neurodebian | docker | Package Usage

neuroscout/neuroscout-paper

Neuroscout paper analysis repository

stretch-non-free Dockerfile

Size: 405 MB - Last synced: about 1 month ago - Pushed: over 1 year ago

effigies/nipype Fork of nipy/nipype

Workflows and interfaces for neuroimaging packages

latest docker/nipype_test_base/Dockerfile
latest docker/test-image-base/Dockerfile

Size: 35.9 MB - Last synced: 2 months ago - Pushed: 2 months ago

neurostuff/NiMARE

Coordinate- and image-based meta-analysis in Python

stretch-non-free Dockerfile

Size: 30.8 MB - Last synced: 4 days ago - Pushed: 4 days ago

brainlife/ezbids

A web service for semi-automated conversion of raw imaging data to BIDS

nd20.04-non-free handler/Dockerfile

Size: 10.6 MB - Last synced: 4 days ago - Pushed: 4 days ago

Inria-Empenn/narps_open_pipelines

A codebase reproducing the 70 pipelines of the NARPS study (Botvinik-Nezer et al., 2020) shared as an open resource for the community.

stretch-non-free Dockerfile

Size: 959 KB - Last synced: about 1 month ago - Pushed: about 1 month ago

lncd/lncdtools

a collection of small utlities useful for neuroimaging research

buster-non-free Dockerfile

Size: 1.35 MB - Last synced: about 2 months ago - Pushed: about 2 months ago

TIGRLab/rtms_optimize

Repo for building rTMS coil optimization method

xenial container/connectome_workbench/Dockerfile

Size: 18.6 MB - Last synced: about 1 year ago - Pushed: about 5 years ago

smalvika/BSL_Structuraltargeting_Gear

Scripts for structural TMS targeting. The input is a T1w.nii

trusty Dockerfile

Size: 29.4 MB - Last synced: 23 days ago - Pushed: over 1 year ago

uc-cdis/bc-cwl

xenial version1/brainCommonPipelineDocker4CWL/docker-freesurfer-master/Dockerfile

Size: 42 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

jono3030/MIRACL Fork of AICONSlab/MIRACL

Multi-modal Image Registration And Connectivity anaLysis

xenial docker/Dockerfile

Size: 340 MB - Last synced: 15 days ago - Pushed: 16 days ago

NrgXnat/docker-images

Dockerfiles and metadata for XNAT's container service

nd20.04 dcm2niix/Dockerfile
nd14.04 ecat-to-dicom/Dockerfile

Size: 5.13 MB - Last synced: 2 months ago - Pushed: 7 months ago

khanlab/neuroglia-core

Core repository for neuroglia singularity image

stretch-non-free Dockerfile

Last synced: over 1 year ago

qMRLab/qMRLab

Quantitative MRI Made Easy with qMRLab: MRI software for data Simulation, analysis and visualization

focal Deploy/Docker/CI/Dockerfile
focal Deploy/Docker/MINIMAL/Dockerfile

Size: 407 MB - Last synced: 4 days ago - Pushed: 4 days ago

nipy/heudiconv

A flexible DICOM converter for organizing brain imaging data into structured directory layouts

bullseye Dockerfile

Size: 11.3 MB - Last synced: 10 days ago - Pushed: 11 days ago

brainlife/app-tractseg

Brainlife App for MIC-DKFZ/TractSeg. A tool for fast and accurate white matter bundle segmentation from Diffusion MRI using pretrained pytorch ML model.

stretch-non-free Dockerfile

Size: 20.9 MB - Last synced: 2 months ago - Pushed: about 1 year ago

TRAMPOLINO (TRActography Meta-Pipeline cOmmand LINe tOol) is a CLI for brain tractography. It leverages Nipype to offer an immediate way to reconstruct an orientation distribution function, use it to track the streamlines and eventually filter them, all using existing software toolboxes.

