR

:exclamation: This is a read-only mirror of the CRAN R package repository. metamicrobiomeR — Microbiome Data Analysis & Meta-Analysis with GAMLSS-BEZI & Random Effects. Homepage: https://github.com/nhanhocu/metamicrobiomeR Report bugs for this package: https://github.com/nhanhocu/metamicrobiomeR/issues

* DESCRIPTION

Size: 1.52 MB - Last synced: 8 months ago - Pushed: over 3 years ago

tpq/amalgam

An R package to amalgamate compositions in a data-driven way

* DESCRIPTION

Size: 134 KB - Last synced: about 1 year ago - Pushed: over 4 years ago

kstagaman/microbData

Data Wrangling for Microbiome Analyses

* DESCRIPTION

Size: 883 KB - Last synced: 2 months ago - Pushed: 2 months ago

akiledal/qiime2r_update

>= 1.0.3.1 DESCRIPTION

Size: 3.36 MB - Last synced: about 1 year ago - Pushed: almost 4 years ago

kstagaman/phyloseqCompanion

Provides additional functions to work with phyloseq objects

* DESCRIPTION

Size: 11.7 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago

jthmiller/qiime2R Fork of jbisanz/qiime2R

Import qiime2 artifacts to R

>= 1.0.3.1 DESCRIPTION

Size: 3.6 MB - Last synced: 11 months ago - Pushed: 11 months ago

lindanimoyo/qiime2R Fork of jbisanz/qiime2R

Import qiime2 artifacts to R

>= 1.0.3.1 DESCRIPTION

Size: 3.6 MB - Last synced: 11 months ago - Pushed: over 2 years ago

ggloor/CoDaSeq

Functions for compositional analysis of high throughput sequencing

* CoDaSeq/DESCRIPTION

Size: 13.1 MB - Last synced: about 1 month ago - Pushed: 6 months ago

SergioNoe/selbal Fork of malucalle/selbal

selbal: selection of balances for microbial signatures

* DESCRIPTION

Size: 438 KB - Last synced: about 2 months ago - Pushed: over 4 years ago

cran/countprop

:exclamation: This is a read-only mirror of the CRAN R package repository. countprop — Calculate Model-Based Metrics of Proportionality on Count-Based Compositional Data

* DESCRIPTION

Size: 260 KB - Last synced: 10 months ago - Pushed: 10 months ago

paytonyau/microbiome-meta-analysis Fork of nhanhocu/metamicrobiomeR

An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studies using random effects models