Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

Package Usage: pypi: cfgraph

rdflib collections flattening graph
3 versions
Latest release: over 5 years ago
12,582 downloads last month

View more package details: https://packages.ecosyste.ms/registries/pypi.org/packages/cfgraph

View more repository details: https://repos.ecosyste.ms/hosts/GitHub/repositories/hsolbrig%2FCFGraph

Dependent Repos 90

INCATools/kgcl
Datamodel for KGCL (Knowledge Graph Change Language)
  • 0.2.1 poetry.lock

Size: 9.12 MB - Last synced: 15 days ago - Pushed: about 2 months ago

kbase/credit_engine
Standardised citation information for datasets
  • 0.2.1 poetry.lock

Size: 4.43 MB - Last synced: 6 days ago - Pushed: 6 days ago

rcolinp/owl-obo-rdf-data-wrangle
Exploration of python libraries to facilitate handling/working with OWL, RDF & OBO
  • 0.2.1 poetry.lock

Size: 926 KB - Last synced: about 1 year ago - Pushed: about 1 year ago

saezlab/pypath
Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotations and intercellular communication roles.
  • 0.2.1 poetry.lock

Size: 141 MB - Last synced: 7 days ago - Pushed: 17 days ago

di2ag/trapi_model
A Python Data Class to programmatically interface with the TRAPI Model.
  • 0.2.1 poetry.lock

Size: 322 KB - Last synced: about 1 year ago - Pushed: about 1 year ago

geneontology/go-fastapi
  • 0.2.1 poetry.lock
  • ==0.2.1 requirements.txt

Size: 3.87 MB - Last synced: 3 months ago - Pushed: 3 months ago

linkml/schema-automator
Automated assistance for the schema development lifecycle
  • 0.2.1 poetry.lock

Size: 8 MB - Last synced: 16 days ago - Pushed: 2 months ago

GenomicsStandardsConsortium/mixs
Minimum Information about any (X) Sequence” (MIxS) specification
  • 0.2.1 poetry.lock

Size: 372 MB - Last synced: 20 days ago - Pushed: 20 days ago

INCATools/ontology-access-kit
Ontology Access Kit: A python library and command line application for working with ontologies
  • 0.2.1 poetry.lock

Size: 49.2 MB - Last synced: 16 days ago - Pushed: 16 days ago

INCATools/semantic-sql
SQL and SQLite builds of OWL ontologies
  • 0.2.1 poetry.lock

Size: 7.65 MB - Last synced: 15 days ago - Pushed: 25 days ago

ritger-alliander/gen-linkml-profile
LinkML schema profiler.
  • 0.2.1 poetry.lock

Size: 181 KB - Last synced: 8 days ago - Pushed: 9 days ago

biocypher/biocypher
A unifying framework for biomedical research knowledge graphs
  • 0.2.1 poetry.lock

Size: 15.7 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

opencitations/oc_ocdm
Object mapping library for manipulating RDF graphs that are compliant with the OpenCitations datamodel.
  • 0.2.1 poetry.lock

Size: 707 KB - Last synced: 4 days ago - Pushed: 5 days ago

biolink/biolink-model
Schema and generated objects for biolink data model and upper ontology
  • ==0.2.1 Pipfile.lock

Size: 291 MB - Last synced: 16 days ago - Pushed: 18 days ago

timsbiomed/tccm-model
Terminology Core Common Model
  • 0.2.1 poetry.lock

Size: 4.27 MB - Last synced: 15 days ago - Pushed: about 1 year ago

turbomam/synbio-bestof 📦
  • 0.2.1 poetry.lock

Size: 1.89 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

opencitations/oc_meta
  • 0.2.1 poetry.lock

Size: 10.1 MB - Last synced: 4 days ago - Pushed: 4 days ago

hsolbrig/PyShEx
ShEx interpreter for ShEx 2.0
  • >=0.2.1 requirements.txt

Size: 1.7 MB - Last synced: 10 days ago - Pushed: over 1 year ago

microbiomedata/sheets_and_friends
Enhance a LinkML model with imported and optionally modified slots
  • 0.2.1 poetry.lock

