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Package Usage: maven: com.milaboratory:milib

Yet another Java library for Next Generation Sequencing (NGS) data processing.
31 versions
Latest release: over 1 year ago
2 dependent packages

View more package details: https://packages.ecosyste.ms/registries/repo1.maven.org/packages/com.milaboratory:milib

Dependent Repos 9

mikessh/vdjtools
Post-analysis of immune repertoire sequencing data
  • 1.8.3 build.gradle

Size: 31.6 MB - Last synced: 2 months ago - Pushed: 2 months ago

M-Suzy/Bio_SequenceAlignment
  • 1.1.1 pom.xml

Size: 64.5 KB - Last synced: about 1 year ago - Pushed: about 2 years ago

milaboratory/mixcr
MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
  • $milibVersion build.gradle.kts

Size: 46.1 MB - Last synced: 6 months ago - Pushed: 6 months ago

med-team/vdjtools
Description of VDJTOOLS from https://github.com/mikessh/vdjtools
  • 1.8.3 build.gradle

Last synced: over 1 year ago

apereo-tesuto/tesuto
Core code for Tesuto
  • 1.3 tesuto-dependencies/pom.xml

Size: 33.3 MB - Last synced: about 1 year ago - Pushed: over 2 years ago

mikessh/migmap
HTS-compatible wrapper for IgBlast V-(D)-J mapping tool
  • 1.2 build.gradle

Size: 14.6 MB - Last synced: 8 months ago - Pushed: over 6 years ago

moritz123/r-ged-ns
R Skripte, R Workspaces usw.
  • 1.0-SNAPSHOT mixcr/jar/mixcr/META-INF/maven/com.milaboratory/mitools/pom.xml
  • 1.0-SNAPSHOT mixcr/jar/mixcr/META-INF/maven/com.milaboratory/mitools/pom.xml
  • 1.0-SNAPSHOT mixcr/jar/mixcr/META-INF/maven/com.milaboratory/mixcr/pom.xml
  • 1.0-SNAPSHOT mixcr/jar/mixcr/META-INF/maven/com.milaboratory/mixcr/pom.xml

Size: 7.67 MB - Last synced: almost 2 years ago

ClonoSuite/clonocalc-plot
GUI to support the interpretation of next-generation sequencing data of human or mouse immune repertoires.
  • 1.4-SNAPSHOT ClonoCalc/PipelineGUI/Third-Party-src/mixcr-1.7.3/pom.xml

Size: 141 MB - Last synced: over 1 year ago

shamim8888/vdjtools Fork of mikessh/vdjtools
Post-analysis of immune repertoire sequencing data
  • 1.0 pom.xml

Size: 24.5 MB - Last synced: about 2 months ago - Pushed: over 8 years ago

dshulgin2015/vdjdb Fork of antigenomics/vdjmatch
Functional annotation of immune repertoires
  • 1.0 build.gradle

Size: 2.98 MB - Last synced: over 1 year ago - Pushed: over 8 years ago

antigenomics/vdjstruct 📦
[DEPRECATED]
  • 1.1.1 app/pom.xml

Size: 65.2 MB - Last synced: 27 days ago - Pushed: over 8 years ago

iansetliff/migmap Fork of sdwfrost/migmap
HTS-compatible wrapper for IgBlast V-(D)-J mapping tool
  • 1.2 build.gradle

Size: 11.8 MB - Last synced: over 1 year ago - Pushed: over 8 years ago

sdwfrost/migmap Fork of mikessh/migmap
HTS-compatible wrapper for IgBlast V-(D)-J mapping tool
  • 1.2 build.gradle

Size: 11.8 MB - Last synced: about 1 year ago - Pushed: over 8 years ago

mikessh/polyfid
Polymerase fidelity estimates
  • 1.5 build.gradle

Size: 17 MB - Last synced: 10 months ago - Pushed: about 7 years ago

katyaputintseva/mixcr Fork of milaboratory/mixcr
MiXCR is a universal software for fast and accurate analysis of T- and B- cell receptor repertoire sequencing data.
  • 1.4-SNAPSHOT pom.xml

Size: 1.26 MB - Last synced: 3 months ago - Pushed: over 8 years ago

ncbi/AptaSuite
  • 1.4 META-INF/maven/aptasuite/aptasuite/pom.xml
  • 1.4 pom.xml

Size: 2.36 MB - Last synced: 8 months ago - Pushed: almost 2 years ago

Scott1009/vdjtools Fork of mikessh/vdjtools
Post-analysis of immune repertoire sequencing data
  • 1.0 pom.xml

Size: 24.5 MB - Last synced: 10 months ago - Pushed: over 8 years ago

learn-bioinformatics/vdjtools Fork of mikessh/vdjtools
Post-analysis of immune repertoire sequencing data
  • 1.8.3 build.gradle

Size: 31.5 MB - Last synced: 11 months ago - Pushed: about 2 years ago

GenomicsNX/vdjtools Fork of mikessh/vdjtools
Post-analysis of immune repertoire sequencing data
  • 1.8.3 build.gradle

Size: 31.5 MB - Last synced: 2 months ago - Pushed: over 4 years ago

Andelyu/vdjmatch Fork of antigenomics/vdjmatch
Matching T-cell repertoire against a database of TCR antigen specificities
  • 1.8.3 build.gradle

Size: 5.38 MB - Last synced: 10 months ago - Pushed: over 5 years ago

Feilijiang/vdjtools Fork of mikessh/vdjtools
Post-analysis of immune repertoire sequencing data
  • 1.8.3 pom.xml

Size: 31.3 MB - Last synced: 10 months ago - Pushed: almost 6 years ago

JING-XINXING/mixcr Fork of milaboratory/mixcr
MiXCR is a universal software for fast and accurate extraction of T- and B- cell receptor repertoires from any type of sequencing data. Free for academic use only.
  • 1.13 pom.xml

Size: 3.84 MB - Last synced: 9 months ago - Pushed: about 3 years ago

antigenomics/vdjmatch
⚙️ Matching T-cell repertoire against a database of TCR antigen specificities
  • 1.8.3 build.gradle

Size: 5.38 MB - Last synced: 27 days ago - Pushed: over 5 years ago

bgruening/mixcr Fork of milaboratory/mixcr
MiXCR is a universal software for fast and accurate extraction and downstream analysis of T- and B- cell receptor repertoires from any type of sequencing data. Free for academic use only.
  • $milibVersion build.gradle.kts

Size: 46.1 MB - Last synced: about 2 months ago - Pushed: about 2 months ago