Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

Package Usage: maven: net.imglib2:imglib2-realtransform

View more package details: https://packages.ecosyste.ms/registries/repo1.maven.org/packages/net.imglib2:imglib2-realtransform

Dependent Repos 74

duderstadt-lab/mars-fx
  • pom.xml

Size: 4.02 MB - Last synced: 5 days ago - Pushed: 6 days ago

cmhulbert/n5-imglib2 Fork of saalfeldlab/n5-imglib2
  • pom.xml

Size: 338 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

cmhulbert/paintera Fork of saalfeldlab/paintera
  • pom.xml

Size: 42.9 MB - Last synced: 9 days ago - Pushed: 10 days ago

imagej/imagej-omero
Server- and client-side communication between ImageJ and OMERO
  • pom.xml

Size: 1.4 MB - Last synced: about 1 month ago - Pushed: 8 months ago

openspim/micromanager
Our fork of micromanager
  • 2.0.0-beta-29 buildscripts/ivy.xml

Size: 208 MB - Last synced: about 2 months ago - Pushed: about 8 years ago

bigdataviewer/bigdataviewer-core
ImgLib2-based viewer for registered SPIM stacks and more
  • pom.xml

Size: 21.3 MB - Last synced: about 8 hours ago - Pushed: about 9 hours ago

saalfeldlab/paintera
  • 3.1.2 pom.xml

Size: 42.2 MB - Last synced: 5 months ago - Pushed: 5 months ago

trackmate-sc/TrackMate-Oneat
TrackMate extension for oneat for verifying lineage trees
  • pom.xml

Size: 431 KB - Last synced: about 1 month ago - Pushed: about 1 month ago

saalfeldlab/n5-imglib2
  • pom.xml

Size: 491 KB - Last synced: 3 months ago - Pushed: 3 months ago

duderstadt-lab/mars-core
Mars documentation
  • pom.xml

Size: 10.1 MB - Last synced: 5 days ago - Pushed: 6 days ago

imagej/imagej-legacy
ImageJ+ImageJ2 compatibility layer
  • pom.xml

Size: 2.73 MB - Last synced: 17 days ago - Pushed: 17 days ago

saalfeldlab/template-building
Scripts and code relating to building anatomical templates.
  • pom.xml

Size: 3.64 MB - Last synced: 9 months ago - Pushed: 9 months ago

saalfeldlab/intensity-transform
Transform intensities in montage.
  • java/pom.xml
  • 2.0.0-SNAPSHOT java/pom.xml

Size: 260 KB - Last synced: 9 months ago - Pushed: over 8 years ago

imglib/imglib2-ui 📦
Interactive image visualization using ImgLib2
  • pom.xml

Size: 433 KB - Last synced: about 2 months ago - Pushed: about 3 years ago

saalfeldlab/hot-knife
  • 3.1.1 pom.xml

Size: 1.89 MB - Last synced: 1 day ago - Pushed: 1 day ago

bigdataviewer/bigdataviewer-vistools
Helpers to use BigDataViewer as a quick visualization tool in other projects.
  • pom.xml

Size: 638 KB - Last synced: 5 days ago - Pushed: 5 days ago

LC-PolScope/IjPlugins
ImageJ Plugins
  • 2.0.0-SNAPSHOT PsfFrequencyFilter/pom.xml

Size: 160 KB - Last synced: about 2 months ago - Pushed: about 11 years ago

PreibischLab/multiview-simulation
Code for simulating a multi-view acquisition including attenuation, convolution, reduced sampling and poission noise
  • pom.xml

Size: 327 KB - Last synced: 7 months ago - Pushed: almost 2 years ago

juglab/labkit-ui
Advanced Tool for Labeling And Segmentation
  • pom.xml

Size: 3.07 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

PreibischLab/multiview-reconstruction
Software for the reconstruction of multi-view microscopic acquisitions like Selective Plane Illumination Microscopy (SPIM) Data
  • pom.xml

Size: 6.85 MB - Last synced: 5 days ago - Pushed: 5 days ago

saalfeldlab/z-spacing
Estimate the correct positions of sections of three dimensional image data.
  • pom.xml

Size: 1.21 MB - Last synced: 9 months ago - Pushed: about 1 year ago

scijava/pom-scijava
Friendly base POM for all SciJava-based software
  • 3.1.2 pom.xml

Size: 1.96 MB - Last synced: 14 days ago - Pushed: 15 days ago

saalfeldlab/bigwarp
A tool for manual pointwise deformable registration using bigdataviewer.
  • pom.xml

Size: 3.03 MB - Last synced: 2 days ago - Pushed: 2 days ago

imglib/imglib2-roi
Regions of interest (ROIs) and labelings for ImgLib2
  • pom.xml

