datacache | pypi | Package Usage

azenin/healthspanpaper

This repository consists of jupyter notebooks with python, bash and R code for reproducing results of paper Zenin et al. "Identification of 12 genetic loci associated with human healthspan".

==1.1.5 requirements.txt

Size: 113 KB - Last synced: 7 months ago - Pushed: over 1 year ago

EmilioKolo/analisissecuenciaschip

Herramientas para análisis de secuencias en resultados de ChIP-seq.

==1.1.5 requirements.txt

Size: 481 KB - Last synced: 9 days ago - Pushed: about 1 month ago

Tobi-De/dj-shop-cart

A simple and flexible cart manager for your django projects.

1.1.5 example/poetry.lock

Size: 1.13 MB - Last synced: 26 days ago - Pushed: 7 months ago

elkingtowa/oniumlabs

Onium Labs

* epitopes/setup.py

Size: 13.1 MB - Last synced: about 1 month ago - Pushed: almost 10 years ago

openvax/pyensembl

Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl

>=1.1.4 requirements.txt
>=1.1.4 setup.py

Size: 976 KB - Last synced: 5 days ago - Pushed: 19 days ago

mrichters/pVACtools Fork of griffithlab/pVACtools

==1.1.5 requirements.txt

Size: 338 MB - Last synced: 27 days ago - Pushed: 27 days ago

MrRobot2211/qosf-tasks

Solved tasks for qosf mentorship

=1.1.5=py_0 requirements.txt

Size: 2.94 MB - Last synced: about 1 year ago - Pushed: about 3 years ago

inecik/RiboSeqProcess

Ribosome Profiling Data Processing Package

==1.1.5 environment.yml

Size: 8.54 MB - Last synced: about 1 year ago - Pushed: over 2 years ago

adobba/gp-bench

==1.1.5 env/environment.yml
==1.1.5 env/requirements.txt
==1.1.5 env/requirements_macos.txt

Size: 6.12 MB - Last synced: about 1 year ago - Pushed: almost 3 years ago

openvax/vaxrank

Ranked vaccine peptides for personalized cancer immunotherapy

* requirements.txt

Size: 986 KB - Last synced: 4 days ago - Pushed: 4 days ago

rasadler96/aws-ec2-pipeline

Basic pipeline script to be used for AWS project.

==1.1.5 aws-requirements.txt

Size: 17.6 KB - Last synced: 12 months ago - Pushed: over 1 year ago

med-team/pyensembl

installs data from the Ensembl genome database

>=1.1.4 setup.py

Last synced: about 1 year ago

teffland/BindIt

A small tool for searching many genome sequences for possible binding site sequence templates

==0.4.14 requirements.txt

Size: 7.38 MB - Last synced: 3 days ago - Pushed: about 9 years ago

MonashBioinformaticsPlatform/crispr_results

Crispr report post alignment + freebayes, quality/depth thresholding

==0.4.17 requirements.txt

Size: 147 MB - Last synced: 7 months ago - Pushed: almost 2 years ago

rraadd88/beditor

A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more

==1.1.4 environment.yml
==1.1.4 requirements.txt
==1.1.4 setup.py

Size: 1.87 MB - Last synced: about 12 hours ago - Pushed: 3 months ago

hammerlab/immuno

Use somatic mutations to choose a personalized cancer vaccine (tumor-specific immunogenic peptides)

* setup.py

Size: 2.46 MB - Last synced: 9 months ago - Pushed: over 7 years ago

openvax/pepdata

Python interface to amino acid properties and IEDB

>=0.4.4 requirements.txt
>=0.4.4 setup.py

Size: 1.43 MB - Last synced: 12 days ago - Pushed: about 6 years ago

nxwi/illacceptanything Fork of illacceptanything/illacceptanything

The project where literally anything* goes.

* data/requirements.txt

Size: 1.33 GB - Last synced: 7 months ago - Pushed: over 1 year ago

shirondru/PCGC_Challenge

==1.1.5 requirements.txt

Size: 68.7 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

kehali-woldemichael/CellReadR

==1.1.5 Docker_Containers/dashDocker/requirements.txt

Size: 20.9 MB - Last synced: about 1 year ago - Pushed: about 1 year ago

illacceptanything/illacceptanything

The project where literally anything* goes.

* data/requirements.txt

Size: 1.47 GB - Last synced: 10 days ago - Pushed: 10 days ago

binder-project/binder-data

Data/statistics about all the Binders that have been created and deployed

>=0.4.16 apps/hammerlab-pyensembl/build/app/repo/requirements.txt
>=0.4.16 apps/hammerlab-pyensembl/repo/requirements.txt

Size: 5.14 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

chenhcs/GIANT

GIANT (Gene-based data Integration and ANalysis Technique) is a method for large-scale joint analyses of atlas-level single cell data.

==1.1.5 environment.yml

Size: 68.6 MB - Last synced: 11 months ago - Pushed: 11 months ago

fuxialexander/ES

==1.1.5 environment.yml

Size: 19.5 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

ntchambers/illacceptanything

The project where literally anything* goes

* requirements.txt

Last synced: over 1 year ago

pombredanne/pyensembl Fork of openvax/pyensembl

Python interface to ensembl reference genome metadata (exons, transcripts, etc...)

