Ecosyste.ms: Repos

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Package Usage: maven: net.imglib2:imglib2

A multidimensional, type-agnostic image processing library.
55 versions
Latest release: 7 months ago
18 dependent packages

View more package details: https://packages.ecosyste.ms/registries/repo1.maven.org/packages/net.imglib2:imglib2

View more repository details: https://repos.ecosyste.ms/hosts/GitHub/repositories/imglib%2Fimglib2

Dependent Repos 206

bioimage-io/onnx-java-interface
  • pom.xml

Size: 150 KB - Last synced: 2 months ago - Pushed: 2 months ago

duderstadt-lab/mars-fx
  • pom.xml

Size: 4.02 MB - Last synced: about 4 hours ago - Pushed: about 5 hours ago

cmhulbert/n5-imglib2 Fork of saalfeldlab/n5-imglib2
  • pom.xml

Size: 338 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

cmhulbert/paintera Fork of saalfeldlab/paintera
  • 5.12.0 pom.xml

Size: 42.9 MB - Last synced: 13 days ago - Pushed: 14 days ago

imagej/imagej-omero
Server- and client-side communication between ImageJ and OMERO
  • pom.xml

Size: 1.4 MB - Last synced: about 2 months ago - Pushed: 8 months ago

openspim/micromanager
Our fork of micromanager
  • 2.4.0 buildscripts/ivy.xml

Size: 208 MB - Last synced: 2 months ago - Pushed: about 8 years ago

bigdataviewer/bigdataviewer-core
ImgLib2-based viewer for registered SPIM stacks and more
  • pom.xml

Size: 21.3 MB - Last synced: 4 days ago - Pushed: 4 days ago

saalfeldlab/paintera
  • 5.12.0 pom.xml

Size: 42.2 MB - Last synced: 5 months ago - Pushed: 5 months ago

trackmate-sc/TrackMate-Oneat
TrackMate extension for oneat for verifying lineage trees
  • pom.xml

Size: 431 KB - Last synced: about 1 month ago - Pushed: about 1 month ago

mobie/mobie-viewer-fiji
  • pom.xml

Size: 107 MB - Last synced: about 2 months ago - Pushed: about 2 months ago

saalfeldlab/n5-imglib2
  • pom.xml

Size: 491 KB - Last synced: 3 months ago - Pushed: 3 months ago

imagej/imagej-plugins-commands
Core ImageJ commands
  • pom.xml

Size: 528 KB - Last synced: about 1 month ago - Pushed: about 1 month ago

imagej/imagej-scripting
ImageJ-specific applications of the SciJava script languages
  • pom.xml

Size: 181 KB - Last synced: about 2 months ago - Pushed: 3 months ago

duderstadt-lab/mars-core
Mars documentation
  • pom.xml

Size: 10.1 MB - Last synced: 9 days ago - Pushed: 10 days ago

jeanollion/bacmman
  • 5.13.0 bacmman-core/pom.xml

Size: 6.71 MB - Last synced: 5 days ago - Pushed: 5 days ago

saalfeldlab/label-utilities-spark
  • 5.8.0 pom.xml

Size: 593 KB - Last synced: 6 days ago - Pushed: 6 days ago

embl-cba/imagej-utils
  • 5.11.1 pom.xml

Size: 25.5 MB - Last synced: 24 days ago - Pushed: 24 days ago

imagej/imagej-legacy
ImageJ+ImageJ2 compatibility layer
  • pom.xml

Size: 2.73 MB - Last synced: 21 days ago - Pushed: 21 days ago

imglib/imglib2-realtransform
Spatial transformations for ImgLib2
  • pom.xml

Size: 665 KB - Last synced: 19 days ago - Pushed: 20 days ago

saalfeldlab/template-building
Scripts and code relating to building anatomical templates.
  • pom.xml

Size: 3.64 MB - Last synced: 9 months ago - Pushed: 10 months ago

saalfeldlab/intensity-transform
Transform intensities in montage.
  • java/pom.xml
  • 2.0.0-SNAPSHOT java/pom.xml

Size: 260 KB - Last synced: 9 months ago - Pushed: over 8 years ago

saalfeldlab/n5
Not HDF5
  • pom.xml

Size: 922 KB - Last synced: about 1 month ago - Pushed: about 1 month ago

imglib/imglib2-ui 📦
Interactive image visualization using ImgLib2
  • pom.xml

Size: 433 KB - Last synced: 2 months ago - Pushed: about 3 years ago

saalfeldlab/n5-spark
Spark-driven processing utilities for N5 datasets.
  • pom.xml

