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Package Usage: maven: net.imglib2:imglib2
A multidimensional, type-agnostic image processing library.
55 versions
Latest release: 7 months ago
18 dependent packages
View more package details: https://packages.ecosyste.ms/registries/repo1.maven.org/packages/net.imglib2:imglib2
View more repository details: https://repos.ecosyste.ms/hosts/GitHub/repositories/imglib%2Fimglib2
Dependent Repos 206
bioimage-io/onnx-java-interface
- pom.xml
Size: 150 KB - Last synced: 2 months ago - Pushed: 2 months ago
duderstadt-lab/mars-fx
- pom.xml
Size: 4.02 MB - Last synced: about 4 hours ago - Pushed: about 5 hours ago
cmhulbert/n5-imglib2 Fork of saalfeldlab/n5-imglib2
- pom.xml
Size: 338 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
cmhulbert/paintera Fork of saalfeldlab/paintera
- 5.12.0 pom.xml
Size: 42.9 MB - Last synced: 13 days ago - Pushed: 14 days ago
imagej/imagej-omero
Server- and client-side communication between ImageJ and OMERO- pom.xml
Size: 1.4 MB - Last synced: about 2 months ago - Pushed: 8 months ago
openspim/micromanager
Our fork of micromanager- 2.4.0 buildscripts/ivy.xml
Size: 208 MB - Last synced: 2 months ago - Pushed: about 8 years ago
bigdataviewer/bigdataviewer-core
ImgLib2-based viewer for registered SPIM stacks and more- pom.xml
Size: 21.3 MB - Last synced: 4 days ago - Pushed: 4 days ago
saalfeldlab/paintera
- 5.12.0 pom.xml
Size: 42.2 MB - Last synced: 5 months ago - Pushed: 5 months ago
trackmate-sc/TrackMate-Oneat
TrackMate extension for oneat for verifying lineage trees- pom.xml
Size: 431 KB - Last synced: about 1 month ago - Pushed: about 1 month ago
mobie/mobie-viewer-fiji
- pom.xml
Size: 107 MB - Last synced: about 2 months ago - Pushed: about 2 months ago
imagej/imagej-plugins-commands
Core ImageJ commands- pom.xml
Size: 528 KB - Last synced: about 1 month ago - Pushed: about 1 month ago
imagej/imagej-scripting
ImageJ-specific applications of the SciJava script languages- pom.xml
Size: 181 KB - Last synced: about 2 months ago - Pushed: 3 months ago
duderstadt-lab/mars-core
Mars documentation- pom.xml
Size: 10.1 MB - Last synced: 9 days ago - Pushed: 10 days ago
jeanollion/bacmman
- 5.13.0 bacmman-core/pom.xml
Size: 6.71 MB - Last synced: 5 days ago - Pushed: 5 days ago
saalfeldlab/label-utilities-spark
- 5.8.0 pom.xml
Size: 593 KB - Last synced: 6 days ago - Pushed: 6 days ago
imagej/imagej-legacy
ImageJ+ImageJ2 compatibility layer- pom.xml
Size: 2.73 MB - Last synced: 21 days ago - Pushed: 21 days ago
imglib/imglib2-realtransform
Spatial transformations for ImgLib2- pom.xml
Size: 665 KB - Last synced: 19 days ago - Pushed: 20 days ago
saalfeldlab/template-building
Scripts and code relating to building anatomical templates.- pom.xml
Size: 3.64 MB - Last synced: 9 months ago - Pushed: 10 months ago
saalfeldlab/intensity-transform
Transform intensities in montage.- java/pom.xml
- 2.0.0-SNAPSHOT java/pom.xml
Size: 260 KB - Last synced: 9 months ago - Pushed: over 8 years ago
saalfeldlab/n5
Not HDF5- pom.xml
Size: 922 KB - Last synced: about 1 month ago - Pushed: about 1 month ago
imglib/imglib2-ui 📦
Interactive image visualization using ImgLib2- pom.xml
Size: 433 KB - Last synced: 2 months ago - Pushed: about 3 years ago
saalfeldlab/n5-spark
Spark-driven processing utilities for N5 datasets.- pom.xml
Size: 493 KB - Last synced: 2 months ago - Pushed: 2 months ago
bigdataviewer/bigdataviewer-vistools
Helpers to use BigDataViewer as a quick visualization tool in other projects.- pom.xml
Size: 638 KB - Last synced: 9 days ago - Pushed: 9 days ago