buster-non-free containers/Dockerfile

Size: 110 KB - Last synced: 9 days ago - Pushed: over 1 year ago

jerdra/BOONStim

Bayesian Optimization of NeuroStimulation

xenial containers/connectome_workbench/Dockerfile

Size: 20.1 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

radiome-lab/radiome 📦

Configurable Pipeline for the Analysis of Medical Imaging Data

xenial-non-free Dockerfile

Size: 5.79 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

neurodata/m2g

NeuroData's MRI to Graphs (m2g) - connectome estimation package and pipeline

bionic-non-free Dockerfile

Size: 89 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

EmotionCognitionLab/flywheel

Scripts and gears for use with flywheel.io

buster gears/ASL/asl-dicom-to-nifti/Dockerfile
xenial gears/multiEchoICA/Dockerfile

Size: 112 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

AICONSlab/MIRACL

Multi-modal Image Registration And Connectivity anaLysis

focal docker/Dockerfile

Size: 340 MB - Last synced: 15 days ago - Pushed: 16 days ago

bacaron/dockerfiles Fork of brainlife/dockerfiles

repository to store various dockerfiles used to build docker containers that are used across multiple brainlife apps

nd16.04 ants/Dockerfile
nd18.04-non-free atlaskit/Dockerfile
stretch-non-free connectome-workbench/Dockerfile
nd18.04-non-free fsl-6.0.4/Dockerfile
nd18.04-non-free mcr-2018a/Dockerfile
nd20.04-non-free mcr-2020a/Dockerfile
trusty mcr-neurodebian-r2016a/Dockerfile
xenial mcr-neurodebian1604-r2017a/Dockerfile
nd18.04-non-free mcr-r2019a/Dockerfile
stretch mrtrix3/3.0.3/Dockerfile
stretch mrtrix3/Dockerfile
nd20.04-non-free stage/Dockerfile
stretch-non-free tractseg/Dockerfile

Size: 61.2 MB - Last synced: 8 months ago - Pushed: 8 months ago

brainlife/dockerfiles

repository to store various dockerfiles used to build docker containers that are used across multiple brainlife apps

nd16.04 ants/Dockerfile
nd18.04-non-free atlaskit/Dockerfile
stretch-non-free connectome-workbench/Dockerfile
nd18.04-non-free fsl-6.0.4/Dockerfile
nd18.04-non-free mcr-2018a/Dockerfile
nd20.04-non-free mcr-2020a/Dockerfile
trusty mcr-neurodebian-r2016a/Dockerfile
xenial mcr-neurodebian1604-r2017a/Dockerfile
nd18.04-non-free mcr-r2019a/Dockerfile
stretch mrtrix3/Dockerfile
nd20.04-non-free stage/Dockerfile
stretch-non-free tractseg/Dockerfile

Size: 61.2 MB - Last synced: 2 months ago - Pushed: 4 months ago

bids-apps/CPAC

BIDS Application for the Configurable Pipeline for the Analysis of Connectomes (C-PAC)

xenial-non-free Dockerfile

Size: 65.4 MB - Last synced: 26 days ago - Pushed: 26 days ago

AliceGem/tvb-multiscale-risingnet Fork of the-virtual-brain/tvb-multiscale

Integration between TVB and NEST, for multiscale (co)simulations .

buster docker/Dockerfile

Size: 2.24 GB - Last synced: 3 months ago - Pushed: 9 months ago

courtois-neuromod/anat-processing

Pipeline to process anatomical data, including microstructure metrics from DWI and MT data

xenial containers/antsfsl/Dockerfile

Size: 94.7 KB - Last synced: 15 days ago - Pushed: over 1 year ago

neuroneural/nshor_docker

Containerized fMRI Preprocessing Pipeline

bionic-non-free Dockerfile

Size: 669 MB - Last synced: 13 days ago - Pushed: 13 days ago

jdkent/NiMARE Fork of neurostuff/NiMARE

Coordinate- and Image-based meta-analysis in Python

stretch-non-free Dockerfile

Size: 33.9 MB - Last synced: 22 days ago - Pushed: 22 days ago

JulioAPeraza/NiMARE Fork of neurostuff/NiMARE

Coordinate- and image-based meta-analysis in Python

stretch-non-free Dockerfile

Size: 30.5 MB - Last synced: 4 days ago - Pushed: 4 days ago

tsalo/NiMARE Fork of neurostuff/NiMARE

Coordinate- and Image-based meta-analysis in Python

stretch-non-free Dockerfile

Size: 38.5 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

yifan0330/NiMARE Fork of neurostuff/NiMARE

Coordinate- and image-based meta-analysis in Python

stretch-non-free Dockerfile

Size: 33.3 MB - Last synced: 8 months ago - Pushed: 8 months ago

bids-apps/tracula

implements Freesurfer's TRACULA (TRActs Constrained by UnderLying Anatomy) tool for cross-sectional as well as longitudinal (multi session) input data.

