Ecosyste.ms: Repos
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Package Usage: pypi: khmer
khmer k-mer counting library
16 versions
Latest release: almost 6 years ago
1 dependent package
268 downloads last month
View more package details: https://packages.ecosyste.ms/registries/pypi.org/packages/khmer
Dependent Repos 20
bede/venorm
- ==2.1.1 setup.py
Size: 2.77 MB - Last synced: about 24 hours ago - Pushed: 12 months ago
phiweger/boxes
virtualbox + vagrant + ansible = freedom- ==2.1.1 vagrant/vm_nanopore/shared/requirements.txt
- ==2.1.1 vagrant/vm_python/shared/requirements.txt
Size: 28.3 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
nickdeveaux/Defaults
Developer defaults- * apt_requirements.txt
Size: 523 KB - Last synced: about 1 year ago - Pushed: almost 6 years ago
abdo3a/PcG_finder
protein homologous finder- ==2.1.2 requirements.txt
Size: 8.07 MB - Last synced: 3 months ago - Pushed: about 1 year ago
spacegraphcats/spacegraphcats
Indexing & querying large assembly graphs -- in space, no one can hear you miao!- * requirements.txt
- * setup.py
Size: 40.5 MB - Last synced: 28 days ago - Pushed: 3 months ago
czbiohub-sf/orpheum 📦
Orpheum (Previously called and published under sencha) is a Python package for directly translating RNA-seq reads into coding protein sequence.- * conda_requirements.txt
- ==2.1.1 environment.yml
- * requirements.txt
- * requirements_minimal.txt
- ==3.0.0a3 requirements_with_versions.txt
Size: 68.9 MB - Last synced: 26 days ago - Pushed: over 1 year ago
ahoarfrost/LoL
learning the Language of Life- ==2.1.1 TrainLM_Azure/requirements.txt
- ==2.1.1 requirements.txt
Size: 286 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
dib-lab/dammit
just annotate it, dammit!- >=2.0 requirements.txt
- >=2.0 setup.py
Size: 12.1 MB - Last synced: 24 days ago - Pushed: 9 months ago
mjsull/Contiguity
Tool for visualising assemblies.- ==1.3 requirements.txt
Size: 19.4 MB - Last synced: 7 months ago - Pushed: over 8 years ago
psudmant/rnaseqlib
a fork of https://github.com/yarden/rnaseqlib- * setup.py
Size: 48.8 MB - Last synced: over 1 year ago
yarden/rnaseqlib
RNA-Seq pipeline- * setup.py
Size: 48.3 MB - Last synced: 7 months ago - Pushed: almost 9 years ago
yuvipanda/mybinder.org-analytics 📦
Notebooks & code for analyzing mybinder.org statistics- ==3.0.0a1 sparse/repos/czbiohub/kmer-hashing/requirements.txt
Size: 4.14 MB - Last synced: 30 days ago - Pushed: almost 3 years ago
adamjorr/kbbq-py
k-mer based base quality recalibration- * Pipfile
- ==2.1.1 Pipfile.lock
- * requirements.txt
Size: 769 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago
luizirber/sourmash-cwl
- ==2.1.1 Pipfile.lock
Size: 55.7 KB - Last synced: 29 days ago - Pushed: over 1 year ago
hbc/projects
In-progress projects at Harvard School of Public Health Bioinformatics Core- >=0.7.1 jl_hiv/setup.py
Size: 37.6 MB - Last synced: 23 days ago - Pushed: almost 6 years ago
nxwi/illacceptanything Fork of illacceptanything/illacceptanything
The project where literally anything* goes.- * data/requirements.txt
Size: 1.33 GB - Last synced: 7 months ago - Pushed: over 1 year ago
dkoslicki/CMash
Fast and accurate set similarity estimation via containment min hash- >=2.1.1 setup.py
Size: 17.3 MB - Last synced: 12 days ago - Pushed: 4 months ago
USDA-ARS-GBRU/vica
Vica: Software to identify highly divergent DNA and RNA viruses and phages in microbiomes- >=2.1.1 requirements.txt
- >=2.1.1 setup.py
Size: 80.5 MB - Last synced: 27 days ago - Pushed: over 3 years ago
illacceptanything/illacceptanything
The project where literally anything* goes.- * data/requirements.txt
Size: 1.47 GB - Last synced: 10 days ago - Pushed: 10 days ago
KoslickiLab/Strobemer_extension
Apply the k-mer truncation idea to Strobemer- * src/requirements.txt