Size: 1.87 MB - Last synced: 15 days ago - Pushed: 16 days ago

bogovicj/bigdataviewer-core Fork of bigdataviewer/bigdataviewer-core
ImgLib2-based viewer for registered SPIM stacks and more
  • pom.xml

Size: 19.7 MB - Last synced: 8 months ago - Pushed: 8 months ago

tinevez/monogenic
Tentative complex Fourier filtering for D. Sage team.
  • pom.xml

Size: 152 KB - Last synced: 2 months ago - Pushed: almost 9 years ago

imglib/imglib2-algorithm
Image processing algorithms for ImgLib2
  • pom.xml

Size: 3.2 MB - Last synced: 15 days ago - Pushed: 15 days ago

kmader/spark-scifio
A Spark-interface for the io.scif and other libraries to take advantage of the ImageJ2 ecosystem.
  • pom.xml

Size: 52.7 KB - Last synced: 27 days ago - Pushed: 27 days ago

trakem2/TrakEM2
ImageJ plugin for morphological data mining, 3D modeling and image stitching, registration, editing and annotation.
  • pom.xml

Size: 13 MB - Last synced: about 1 month ago - Pushed: 2 months ago

axtimwalde/experiments
Immature experimental stuff
  • 2.0.0-beta-39-SNAPSHOT pom.xml

Size: 80.1 KB - Last synced: about 1 year ago - Pushed: over 3 years ago

cruk-microscopy/RSOM-Vessel-Analysis
A Fiji plugin to analyze optoacoustic images of blood vessel
  • pom.xml

Size: 431 KB - Last synced: about 1 year ago - Pushed: about 3 years ago

scijava/gradle-catalog
  • 3.1.1 pom.xml

Size: 254 KB - Last synced: 7 months ago - Pushed: 7 months ago

leannao/imglib2-algorithm Fork of imglib/imglib2-algorithm
Image processing algorithms for ImgLib2
  • pom.xml

Size: 1.36 MB - Last synced: 2 months ago - Pushed: over 8 years ago

applied-systems-biology/java-imglib2-deconvolve-rif
Deconvolution simulation example
  • pom.xml

Size: 54.7 KB - Last synced: 9 months ago - Pushed: about 2 years ago

BIOP/qupath-extension-abba
QuPath extension for Aligning Big Brains and Atlases
  • 3.1.2 build.gradle

Size: 112 KB - Last synced: about 1 month ago - Pushed: about 1 month ago

hammerlab/flowdec
TensorFlow Deconvolution for Microscopy Data
  • java/flowdec/pom.xml

Size: 19 MB - Last synced: 7 days ago - Pushed: about 2 years ago

clij/clij-core
  • pom.xml

Size: 6.4 MB - Last synced: 10 months ago - Pushed: over 2 years ago

clij/clij
CLIJ is deprecated. Visit CLIJ2
  • pom.xml

Size: 25.7 MB - Last synced: 10 days ago - Pushed: almost 3 years ago

tpietzsch/TileServer
Imglib2 Tile Server for CATMAID
  • 2.0.0-SNAPSHOT pom.xml

Size: 125 KB - Last synced: about 1 year ago - Pushed: about 11 years ago

chicoronny/RonnyLemming
My personal branch of Lemming
  • pom.xml

Size: 1.52 MB - Last synced: 28 days ago - Pushed: over 7 years ago

yhulaila/misEngendros
código sucio y feo
  • TrackMate-TrackMate_-3.5.3/pom.xml

Size: 379 MB - Last synced: about 1 year ago - Pushed: over 5 years ago

trackmate-sc/MaMuT
The fiji plugin for Massive Annotation
  • pom.xml

Size: 2.22 MB - Last synced: about 1 month ago - Pushed: about 1 year ago

fiji/SPIM_Registration
Deprecated, instead check out: https://github.com/preibischLab/multiview-reconstruction & https://github.com/PreibischLab/BigStitcher
  • pom.xml

Size: 5.87 MB - Last synced: 7 months ago - Pushed: about 1 year ago

axtimwalde/volume-renderer
Primitive ImgLib2 volume renderer
  • pom.xml

Size: 147 KB - Last synced: about 1 year ago - Pushed: over 9 years ago

catmaid/catmaid-tools
Utilities for CATMAID, mostly ImgLib2 based
  • 2.0.0-SNAPSHOT pom.xml

Size: 55.7 KB - Last synced: about 2 months ago - Pushed: over 6 years ago

fjug/NordenTools
All the stuff I do to make the Norden-Lab happy...
  • OrthoIntegrator/pom.xml