LC-PolScope/IjPlugins
ImageJ Plugins- 2.0.0-SNAPSHOT PsfFrequencyFilter/pom.xml
Size: 160 KB - Last synced: 2 months ago - Pushed: over 11 years ago
ClearVolume/imglib2-clearvolume
- pom.xml
Size: 1.32 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
juglab/labkit-ui
Advanced Tool for Labeling And Segmentation- pom.xml
Size: 3.07 MB - Last synced: about 2 months ago - Pushed: about 2 months ago
PreibischLab/multiview-reconstruction
Software for the reconstruction of multi-view microscopic acquisitions like Selective Plane Illumination Microscopy (SPIM) Data- pom.xml
Size: 6.85 MB - Last synced: 9 days ago - Pushed: 9 days ago
chicoronny/RonnyTrackMate
Linear Tracker for TrackMate- pom.xml
Size: 10 MB - Last synced: about 1 month ago - Pushed: about 1 year ago
bigdataprocessor/bigdataprocessor2
- 5.12.0 pom.xml
Size: 290 MB - Last synced: 2 months ago - Pushed: 2 months ago
saalfeldlab/z-spacing
Estimate the correct positions of sections of three dimensional image data.- pom.xml
Size: 1.21 MB - Last synced: 9 months ago - Pushed: about 1 year ago
imagej/imagej-common
ImageJ core data model- pom.xml
Size: 2.4 MB - Last synced: about 1 month ago - Pushed: about 1 month ago
scenerygraphics/sciview
sciview is a tool for visualization and interaction with ND image and mesh data- * build.gradle.kts
Size: 15.1 MB - Last synced: 4 days ago - Pushed: 5 days ago
scijava/pom-scijava
Friendly base POM for all SciJava-based software- 5.12.0 pom.xml
Size: 1.96 MB - Last synced: 18 days ago - Pushed: 19 days ago
mastodon-sc/mastodon
Mastodon – a large-scale tracking and track-editing framework for large, multi-view images.- pom.xml
Size: 16.6 MB - Last synced: 9 days ago - Pushed: 10 days ago
saalfeldlab/stitching-spark
Reconstruct big images from overlapping tiled images on a Spark cluster.- pom.xml
Size: 2.4 MB - Last synced: 7 months ago - Pushed: 7 months ago
saalfeldlab/bigwarp
A tool for manual pointwise deformable registration using bigdataviewer.- pom.xml
Size: 3.03 MB - Last synced: 6 days ago - Pushed: 6 days ago
imglib/imglib2-roi
Regions of interest (ROIs) and labelings for ImgLib2- pom.xml
Size: 1.87 MB - Last synced: 19 days ago - Pushed: 20 days ago
juglab/labkit-pixel-classification
- pom.xml
Size: 16.9 MB - Last synced: about 1 year ago - Pushed: about 1 year ago
imagej/imagej-ui-swing
ImageJ UI for Java Swing.- pom.xml
Size: 1.16 MB - Last synced: 5 days ago - Pushed: 5 days ago
KingPrimes/TWGBot 📦
Warframe游戏查询的QQ机器人- 5.13.1-SNAPSHOT bot-image-togif/pom.xml
Size: 126 MB - Last synced: 9 months ago - Pushed: almost 2 years ago
bogovicj/bigdataviewer-core Fork of bigdataviewer/bigdataviewer-core
ImgLib2-based viewer for registered SPIM stacks and more- pom.xml
Size: 19.7 MB - Last synced: 8 months ago - Pushed: 8 months ago
anchoranalysis/anchor
Core libraries for Anchor - excluding plugins and projects.- ${imglib2.version} anchor-image-core/pom.xml
- ${imglib2.version} anchor-image-voxel/pom.xml
Size: 27 MB - Last synced: 30 days ago - Pushed: 5 months ago
zachrootcs/TrackMate-Drift-Remover-Action
- pom.xml
Size: 10.7 KB - Last synced: about 2 months ago - Pushed: almost 2 years ago
zachrootcs/TrackMate-Single-Molecule-Action-Suite
- TrackMate-Modified-Log-Detector/pom.xml
- TrackMateKymograph/pom.xml
- Trackmate_DiffusionCoefficientCalculator/pom.xml
Size: 15.6 KB - Last synced: about 2 months ago - Pushed: almost 2 years ago
nanthony21/PWSMicroManager
A fork of the popular Micro-Manager open-source application tailored to the acquisition of Partial Wave Spectroscopic Microscopy data.- 5.6.3 buildscripts/ivy.xml