Size: 493 KB - Last synced: 2 months ago - Pushed: 2 months ago

saalfeldlab/hot-knife
  • pom.xml

Size: 1.89 MB - Last synced: 5 days ago - Pushed: 5 days ago

bigdataviewer/bigdataviewer-vistools
Helpers to use BigDataViewer as a quick visualization tool in other projects.
  • pom.xml

Size: 638 KB - Last synced: 9 days ago - Pushed: 9 days ago

LC-PolScope/IjPlugins
ImageJ Plugins
  • 2.0.0-SNAPSHOT PsfFrequencyFilter/pom.xml

Size: 160 KB - Last synced: 2 months ago - Pushed: over 11 years ago

ClearVolume/imglib2-clearvolume
  • pom.xml

Size: 1.32 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

juglab/labkit-ui
Advanced Tool for Labeling And Segmentation
  • pom.xml

Size: 3.07 MB - Last synced: about 2 months ago - Pushed: about 2 months ago

PreibischLab/multiview-reconstruction
Software for the reconstruction of multi-view microscopic acquisitions like Selective Plane Illumination Microscopy (SPIM) Data
  • pom.xml

Size: 6.85 MB - Last synced: 9 days ago - Pushed: 9 days ago

mobie/mobie-io
  • pom.xml

Size: 1.65 MB - Last synced: 12 days ago - Pushed: 12 days ago

chicoronny/RonnyTrackMate
Linear Tracker for TrackMate
  • pom.xml

Size: 10 MB - Last synced: about 1 month ago - Pushed: about 1 year ago

bigdataprocessor/bigdataprocessor2
  • 5.12.0 pom.xml

Size: 290 MB - Last synced: 2 months ago - Pushed: 2 months ago

saalfeldlab/z-spacing
Estimate the correct positions of sections of three dimensional image data.
  • pom.xml

Size: 1.21 MB - Last synced: 9 months ago - Pushed: about 1 year ago

imagej/imagej-common
ImageJ core data model
  • pom.xml

Size: 2.4 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

scenerygraphics/sciview
sciview is a tool for visualization and interaction with ND image and mesh data
  • * build.gradle.kts

Size: 15.1 MB - Last synced: 4 days ago - Pushed: 5 days ago

scijava/pom-scijava
Friendly base POM for all SciJava-based software
  • 5.12.0 pom.xml

Size: 1.96 MB - Last synced: 18 days ago - Pushed: 19 days ago

mastodon-sc/mastodon
Mastodon – a large-scale tracking and track-editing framework for large, multi-view images.
  • pom.xml

Size: 16.6 MB - Last synced: 9 days ago - Pushed: 10 days ago

saalfeldlab/stitching-spark
Reconstruct big images from overlapping tiled images on a Spark cluster.
  • pom.xml

Size: 2.4 MB - Last synced: 7 months ago - Pushed: 7 months ago

saalfeldlab/bigwarp
A tool for manual pointwise deformable registration using bigdataviewer.
  • pom.xml

Size: 3.03 MB - Last synced: 6 days ago - Pushed: 6 days ago

imglib/imglib2-roi
Regions of interest (ROIs) and labelings for ImgLib2
  • pom.xml

Size: 1.87 MB - Last synced: 19 days ago - Pushed: 20 days ago

juglab/labkit-pixel-classification
  • pom.xml

Size: 16.9 MB - Last synced: about 1 year ago - Pushed: about 1 year ago

imagej/imagej-ui-swing
ImageJ UI for Java Swing.
  • pom.xml

Size: 1.16 MB - Last synced: 5 days ago - Pushed: 5 days ago

KingPrimes/TWGBot 📦
Warframe游戏查询的QQ机器人
  • 5.13.1-SNAPSHOT bot-image-togif/pom.xml

Size: 126 MB - Last synced: 9 months ago - Pushed: almost 2 years ago

bogovicj/bigdataviewer-core Fork of bigdataviewer/bigdataviewer-core
ImgLib2-based viewer for registered SPIM stacks and more
  • pom.xml

Size: 19.7 MB - Last synced: 8 months ago - Pushed: 8 months ago

anchoranalysis/anchor
Core libraries for Anchor - excluding plugins and projects.
  • ${imglib2.version} anchor-image-core/pom.xml
  • ${imglib2.version} anchor-image-voxel/pom.xml

Size: 27 MB - Last synced: 30 days ago - Pushed: 5 months ago

zachrootcs/TrackMate-Drift-Remover-Action
  • pom.xml

Size: 10.7 KB - Last synced: about 2 months ago - Pushed: almost 2 years ago

zachrootcs/TrackMate-Single-Molecule-Action-Suite
  • TrackMate-Modified-Log-Detector/pom.xml
  • TrackMateKymograph/pom.xml
  • Trackmate_DiffusionCoefficientCalculator/pom.xml