Size: 145 KB - Last synced: about 1 month ago - Pushed: about 10 years ago

applied-systems-biology/java-imglib2-microbench
Benchmark for common image processing algorithms
  • pom.xml

Size: 66.4 KB - Last synced: 9 months ago - Pushed: about 2 years ago

image-transform-converters/image-transform-converters
Conversion between spatial transformations of various formats / parametrizations
  • pom.xml

Size: 277 KB - Last synced: 7 months ago - Pushed: 7 months ago

elect86/imagej_
  • 3.0.0 legacy/build.gradle.kts
  • 3.0.0 ops/build.gradle.kts
  • ops/pom.xml

Size: 109 MB - Last synced: 9 months ago - Pushed: over 3 years ago

PreibischLab/BigStitcher
ImgLib2/BDV implementation of Stitching for large datasets
  • pom.xml

Size: 20.7 MB - Last synced: 7 days ago - Pushed: 7 days ago

mdcurtis/micromanager-upstream
Micro-Manager Open Source Microscopy Software (http://valelab.ucsf.edu/~MM/MMwiki/). SVN-tracking Git repository
  • 2.0.0-beta-29 buildscripts/ivy.xml

Size: 205 MB - Last synced: 7 months ago - Pushed: almost 8 years ago

saalfeldlab/ntakt
Kotlin extension functions for imglib2. Preliminary name.
  • 3.0.0 build.gradle.kts

Size: 1 MB - Last synced: 8 months ago - Pushed: over 1 year ago

thanneken/SpectralRTI_Toolkit
Process Spectral RTI Images in ImageJ
  • 2.0.0-beta-37 pom.xml

Size: 35.3 MB - Last synced: 11 months ago - Pushed: over 1 year ago

applied-systems-biology/imglib2-segment-cells
Segments cells with a distance transform watershed
  • pom.xml

Size: 36.1 KB - Last synced: 9 months ago - Pushed: about 2 years ago

BIOP/qupath-biop-extensions 📦
Extensions for QuPath, written by the BIOP
  • 3.1.1 build.gradle

Size: 620 KB - Last synced: 5 months ago - Pushed: over 2 years ago

UU-cellbiology/bvv-playground
playing with BigVolumeViewer LUTs/gamma/render
  • pom.xml

Size: 1.56 MB - Last synced: 4 months ago - Pushed: 4 months ago

imagej/imagej-ops
ImageJ Ops: "Write once, run anywhere" image processing
  • pom.xml

Size: 14.2 MB - Last synced: about 1 month ago - Pushed: about 2 months ago

bigdataviewer/spimdata
representation of multi-angle, multi-channel (etc.) SPIM images and their registration
  • pom.xml

Size: 365 KB - Last synced: 18 days ago - Pushed: 18 days ago

imagej/imagej-omero-legacy
ImageJ 1.x support for ImageJ-OMERO
  • pom.xml

Size: 123 KB - Last synced: about 1 month ago - Pushed: 11 months ago

applied-systems-biology/imglib2-segment-glomeruli
ImgLib2 implementation of the glomeruli segmentation published by Klingberg et al. 2017
  • pom.xml

Size: 52.7 KB - Last synced: 9 months ago - Pushed: about 2 years ago

elephant-track/elephant-client
A client implementation of ELEPHANT
  • pom.xml

Size: 3.61 MB - Last synced: 3 months ago - Pushed: 4 months ago

imglib/imglib2-tests
ImgLib tests that are not bound to specific ImgLib projects
  • pom.xml

Size: 539 KB - Last synced: about 2 months ago - Pushed: almost 2 years ago

imglib/imglib2-tutorials
Examples how to work with ImgLib2
  • pom.xml

Size: 22.9 MB - Last synced: about 2 months ago - Pushed: almost 2 years ago

bigdataviewer/bigvolumeviewer-core
  • 3.0.0 build.gradle.kts
  • pom.xml

Size: 1.27 MB - Last synced: about 2 months ago - Pushed: 8 months ago

bnorthan/deconware-algorithms
Low level deconvolution algorithm code written in Java using Imglib.
  • pom.xml

Size: 387 KB - Last synced: about 1 month ago - Pushed: about 9 years ago

trackmate-sc/TrackMate
TrackMate is your buddy for your everyday tracking.
  • pom.xml

Size: 11.9 MB - Last synced: about 12 hours ago - Pushed: 2 days ago

hanslovsky/em-thickness-estimation
Estimate thickness of slices (or at local points) of EM data.
  • pom.xml

Size: 2.06 MB - Last synced: 9 months ago - Pushed: about 9 years ago

gennadiryan/qupath-tps
Fork of qupath-extension-warpy; TPS registration in QuPath
  • 3.1.2 build.gradle.kts