Size: 289 MB - Last synced: 7 months ago - Pushed: over 1 year ago
SpimCat/imagequalitymetrics-microscopeautopilot
- pom.xml
Size: 3.59 MB - Last synced: 14 days ago - Pushed: over 3 years ago
imagej/imagej-deprecated
Deprecated ImageJ packages- pom.xml
Size: 975 KB - Last synced: about 2 months ago - Pushed: about 1 year ago
bigdataprocessor/imagej-cluster
- pom.xml
Size: 7.67 MB - Last synced: 10 months ago - Pushed: over 2 years ago
imagej/imagej-mesh
Data structures and I/O for meshes- pom.xml
Size: 367 KB - Last synced: about 2 months ago - Pushed: about 1 year ago
tinevez/monogenic
Tentative complex Fourier filtering for D. Sage team.- pom.xml
Size: 152 KB - Last synced: 2 months ago - Pushed: about 9 years ago
victorhos/tcc-criptografia
código do tcc- 2.2.1 pom.xml
Size: 332 KB - Last synced: 10 months ago - Pushed: almost 9 years ago
fiji/Trainable_Segmentation
Fiji library to perform image segmentation based on the Weka learning schemes- pom.xml
Size: 68.9 MB - Last synced: 20 days ago - Pushed: 2 months ago
imglib/imglib2-ij
Translation between ImgLib & ImageJ data structures (both 1.x and 2)- pom.xml
- 5.9.0 pom.xml
Size: 839 KB - Last synced: 19 days ago - Pushed: 19 days ago
saalfeldlab/imglib2-label-multisets
Implementation of label multisets as an ImgLib2 native type.- pom.xml
Size: 9.53 MB - Last synced: 24 days ago - Pushed: 24 days ago
prashant003/interimage-2
An open-source, high-performance platform for automatic, knowledge-based interpretation of remote sensing and medical image data over MapReduce.- 2.0.0-SNAPSHOT interimage-data/pom.xml
Size: 11.1 MB - Last synced: 5 months ago - Pushed: over 9 years ago
saalfeldlab/n5-zarr
Zarr filesystem backend for N5- pom.xml
Size: 293 KB - Last synced: 7 days ago - Pushed: 7 days ago
imglib/imglib2-algorithm-fft
Fast Fourier Transform routine for ImgLib2- pom.xml
Size: 91.8 KB - Last synced: 2 months ago - Pushed: almost 2 years ago
imglib/imglib2-algorithm-gpl
Image processing algorithms for ImgLib2 (GPL-licensed)- pom.xml
Size: 670 KB - Last synced: 20 days ago - Pushed: 20 days ago
imglib/imglib2-algorithm
Image processing algorithms for ImgLib2- pom.xml
Size: 3.2 MB - Last synced: 19 days ago - Pushed: 19 days ago
kmader/spark-scifio
A Spark-interface for the io.scif and other libraries to take advantage of the ImageJ2 ecosystem.- pom.xml
Size: 52.7 KB - Last synced: about 1 month ago - Pushed: about 1 month ago
flimlib/slim-plugin 📦
An ImageJ plugin for combined spectral-lifetime image analysis [UNMAINTAINED]- pom.xml
Size: 5.58 MB - Last synced: 2 months ago - Pushed: over 4 years ago
trakem2/TrakEM2
ImageJ plugin for morphological data mining, 3D modeling and image stitching, registration, editing and annotation.- pom.xml
Size: 13 MB - Last synced: about 1 month ago - Pushed: 2 months ago
axtimwalde/experiments
Immature experimental stuff- pom.xml
Size: 80.1 KB - Last synced: about 1 year ago - Pushed: over 3 years ago
cruk-microscopy/RSOM-Vessel-Analysis
A Fiji plugin to analyze optoacoustic images of blood vessel- pom.xml
Size: 431 KB - Last synced: over 1 year ago - Pushed: about 3 years ago
andmccall/Colocalization_by_Cross_Correlation
- 5.11.1 pom.xml
Size: 4.6 MB - Last synced: about 1 month ago - Pushed: about 1 month ago
saalfeldlab/section-sort
Sorting serial sections using a TSP-solver- pom.xml
Size: 295 KB - Last synced: 9 months ago - Pushed: about 7 years ago
aderoo001/PDL-groupe5
- 5.9.2 backend/pom.xml
Size: 26.9 MB - Last synced: about 1 year ago - Pushed: about 3 years ago