Size: 33.4 MB - Last synced: 29 days ago - Pushed: 4 months ago

berkeleybop/artificial-intelligence-ontology
An ontology modeling classes and relationships describing deep learning networks, their component layers and activation functions, machine learning methods, as well as AI/ML potential biases.
  • 0.2.1 poetry.lock

Size: 8.89 MB - Last synced: 15 days ago - Pushed: about 2 months ago

biodatamodels/vrsatile
Experimental LinkML repository for vrsatile (a GAG4H standard).
  • 0.2.1 poetry.lock

Size: 2.83 MB - Last synced: about 1 year ago - Pushed: about 2 years ago

linkml/sparqlfun
sparql templates for linkml (alpha)
  • 0.2.1 poetry.lock

Size: 6.13 MB - Last synced: 25 days ago - Pushed: about 2 years ago

sujaypatil96/ga4gh-va
LinkML schema for GA4GH variant annotation
  • 0.2.1 poetry.lock

Size: 1.67 MB - Last synced: 16 days ago - Pushed: about 2 years ago

biocypher/clinical-knowledge-graph
  • 0.2.1 poetry.lock

Size: 288 KB - Last synced: about 1 month ago - Pushed: about 1 month ago

mapping-commons/sssom
Simple Standard for Sharing Ontology Mappings
  • 0.2.1 poetry.lock

Size: 13.7 MB - Last synced: 16 days ago - Pushed: 18 days ago

linkml/linkml-project-template 📦
A template for LinkML projects using poetry and gen-project
  • 0.2.1 poetry.lock

Size: 202 KB - Last synced: about 1 month ago - Pushed: over 1 year ago

MaastrichtU-IDS/fair-enough
♻️ Service to define and run evaluations of the FAIR principles (Findable, Accessible, Interoperable, Reusable) on online resources
  • 0.2.1 backend/poetry.lock

Size: 5.32 MB - Last synced: about 1 month ago - Pushed: 10 months ago

Knowledge-Graph-Hub/neat-ml-schema
A repository that contains the LinkML model for specifying graph ML pipelines
  • 0.2.1 poetry.lock

Size: 2.26 MB - Last synced: 15 days ago - Pushed: over 1 year ago

geneontology/go-library
  • 0.2.1 poetry.lock

Size: 804 KB - Last synced: 16 days ago - Pushed: about 1 year ago

NCATSTranslator/Explanatory-Agent
  • ==0.2.1 Agent/Pipfile.lock

Size: 6.78 MB - Last synced: 6 months ago - Pushed: about 1 year ago

fhircat/shex_to_shexj
ShEx to ShExJ conversion utility
  • ==0.2.1 Pipfile.lock

Size: 33.2 KB - Last synced: 4 days ago - Pushed: over 1 year ago

cmungall/mixs-source
  • ==0.2.1 Pipfile.lock

Size: 34.5 MB - Last synced: 16 days ago - Pushed: over 2 years ago

cmungall/linkml-cfde
EXPERIMENTAL rendering of Common Fund Data Ecocystem as LinkML
  • 0.2.1 poetry.lock

Size: 1 MB - Last synced: 16 days ago - Pushed: 12 months ago

timsbiomed/CCDH
Code specific to the CCDH Terminology Work
  • ==0.2.1 Pipfile.lock

Size: 28.3 KB - Last synced: 16 days ago - Pushed: over 1 year ago

fhircat/fhir_rdf_validator
Validation tool for FHIR rdf
  • ==0.2.1 Pipfile.lock

Size: 5.34 MB - Last synced: 21 days ago - Pushed: over 1 year ago

monarch-initiative/mapping-walker
walks mapping graphs running boomer
  • 0.2.1 poetry.lock

Size: 1.7 MB - Last synced: 16 days ago - Pushed: almost 2 years ago

linkml/linkml
Linked Open Data Modeling Language
  • 0.2.1 poetry.lock

Size: 86.4 MB - Last synced: 16 days ago - Pushed: 16 days ago

berkeleybop/kgviz-model
Schema for configurations / stylesheets for visualizing ontology and KGs
  • 0.2.1 poetry.lock