Size: 15.6 KB - Last synced: about 2 months ago - Pushed: almost 2 years ago

nanthony21/PWSMicroManager
A fork of the popular Micro-Manager open-source application tailored to the acquisition of Partial Wave Spectroscopic Microscopy data.
  • 5.6.3 buildscripts/ivy.xml

Size: 289 MB - Last synced: 7 months ago - Pushed: over 1 year ago

SpimCat/imagequalitymetrics-microscopeautopilot
  • pom.xml

Size: 3.59 MB - Last synced: 14 days ago - Pushed: over 3 years ago

imagej/imagej-deprecated
Deprecated ImageJ packages
  • pom.xml

Size: 975 KB - Last synced: about 2 months ago - Pushed: about 1 year ago

bigdataprocessor/imagej-cluster
  • pom.xml

Size: 7.67 MB - Last synced: 10 months ago - Pushed: over 2 years ago

imagej/imagej-mesh
Data structures and I/O for meshes
  • pom.xml

Size: 367 KB - Last synced: about 2 months ago - Pushed: about 1 year ago

tinevez/monogenic
Tentative complex Fourier filtering for D. Sage team.
  • pom.xml

Size: 152 KB - Last synced: 2 months ago - Pushed: about 9 years ago

victorhos/tcc-criptografia
código do tcc
  • 2.2.1 pom.xml

Size: 332 KB - Last synced: 10 months ago - Pushed: almost 9 years ago

fiji/Trainable_Segmentation
Fiji library to perform image segmentation based on the Weka learning schemes
  • pom.xml

Size: 68.9 MB - Last synced: 20 days ago - Pushed: 2 months ago

imglib/imglib2-ij
Translation between ImgLib & ImageJ data structures (both 1.x and 2)
  • pom.xml
  • 5.9.0 pom.xml

Size: 839 KB - Last synced: 19 days ago - Pushed: 19 days ago

saalfeldlab/imglib2-label-multisets
Implementation of label multisets as an ImgLib2 native type.
  • pom.xml

Size: 9.53 MB - Last synced: 24 days ago - Pushed: 24 days ago

prashant003/interimage-2
An open-source, high-performance platform for automatic, knowledge-based interpretation of remote sensing and medical image data over MapReduce.
  • 2.0.0-SNAPSHOT interimage-data/pom.xml

Size: 11.1 MB - Last synced: 5 months ago - Pushed: over 9 years ago

saalfeldlab/n5-zarr
Zarr filesystem backend for N5
  • pom.xml

Size: 293 KB - Last synced: 7 days ago - Pushed: 7 days ago

imglib/imglib2-algorithm-fft
Fast Fourier Transform routine for ImgLib2
  • pom.xml

Size: 91.8 KB - Last synced: 2 months ago - Pushed: almost 2 years ago

imglib/imglib2-algorithm-gpl
Image processing algorithms for ImgLib2 (GPL-licensed)
  • pom.xml

Size: 670 KB - Last synced: 20 days ago - Pushed: 20 days ago

imglib/imglib2-algorithm
Image processing algorithms for ImgLib2
  • pom.xml

Size: 3.2 MB - Last synced: 19 days ago - Pushed: 19 days ago

kmader/spark-scifio
A Spark-interface for the io.scif and other libraries to take advantage of the ImageJ2 ecosystem.
  • pom.xml

Size: 52.7 KB - Last synced: about 1 month ago - Pushed: about 1 month ago

flimlib/slim-plugin 📦
An ImageJ plugin for combined spectral-lifetime image analysis [UNMAINTAINED]
  • pom.xml

Size: 5.58 MB - Last synced: 2 months ago - Pushed: over 4 years ago

trakem2/TrakEM2
ImageJ plugin for morphological data mining, 3D modeling and image stitching, registration, editing and annotation.
  • pom.xml

Size: 13 MB - Last synced: about 1 month ago - Pushed: 2 months ago

axtimwalde/experiments
Immature experimental stuff
  • pom.xml

Size: 80.1 KB - Last synced: about 1 year ago - Pushed: over 3 years ago

cruk-microscopy/RSOM-Vessel-Analysis
A Fiji plugin to analyze optoacoustic images of blood vessel
  • pom.xml