bionic-non-free Dockerfile

Size: 103 KB - Last synced: 26 days ago - Pushed: 26 days ago

PeerHerholz/bids_bep16_conv

A small package to implement conversions between BEP-16 (Diffusion Derivatives) compliant datasets and other/existing software outputs.

stretch-non-free Dockerfile

Size: 4.95 MB - Last synced: about 1 month ago - Pushed: over 1 year ago

pgleeson/neuralensemble-docker Fork of NeuralEnsemble/neuralensemble-docker

Docker images for neuroscience

bionic base/Dockerfile

Size: 92.8 KB - Last synced: 23 days ago - Pushed: 24 days ago

the-virtual-brain/tvb-multiscale

Integration between TVB and NEST, for multiscale (co)simulations .

bullseye docker/Dockerfile

Size: 2.36 GB - Last synced: about 1 month ago - Pushed: 3 months ago

TIGRLab/BOONStim Fork of jerdra/BOONStim

Bayesian Optimization of NeuroStimulation

xenial containers/connectome_workbench/Dockerfile

Size: 20.1 MB - Last synced: 3 months ago - Pushed: 3 months ago

datalad/datalad-registry

latest Dockerfile

Size: 1.54 MB - Last synced: 11 days ago - Pushed: 12 days ago

radiome-lab/preprocessing

anatomical preproc in Radiome

xenial-non-free Dockerfile

Size: 27.7 MB - Last synced: 6 days ago - Pushed: 6 days ago

vistalab/docker

A repository for vistalab docker files

trusty fsl/fsl-v5.0/Dockerfile
trusty utils/dcm2nii/Dockerfile

Size: 23.7 MB - Last synced: 2 months ago - Pushed: over 4 years ago

dynage/lhab_pipelines

bionic-non-free Dockerfile

Size: 59.4 MB - Last synced: 10 months ago - Pushed: over 3 years ago

HBClab/fsl-docker

fsl dockerfile

stretch-non-free Dockerfile

Size: 1000 Bytes - Last synced: about 1 year ago - Pushed: about 4 years ago

openjamoses/EASE2022

This is the replication package on Studying the Practices of Deploying Machine Learning Projects on Docker

stretch Datasets/raw-data/Dockerfiles/logs/nipy/mindboggle/latest/install/Dockerfile

Size: 253 MB - Last synced: about 1 year ago - Pushed: over 2 years ago

margaretmahan/docker-environments 📦

Docker environments

xenial docker_envs/dcm2niix_env/Dockerfile

Size: 3.91 KB - Last synced: about 1 year ago - Pushed: about 3 years ago

felix11h/docker-reproduction-of-published-images

Here I test whether Dockerfiles which were published as part of a research article can still be compiled some time later after publication.

jessie Ghosh_2017/Dockerfile

Size: 1.01 MB - Last synced: 10 months ago - Pushed: over 6 years ago

iPadawan/neuroflow

stretch-non-free Dockerfile

Size: 28.1 MB - Last synced: about 1 year ago - Pushed: almost 6 years ago

josephsmann/nipype_tutorial

notebooks I have scribbled on and don't want to lose if docker dies for some reason

stretch-non-free Dockerfile

Size: 40.6 MB - Last synced: about 1 year ago - Pushed: over 6 years ago

shnizzedy/neurodebian-bionic-non-free-ANTs-2.3.4

neurodebian:bionic-non-free + ANTs v2.3.4

bionic-non-free Dockerfile

Size: 7.81 KB - Last synced: about 1 year ago - Pushed: over 3 years ago

neuro/nps

The Neuroimage Processing System

jessie components/dicom-receiver/Dockerfile

Size: 21.5 KB - Last synced: about 1 year ago - Pushed: almost 7 years ago

nencki-lobi/bids-flow

Connecting orthanc, heudiconv and mriqc

xenial bxh-xcede/Dockerfile

Size: 1.02 MB - Last synced: about 1 year ago - Pushed: almost 4 years ago

boanddavid/neurodavid

A docker image for data analysis of neuroimaging.