scijava/gradle-catalog
- 5.12.0 pom.xml
Size: 254 KB - Last synced: 7 months ago - Pushed: 8 months ago
SingleMolecule/iSBatch
Hierarchical batch plugin for ImageJ- pom.xml
Size: 19.5 MB - Last synced: 7 months ago - Pushed: about 8 years ago
PreibischLab/Drosophila_Single_Cell_Brain_Circadian
- pom.xml
Size: 877 KB - Last synced: 10 months ago - Pushed: almost 2 years ago
flimlib/flimj-ops
ImageJ Ops plugins for fluorescence lifetime image analysis- pom.xml
Size: 12 MB - Last synced: 2 months ago - Pushed: over 1 year ago
leannao/imglib2-algorithm Fork of imglib/imglib2-algorithm
Image processing algorithms for ImgLib2- pom.xml
Size: 1.36 MB - Last synced: 2 months ago - Pushed: over 8 years ago
nicjac/PHANTAST-FIJI
Repository for the FIJI/ImageJ implementation of the phase contrast microscopy segmentation toolbox (PHANTAST)- pom.xml
Size: 29.3 KB - Last synced: 7 months ago - Pushed: about 3 years ago
applied-systems-biology/java-imglib2-deconvolve-rif
Deconvolution simulation example- pom.xml
Size: 54.7 KB - Last synced: 9 months ago - Pushed: about 2 years ago
AllenInstitute/atPipeline
Pipeline code for Array Tomography (AT)- 2.0.2 at-modules/pom.xml
Size: 100 MB - Last synced: 7 months ago - Pushed: about 2 years ago
scifio/scifio
SCientific Image Format Input & Output: a flexible, extensible framework for image I/O. *EXPERIMENTAL* All API is subject to change, so depend at your own risk! See also @openmicroscopy/bioformats.- pom.xml
Size: 182 MB - Last synced: 17 days ago - Pushed: 2 months ago
larrylindsey/Larrys-Fiji-Plugins
A collection of Java code intended to run as part of the fiji (https://github.com/fiji/fiji) project- ${imglib2.version} pom.xml
Size: 352 KB - Last synced: about 1 year ago - Pushed: over 10 years ago
bnorthan/TrueNorthImageJScripts
Assorted ImageJ scripts and utilities- ${imglib2.version} SimpleSimpleITKDecon/pom.xml
- ${imglib2.version} SimpleYacuDecu/SimpleYacuDecuWrapper/pom.xml
Size: 1.86 MB - Last synced: about 1 month ago - Pushed: over 8 years ago
saalfeldlab/n5-viewer
BigDataViewer-based tool for visualizing multichannel multiscale N5 datasets.- pom.xml
Size: 484 KB - Last synced: 25 days ago - Pushed: 25 days ago
csachs/rioh
Raw Images over HTTP Microformat/convention- 3.2.1 java/rioh-jax/pom.xml
Size: 18.6 KB - Last synced: 10 days ago - Pushed: over 6 years ago
franco-giordano/fiuba-taller3-final
- fiubamate-plugin/pom.xml
Size: 90.8 KB - Last synced: about 1 year ago - Pushed: over 2 years ago
tinevez/TrackMate-extras 📦
Some extra modules for TrackMate- pom.xml
Size: 33.2 KB - Last synced: 2 months ago - Pushed: over 2 years ago
kapoorlab/ONT 📦
ONeat Training- 5.8.0 JavaCodes/ONEATFijiClickMaker/pom.xml
Size: 53 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
trackmate-sc/TrackMate-examples
A simple repository that shows how to extend TrackMate with your own modules.- pom.xml
Size: 122 KB - Last synced: 2 months ago - Pushed: over 1 year ago
tpietzsch/paramaxflow-jni
jni wrapper for c++ parametric maxflow implementation- pom.xml
Size: 254 KB - Last synced: about 1 month ago - Pushed: over 9 years ago
clij/clij-docs
Online documentation and reference for CLIJ- pom.xml
Size: 71.5 MB - Last synced: 14 days ago - Pushed: about 3 years ago
hammerlab/flowdec
TensorFlow Deconvolution for Microscopy Data- java/flowdec/pom.xml
Size: 19 MB - Last synced: 11 days ago - Pushed: about 2 years ago
CellProfiler/knime-bridge
ZMQ connection between CellProfiler and Knime- pom.xml
Size: 250 KB - Last synced: about 1 month ago - Pushed: almost 9 years ago