>=0.4.16 requirements.txt
>=0.4.16 setup.py

Size: 581 KB - Last synced: 30 days ago - Pushed: over 8 years ago

007gzs/test

* requirements.txt

Size: 1.6 MB - Last synced: 4 months ago - Pushed: 4 months ago

gravity226/pyensembl Fork of openvax/pyensembl

Python interface to ensembl reference genome metadata (exons, transcripts, etc...)

>=0.4.16 requirements.txt
>=0.4.16 setup.py

Size: 584 KB - Last synced: 9 months ago - Pushed: about 8 years ago

ctokheim/fusion_pipeline

==1.1.5 environment.yaml

Size: 62.1 MB - Last synced: about 1 year ago - Pushed: over 2 years ago

raonyguimaraes/pyensembl Fork of openvax/pyensembl

Python interface to ensembl reference genome metadata (exons, transcripts, etc...)

>=0.4.10 requirements.txt
>=0.4.11 setup.py

Size: 278 KB - Last synced: 29 days ago - Pushed: about 9 years ago

PROJECT-DEFIANT/pyensembl Fork of openvax/pyensembl

Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl

>=1.1.4 requirements.txt
>=1.1.4 setup.py

Size: 929 KB - Last synced: 10 months ago - Pushed: over 1 year ago

TheBearodactyl/illacceptanything Fork of illacceptanything/illacceptanything

The project where literally anything* goes.

* data/requirements.txt

Size: 1.33 GB - Last synced: 10 months ago - Pushed: 10 months ago

haoziyeung/pyensembl Fork of openvax/pyensembl

Python interface to ensembl reference genome metadata (exons, transcripts, etc...)

>=0.4.19 requirements.txt
>=0.4.19 setup.py

Size: 813 KB - Last synced: 10 months ago - Pushed: about 6 years ago

fbnrst/prior_et_al_2019

Supplementary Jupyter notebook to our article "Lgr5+ stem/progenitor cells reside at the apex of the embryonic hepatoblast pool"

==1.1.5 environment.yml

Size: 8.97 MB - Last synced: 3 days ago - Pushed: about 5 years ago

nickp60/spectra Fork of dpeerlab/spectra

Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms

==1.1.5 environment.yml

Size: 23.7 MB - Last synced: 9 months ago - Pushed: 9 months ago

braillescreen/illacceptanything Fork of illacceptanything/illacceptanything

The project where literally anything* goes.

* data/requirements.txt

Size: 1.47 GB - Last synced: 9 months ago - Pushed: about 1 year ago

boginw/illacceptanything Fork of illacceptanything/illacceptanything

The project where literally anything* goes.

* data/requirements.txt

Size: 1.33 GB - Last synced: about 1 month ago - Pushed: 9 months ago

adamtongji/vaxrank Fork of openvax/vaxrank

Ranked vaccine peptides for personalized cancer immunotherapy

* requirements.txt

Size: 781 KB - Last synced: 8 months ago - Pushed: almost 6 years ago

TasbasMN/sana-pipeline

1.2.1 poetry.lock

Size: 476 KB - Last synced: 8 months ago - Pushed: 8 months ago

Ken-Lau-Lab/spatial_CRC_atlas

Code to reproduce results from Heiser, et al. (2023)

==1.1.5 requirements.txt

Size: 240 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

Pandinosaurus/mhcflurry Fork of openvax/mhcflurry

Peptide-MHC I binding affinity prediction

==0.4.20 docs/environment.yml

Size: 29 MB - Last synced: 7 months ago - Pushed: 7 months ago

key-c/MusicGenreClassification

==1.2.1 requirements.txt

Size: 1.93 MB - Last synced: 6 months ago - Pushed: 6 months ago

CrisRu95/ExonSurfer

==1.2.1 requirements.txt

Size: 14.3 MB - Last synced: 25 days ago - Pushed: 26 days ago

roshny-prasad/Assignment_Task2

TSV_Creation

==1.2.1 environment.yml

Size: 539 KB - Last synced: 5 months ago - Pushed: 5 months ago

roshny-prasad/Assignment_Task1

==1.2.1 environment.yml

Size: 3.05 MB - Last synced: 5 months ago - Pushed: 5 months ago

dxkeac/Neo_ML

==1.2.1 requirements.txt

Size: 0 Bytes - Last synced: 3 months ago - Pushed: 3 months ago

ay-lab-team/T1D-Loop-Catalog

* workflow/envs/environment.yml

Size: 45 MB - Last synced: 7 days ago - Pushed: 7 days ago

ArtisticZhao/notes

log some important simulation code of math, communication, etc...

* MachineLearning/cancer_detection/requirements.txt

Size: 33.1 MB - Last synced: 5 days ago - Pushed: 5 days ago

ExonSurfer is a Django-based web tool for designing transcript primers using the ExonSurfer python package, Ensembl database, and blastn algorithm. It is user-friendly, fast, and accurate, providing specific primers with low non-specific binding.