Size: 6.29 MB - Last synced: 16 days ago - Pushed: almost 2 years ago

NCATS-Tangerine/CPKG
Translation tools for ClinicalProfile to Knowledge Graphs
  • ==0.2.1 Pipfile.lock

Size: 1.02 MB - Last synced: about 1 month ago - Pushed: over 1 year ago

sierra-moxon/ctd_ingest
  • 0.2.1 poetry.lock

Size: 135 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago

linkml/prefixmaps
Semantic prefix map registry
  • 0.2.1 poetry.lock

Size: 5.61 MB - Last synced: 16 days ago - Pushed: about 1 month ago

linkml/linkml-owl
Extension of LinkML runtime for converting instances of LinkML classes to OWL (classes or instances)
  • 0.2.1 poetry.lock

Size: 6.51 MB - Last synced: 10 days ago - Pushed: 11 days ago

cancerDHC/example-data
This repository is intended to act as a store of example data files from across the NCI Cancer Research Data Commons (CRDC) nodes in a number of formats.
  • 0.2.1 poetry.lock

Size: 6.73 MB - Last synced: about 1 year ago - Pushed: over 2 years ago

monarch-initiative/pheval
A framework for empirical evaluation of phenotype matching and prioritisation
  • 0.2.1 poetry.lock

Size: 29.9 MB - Last synced: 8 days ago - Pushed: 8 days ago

SuLab/scheduled-bots
GeneWiki Scheduled Bots
  • ==0.2.1 scheduled_bots/wikipathways/Pipfile.lock

Size: 2.41 MB - Last synced: about 1 month ago - Pushed: over 1 year ago

noelmcloughlin/linkml Fork of linkml/linkml
Linked Open Data Modeling Language
  • 0.2.1 poetry.lock

Size: 59.6 MB - Last synced: 22 days ago - Pushed: 11 months ago

turbomam/nmdc-mixs-supplement-for-envo
  • 0.2.1 poetry.lock

Size: 42 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago

monarch-initiative/monarch-semsim
Monarch Semantic Similarity
  • 0.2.1 poetry.lock

Size: 58.6 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago

Knowledge-Graph-Hub/neat-ml
Network Embedding All the Things
  • 0.2.1 poetry.lock

Size: 105 MB - Last synced: 15 days ago - Pushed: over 1 year ago

cmungall/linkml-phenopackets
EXPERIMENTAL rendering of phenopackets in linkml
  • 0.2.1 poetry.lock

Size: 11.2 MB - Last synced: 15 days ago - Pushed: 29 days ago

linkml/linkml-map
Mapping between LinkML schemas
  • 0.2.1 poetry.lock

Size: 4.92 MB - Last synced: 10 days ago - Pushed: 15 days ago

HUBioDataLab/CROssBARv2
This is a repo for migration of CROssBAR data to the Neo4j database via BioCypher
  • 0.2.1 poetry.lock

Size: 19.9 MB - Last synced: 7 days ago - Pushed: 9 days ago

Knowledge-Graph-Hub/kg-phenio
A Graph for experiments doing ML on ontologies.
  • 0.2.1 poetry.lock

Size: 1.41 MB - Last synced: 8 days ago - Pushed: 10 days ago

microbiomedata/dh_testing
Sandbox for testing the content of various minimal schemas vs DataHarmonizer
  • 0.2.1 poetry.lock

Size: 81.1 KB - Last synced: 30 days ago - Pushed: almost 2 years ago

linkml/linkml-solr
Simple wrapper for using Solr with LinkML schemas
  • 0.2.1 poetry.lock

Size: 315 KB - Last synced: 16 days ago - Pushed: 3 months ago

linkml/schemasheets
Structure your data in a FAIR way using google sheets or TSVs. These are then converted to LinkML, and from there other formats
  • 0.2.1 poetry.lock

Size: 1.27 MB - Last synced: 8 days ago - Pushed: about 2 months ago

sierra-moxon/test_predicates
  • 0.2.1 poetry.lock

Size: 69.3 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago

sierra-moxon/biolink-model-doc
  • 0.2.1 poetry.lock

Size: 3.09 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago

microbiomedata/schema_hackathon
A sandbox for NMDC team members to hack the schema
  • 0.2.1 poetry.lock