Size: 431 KB - Last synced: over 1 year ago - Pushed: about 3 years ago

andmccall/Colocalization_by_Cross_Correlation
  • 5.11.1 pom.xml

Size: 4.6 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

saalfeldlab/section-sort
Sorting serial sections using a TSP-solver
  • pom.xml

Size: 295 KB - Last synced: 9 months ago - Pushed: about 7 years ago

aderoo001/PDL-groupe5
  • 5.9.2 backend/pom.xml

Size: 26.9 MB - Last synced: about 1 year ago - Pushed: about 3 years ago

scijava/gradle-catalog
  • 5.12.0 pom.xml

Size: 254 KB - Last synced: 7 months ago - Pushed: 8 months ago

clij/clijx-weka
  • 5.8.0 pom.xml

Size: 12 MB - Last synced: 10 months ago - Pushed: over 2 years ago

SingleMolecule/iSBatch
Hierarchical batch plugin for ImageJ
  • pom.xml

Size: 19.5 MB - Last synced: 7 months ago - Pushed: about 8 years ago

tinevez/Optofluidics
  • pom.xml

Size: 883 KB - Last synced: 2 months ago - Pushed: almost 9 years ago

PreibischLab/Drosophila_Single_Cell_Brain_Circadian
  • pom.xml

Size: 877 KB - Last synced: 10 months ago - Pushed: almost 2 years ago

flimlib/flimj-ops
ImageJ Ops plugins for fluorescence lifetime image analysis
  • pom.xml

Size: 12 MB - Last synced: 2 months ago - Pushed: over 1 year ago

leannao/imglib2-algorithm Fork of imglib/imglib2-algorithm
Image processing algorithms for ImgLib2
  • pom.xml

Size: 1.36 MB - Last synced: 2 months ago - Pushed: over 8 years ago

nicjac/PHANTAST-FIJI
Repository for the FIJI/ImageJ implementation of the phase contrast microscopy segmentation toolbox (PHANTAST)
  • pom.xml

Size: 29.3 KB - Last synced: 7 months ago - Pushed: about 3 years ago

applied-systems-biology/java-imglib2-deconvolve-rif
Deconvolution simulation example
  • pom.xml

Size: 54.7 KB - Last synced: 9 months ago - Pushed: about 2 years ago

AllenInstitute/atPipeline
Pipeline code for Array Tomography (AT)
  • 2.0.2 at-modules/pom.xml

Size: 100 MB - Last synced: 7 months ago - Pushed: about 2 years ago

scifio/scifio
SCientific Image Format Input & Output: a flexible, extensible framework for image I/O. *EXPERIMENTAL* All API is subject to change, so depend at your own risk! See also @openmicroscopy/bioformats.
  • pom.xml

Size: 182 MB - Last synced: 17 days ago - Pushed: 2 months ago

larrylindsey/Larrys-Fiji-Plugins
A collection of Java code intended to run as part of the fiji (https://github.com/fiji/fiji) project
  • ${imglib2.version} pom.xml

Size: 352 KB - Last synced: about 1 year ago - Pushed: over 10 years ago

bnorthan/TrueNorthImageJScripts
Assorted ImageJ scripts and utilities
  • ${imglib2.version} SimpleSimpleITKDecon/pom.xml
  • ${imglib2.version} SimpleYacuDecu/SimpleYacuDecuWrapper/pom.xml

Size: 1.86 MB - Last synced: about 1 month ago - Pushed: over 8 years ago

saalfeldlab/n5-viewer
BigDataViewer-based tool for visualizing multichannel multiscale N5 datasets.
  • pom.xml

Size: 484 KB - Last synced: 25 days ago - Pushed: 25 days ago

csachs/rioh
Raw Images over HTTP Microformat/convention
  • 3.2.1 java/rioh-jax/pom.xml

Size: 18.6 KB - Last synced: 10 days ago - Pushed: over 6 years ago

franco-giordano/fiuba-taller3-final
  • fiubamate-plugin/pom.xml

Size: 90.8 KB - Last synced: about 1 year ago - Pushed: over 2 years ago

tinevez/TrackMate-extras 📦
Some extra modules for TrackMate
  • pom.xml

Size: 33.2 KB - Last synced: 2 months ago - Pushed: over 2 years ago

kapoorlab/ONT 📦
ONeat Training
  • 5.8.0 JavaCodes/ONEATFijiClickMaker/pom.xml

Size: 53 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

trackmate-sc/TrackMate-examples
A simple repository that shows how to extend TrackMate with your own modules.
  • pom.xml

Size: 122 KB - Last synced: 2 months ago - Pushed: over 1 year ago

tpietzsch/paramaxflow-jni
jni wrapper for c++ parametric maxflow implementation
  • pom.xml

Size: 254 KB - Last synced: about 1 month ago - Pushed: over 9 years ago

clij/clij-docs
Online documentation and reference for CLIJ
  • pom.xml

Size: 71.5 MB - Last synced: 14 days ago - Pushed: about 3 years ago

hammerlab/flowdec
TensorFlow Deconvolution for Microscopy Data
  • java/flowdec/pom.xml

Size: 19 MB - Last synced: 11 days ago - Pushed: about 2 years ago

CellProfiler/knime-bridge
ZMQ connection between CellProfiler and Knime
  • pom.xml

Size: 250 KB - Last synced: about 1 month ago - Pushed: almost 9 years ago