Size: 2.43 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

BIOP/qupath-extension-biop
An extension for QuPath with some tools made at the BIOP.
  • 3.1.1 build.gradle

Size: 529 KB - Last synced: 4 months ago - Pushed: 4 months ago

pickcellslab/pickcells-api
The PickCells public API
  • pickcells-imgdb/pom.xml
  • 2.0.0-beta-29 pom-pickcells/pom.xml

Last synced: 12 months ago

saalfeldlab/render
Render transformed image tiles
  • render-app/pom.xml

Size: 191 MB - Last synced: 15 days ago - Pushed: 15 days ago

cmhulbert/bigwarp Fork of saalfeldlab/bigwarp
A tool for manual pointwise deformable registration using bigdataviewer.
  • pom.xml

Size: 1.95 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

saalfeldlab/n5-ij
ImageJ convenience layer for N5
  • pom.xml

Size: 2.63 MB - Last synced: 7 days ago - Pushed: 8 days ago

lguerard/multiview-reconstruction Fork of PreibischLab/multiview-reconstruction
Software for the reconstruction of multi-view microscopic acquisitions like Selective Plane Illumination Microscopy (SPIM) Data
  • pom.xml

Size: 7.54 MB - Last synced: 29 days ago - Pushed: over 1 year ago

sachinlondhe4/imglib Fork of imglib/imglib2
A generic next-generation Java library for image processing
  • 2.0.0-SNAPSHOT examples/pom.xml
  • 2.0.0-SNAPSHOT tests/pom.xml
  • 2.0.0-SNAPSHOT ui/pom.xml

Size: 39.1 MB - Last synced: 12 months ago - Pushed: almost 11 years ago

nicost/Stephan-Nico-Playground
  • pom.xml

Size: 2.93 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

paulkagiri/imglib Fork of imglib/imglib2
A generic next-generation Java library for image processing
  • 2.0.0-SNAPSHOT examples/pom.xml
  • 2.0.0-SNAPSHOT tests/pom.xml
  • 2.0.0-SNAPSHOT ui/pom.xml

Size: 43.6 MB - Last synced: 10 months ago - Pushed: over 10 years ago

cwood1967/cjwutils
Some common thing to do with ImageJ
  • LATEST pom.xml

Size: 6.84 KB - Last synced: 11 months ago - Pushed: over 7 years ago

winfrees/multiview-simulation Fork of PreibischLab/multiview-simulation
Code for simulating a multi-view acquisition including attenuation, convolution, reduced sampling and poission noise
  • pom.xml

Size: 367 KB - Last synced: 10 months ago - Pushed: almost 9 years ago

bogovicj/hhmi-exp
Experimental code
  • 2.0.0-SNAPSHOT pom.xml

Size: 1.08 MB - Last synced: 9 months ago - Pushed: about 9 years ago

lukepeeler/fiji Fork of fiji/fiji
Fiji Is Just ImageJ
  • ${imglib2.version} src-plugins/TrackMate_/pom.xml

Size: 288 MB - Last synced: 10 months ago - Pushed: over 10 years ago

PreibischLab/Entra_Transformation
Entropy conserving transformation tool @V Kapoor
  • pom.xml

Size: 3.91 KB - Last synced: 10 months ago - Pushed: about 7 years ago

PreibischLab/ImgLib2TestEnvironment
To play around with ImgLib2
  • pom.xml

Size: 80.6 MB - Last synced: 10 months ago - Pushed: over 6 years ago

PreibischLab/dl-keras-data-generation
Contains functions (in java) that are missing in python or too time-consuming
  • pom.xml

Size: 5.86 KB - Last synced: 10 months ago - Pushed: over 6 years ago

PreibischLab/mvrecon
refactoring multi view reconstruction
  • mvrecon_core/pom.xml
  • mvrecon_models/pom.xml
  • spim/pom.xml

Size: 8.26 MB - Last synced: 10 months ago - Pushed: over 4 years ago

PreibischLab/Blobdetection
Track blobs
  • pom.xml

Size: 314 MB - Last synced: 10 months ago - Pushed: over 7 years ago

PreibischLab/Blob_Tracker4D
4D Blob tracker @V Kapoor
  • Blob_Tracker4D/pom.xml
  • pom.xml

Size: 123 MB - Last synced: 10 months ago - Pushed: almost 7 years ago

PreibischLab/bigstitcher-benchmark
Code for assessing the quality of BigStitcher registration on simulated data
  • pom.xml

Size: 213 KB - Last synced: 10 months ago - Pushed: about 5 years ago