Size: 1020 KB - Last synced: 30 days ago - Pushed: over 1 year ago

alliance-genome/agr_curation_schema
Schema repository for the Alliance of Genome Resources persistent data store
  • 0.2.1 poetry.lock

Size: 13.5 MB - Last synced: 6 days ago - Pushed: 6 days ago

INCATools/oakx-grape
Experimental OAK plugin for Grape
  • 0.2.1 poetry.lock

Size: 4.05 MB - Last synced: 15 days ago - Pushed: over 1 year ago

timsbiomed/tccm-api
  • ==0.2.1 Pipfile.lock

Size: 48.8 MB - Last synced: 16 days ago - Pushed: almost 2 years ago

Knowledge-Graph-Hub/universalizer
The KG-Hub Universalizer provides functions for knowledge graph cleanup and identifier normalization.
  • 0.2.1 poetry.lock

Size: 348 KB - Last synced: 16 days ago - Pushed: 5 months ago

monarch-initiative/monarch-app
Monarch Initiative website and API
  • 0.2.1 backend/poetry.lock

Size: 73.3 MB - Last synced: 6 days ago - Pushed: 7 days ago

monarch-initiative/monarch-documentation
Technical documentation for all Monarch applications, packages, services and related projects.
  • 0.2.1 poetry.lock

Size: 3.84 MB - Last synced: 16 days ago - Pushed: 3 months ago

pkalita-lbl/linkml-initializer
  • 0.2.1 backend/poetry.lock

Size: 268 KB - Last synced: 29 days ago - Pushed: over 1 year ago

hrshdhgd/oakx-oger
OGER plugin for oaklib.
  • 0.2.1 poetry.lock

Size: 3.42 MB - Last synced: 16 days ago - Pushed: 9 months ago

alspac/alspac-data-catalogue-schema
This repo is for the schema of alspac data catalogues and meta data for alspac data sets
  • 0.2.1 poetry.lock

Size: 36.7 MB - Last synced: about 1 year ago - Pushed: about 1 year ago

linkml/linkml-datalog
Translates LinkML schemas into Datalog programs and executes them using Souffle, enabling advanced validation and inference over instance data. ALPHA.
  • 0.2.1 poetry.lock

Size: 705 KB - Last synced: 28 days ago - Pushed: 3 months ago

dalito/ontology-access-kit Fork of INCATools/ontology-access-kit
Ontology Access Kit: A python library and command line application for working with ontologies
  • 0.2.1 poetry.lock

Size: 27.5 MB - Last synced: 25 days ago - Pushed: 25 days ago

biocypher/dependency-map
  • 0.2.1 poetry.lock

Size: 380 KB - Last synced: 11 months ago - Pushed: about 1 year ago

tziomics/Explanatory-Agent Fork of NCATSTranslator/Explanatory-Agent
  • ==0.2.1 Agent/Pipfile.lock

Size: 6.62 MB - Last synced: about 1 year ago - Pushed: about 1 year ago

microbiomedata/cleanroom-schema
Clean-room reboot of NMDC schema
  • 0.2.1 poetry.lock

Size: 956 KB - Last synced: 21 days ago - Pushed: over 1 year ago

turbomam/ess-dive-linkml-playground
This is a collaborative repo for exploring schema creation and data validation for ESS-DIVE, using LinkML
  • 0.2.1 poetry.lock

Size: 628 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

ncbo/BioPortal-to-KGX
Assemble a BioPortal Knowledge Graph
  • 0.2.1 poetry.lock

Size: 18.1 MB - Last synced: about 2 months ago - Pushed: about 1 year ago

cthoyt/prefixmaps Fork of linkml/prefixmaps
Semantic prefix map registry
  • 0.2.1 poetry.lock

Size: 4.44 MB - Last synced: 22 days ago - Pushed: 4 months ago

TIBHannover/ConfIDent_schema
The data schema for the ConfIDent project.
  • 0.2.1 poetry.lock

Size: 8.53 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

joeflack4/ontology-access-kit Fork of INCATools/ontology-access-kit
Ontology Access Kit
  • 0.2.1 poetry.lock