stretch Dockerfile

Size: 43.9 KB - Last synced: about 1 year ago - Pushed: over 4 years ago

neuropoly/docker

Collection of dockerfiles

jessie debian_8.0/Dockerfile

Size: 1.95 KB - Last synced: 25 days ago - Pushed: about 7 years ago

ClandininLab/containers

Commonly used containers and scripts to build them

buster cmtk/Dockerfile

Size: 3.91 KB - Last synced: about 1 year ago - Pushed: over 3 years ago

jokedurnez/Psychosis

latest Dockerfile

Size: 21.3 MB - Last synced: about 1 year ago - Pushed: about 6 years ago

ReproNim/simple_workflow

A very simple, re-executable neuroimaging publication (code)

jessie Dockerfile

Size: 2.91 MB - Last synced: about 2 months ago - Pushed: over 2 years ago

ReproNim/openneuro-tools

bullseye Dockerfile

Size: 9.77 KB - Last synced: 10 months ago - Pushed: about 3 years ago

ReproNim/reproin

A setup for automatic generation of shareable, version-controlled BIDS datasets from MR scanners

bullseye Dockerfile

Size: 1.63 MB - Last synced: 3 months ago - Pushed: 6 months ago

wenh81/docker-mcr

MCR (Matlab Compiled Runtime) Docker Container

trusty neurodebian-r2016a/Dockerfile
xenial neurodebian1604-r2017a/Dockerfile

Size: 5.86 KB - Last synced: about 1 year ago - Pushed: over 5 years ago

hachterberg/fsl-bet-container

FSL BET Dockerfile

trusty Dockerfile

Size: 5.86 KB - Last synced: 7 months ago - Pushed: over 6 years ago

fgiuste7/Docker

stretch-non-free Neuro_Debian/Dockerfile

Size: 434 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago

C0C0AN/EEGprep

A BIDSapp for automated preprocessing of EEG data.

stretch-non-free Dockerfile

Size: 74.2 KB - Last synced: 10 months ago - Pushed: almost 4 years ago

akhanf/giraffe_test

stretch-non-free GIRAFFE/code/Dockerfile

Size: 5.86 KB - Last synced: 6 days ago - Pushed: over 4 years ago

khanlab/neuroglia-core

Core repository for neuroglia singularity image

stretch-non-free Dockerfile

Size: 58.6 KB - Last synced: 6 days ago - Pushed: almost 4 years ago

ReproNim/reproducible-imaging

stretch-non-free Dockerfile

Size: 1.32 MB - Last synced: 10 months ago - Pushed: almost 6 years ago

kitchell/app-LBspectrum

This application will calculate the Laplace Beltrami spectrum of 3D surfaces in the .vtk file format using the LBS function provided with Mindboggle (http://www.mindboggle.info/). This application computes the Laplace-Beltrami spectrum using a linear finite element method, following the definitions and steps given in Reuter et al.'s 2009 paper: "Discrete Laplace-Beltrami Operators for Shape Analysis and Segmentation". Options for normalization are: None, "area", "index", "areaindex". Normalization by area uses the area of the 2D structure as in Reuter et al. 2006. Normalization by index will divide the eigenvalues by their index to account for linear increase of Eigenvalue magnitude (Weyl's law in 2D) as suggested in Reuter et al. (2006) and used in BrainPrint (Wachinger et al. 2015). The default is areaindex, which will do both. References (please cite when using for publication): Martin Reuter et al. Discrete Laplace-Beltrami Operators for Shape Analysis and Segmentation. Computers & Graphics 33(3):381-390, 2009 Martin Reuter et al. Laplace-Beltrami spectra as "Shape-DNA" of surfaces and solids. Computer-Aided Design 38(4):342-366, 2006