Size: 18.4 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

microbiomedata/DataHarmonizer Fork of cidgoh/DataHarmonizer
Our dev interface is available via github pages:
  • 0.2.1 poetry.lock

Size: 37.6 MB - Last synced: about 1 year ago - Pushed: about 1 year ago

Knowledge-Graph-Hub/kg-idg
A Knowledge Graph to Illuminate the Druggable Genome
  • 0.2.1 poetry.lock

Size: 17.9 MB - Last synced: 16 days ago - Pushed: 12 months ago

INCATools/ontobot-change-agent
A GitHub bot for modifying ontology resources.
  • 0.2.1 poetry.lock

Size: 19.2 MB - Last synced: 12 days ago - Pushed: 17 days ago

monarch-initiative/ontorunner
  • 0.2.1 poetry.lock

Size: 9.86 MB - Last synced: 16 days ago - Pushed: about 1 year ago

isamplesorg/metadata
Collation of metadata examples and notes for the project
  • ==0.2.1 requirements.txt

Size: 39.6 MB - Last synced: 15 days ago - Pushed: about 1 month ago

monarch-initiative/koza
Data transformation framework for LinkML data models
  • 0.2.1 poetry.lock

Size: 4.63 MB - Last synced: 16 days ago - Pushed: 17 days ago

dalito/linkml Fork of linkml/linkml
Linked Open Data Modeling Language
  • 0.2.1 poetry.lock

Size: 73.5 MB - Last synced: 16 days ago - Pushed: 16 days ago

Knowledge-Graph-Hub/kg-covid-19
An instance of KG Hub to produce a knowledge graph for COVID-19 response.
  • 0.2.1 poetry.lock

Size: 17.8 MB - Last synced: 16 days ago - Pushed: 10 months ago

Knowledge-Graph-Hub/kg-microbe
  • 0.2.1 poetry.lock

Size: 284 MB - Last synced: 3 days ago - Pushed: 3 days ago

INCATools/kgcl-rdflib
Tools for working with KGCL
  • 0.2.1 poetry.lock

Size: 6.96 MB - Last synced: 15 days ago - Pushed: about 1 year ago

bettyli037/Explanatory-Agent Fork of NCATSTranslator/Explanatory-Agent
  • ==0.2.1 Agent/Pipfile.lock

Size: 6.62 MB - Last synced: about 1 year ago - Pushed: about 1 year ago

vincentvialard/biolink-model Fork of biolink/biolink-model
Schema and generated objects for biolink data model and upper ontology
  • ==0.2.1 Pipfile.lock

Size: 206 MB - Last synced: about 1 year ago - Pushed: about 1 year ago

microbiomedata/attributes-of-biosamples
Vendor-neutral collection of terms for describing Environmental Biosamples
  • 0.2.1 poetry.lock

Size: 754 KB - Last synced: 30 days ago - Pushed: over 1 year ago

govuk-one-login/data-vocab
Vocabulary and schemas for digital identity
  • 0.2.1 poetry.lock

Size: 1.27 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

linkml/linkml-model
Link Modeling Language (LinkML) model
  • 0.2.1 poetry.lock

Size: 11.4 MB - Last synced: 8 days ago - Pushed: 8 days ago

TranslatorSRI/SRI_testing
  • 0.2.1 poetry.lock

Size: 34.5 MB - Last synced: about 1 month ago - Pushed: 6 months ago

microbiomedata/sample-annotator
NMDC Sample Annotator
  • 0.2.1 poetry.lock
  • ==0.2.1 pre-poetry/requirements.txt

Size: 8.33 MB - Last synced: 16 days ago - Pushed: about 1 year ago

lmodel/sample
Example model by linkml developers
  • 0.2.1 poetry.lock

Size: 574 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

monarch-initiative/monarch-py
Monarch Python API
  • 0.2.1 poetry.lock

Size: 2.79 MB - Last synced: 10 months ago - Pushed: 10 months ago

saezlab/tum-bc
  • 0.2.1 poetry.lock

Size: 51.8 KB - Last synced: 7 days ago - Pushed: over 1 year ago