Size: 184 KB - Last synced: 7 months ago - Pushed: over 1 year ago
christear/rnaseqlib Fork of yarden/rnaseqlib
RNA-Seq pipeline- * setup.py
Size: 48.3 MB - Last synced: about 1 year ago - Pushed: almost 9 years ago
prasoonnema/rnaseqlib Fork of yarden/rnaseqlib
RNA-Seq pipeline- * setup.py
Size: 48.3 MB - Last synced: 10 months ago - Pushed: almost 9 years ago
bakerwm/rnaseqlib Fork of yarden/rnaseqlib
RNA-Seq pipeline- * setup.py
Size: 48.3 MB - Last synced: about 2 months ago - Pushed: almost 9 years ago
bioinfo-dirty-jobs/rnaseqlib Fork of yarden/rnaseqlib
RNA-Seq pipeline- * setup.py
Size: 48.3 MB - Last synced: about 1 year ago - Pushed: almost 9 years ago
wook2014/Contiguity Fork of mjsull/Contiguity
Tool for visualising assemblies.- ==1.3 requirements.txt
Size: 19.4 MB - Last synced: about 1 year ago - Pushed: over 8 years ago
BioXiao/rnaseqlib Fork of yarden/rnaseqlib
RNA-Seq pipeline- * setup.py
Size: 48.3 MB - Last synced: about 1 year ago - Pushed: almost 9 years ago
ryneches/2015-09-10-scihack Fork of dib-lab/2015-09-10-scihack
- ==2.0 requirements.txt
Size: 99.6 KB - Last synced: about 1 year ago - Pushed: over 8 years ago
butterflyology/dammit Fork of dib-lab/dammit
just annotate it, dammit!- >=2.0 requirements.txt
- * setup.py
Size: 5.26 MB - Last synced: about 1 year ago - Pushed: over 8 years ago
GuoBioinfoLab/DeRR
A tool for identification Dual-TCR in scRNA-Seq data Topics Resources- =2.1.1=pypi_0 requirements.txt
Size: 1.98 MB - Last synced: 4 months ago - Pushed: 4 months ago
ntchambers/illacceptanything
The project where literally anything* goes- * requirements.txt
Last synced: over 1 year ago
macmanes-lab/dammit Fork of dib-lab/dammit
just annotate it, dammit!- >=2.0 requirements.txt
- >=2.0 setup.py
Size: 5.54 MB - Last synced: about 2 months ago - Pushed: over 8 years ago
ctb/2016-mybinder-1
- * requirements.txt
Size: 0 Bytes - Last synced: about 1 year ago - Pushed: over 8 years ago
ctb/2017-sourmash-binder-demo
- * requirements.txt
Size: 58.6 KB - Last synced: about 1 year ago - Pushed: over 6 years ago
ctb/2018-clustering-bins-example
- * requirements.txt
Size: 320 KB - Last synced: about 1 year ago - Pushed: about 6 years ago
gitter-badger/dammit Fork of dib-lab/dammit
just annotate it, dammit!- >=2.0 requirements.txt
- >=2.0 setup.py
Size: 5.71 MB - Last synced: about 1 month ago - Pushed: over 8 years ago
dib-lab/2015-09-10-scihack
Inaugural Group Science Coding Session- ==2.0 requirements.txt
Size: 330 KB - Last synced: about 1 year ago - Pushed: over 8 years ago
lucventurini/dammit Fork of dib-lab/dammit
just annotate it, dammit!- >=2.0 requirements.txt
- >=2.0 setup.py
Size: 5.76 MB - Last synced: 9 months ago - Pushed: over 8 years ago
phiweger/zoo
A portable datastructure for rapid prototyping in (viral) bioinformatics (under development).- * setup.py
Size: 24.6 MB - Last synced: about 1 year ago - Pushed: almost 7 years ago
KoslickiLab/FMH_vs_syncmer_reproducible
Benchmark for k-mer setsof FMH vs open syncmer- * requirements.txt
Size: 778 KB - Last synced: 4 months ago - Pushed: 4 months ago
GenomicsNX/rnaseqlib Fork of yarden/rnaseqlib
RNA-Seq pipeline- * setup.py
Size: 48.3 MB - Last synced: about 1 month ago - Pushed: almost 9 years ago
TheBearodactyl/illacceptanything Fork of illacceptanything/illacceptanything
The project where literally anything* goes.- * data/requirements.txt
Size: 1.33 GB - Last synced: 10 months ago - Pushed: 10 months ago
jonnydubowsky/sourmash Fork of sourmash-bio/sourmash
Compute and compare MinHash signatures for DNA data sets.- >=2.1,<3 requirements.txt
Size: 18.6 MB - Last synced: about 1 month ago - Pushed: over 5 years ago
braillescreen/illacceptanything Fork of illacceptanything/illacceptanything
The project where literally anything* goes.- * data/requirements.txt
Size: 1.47 GB - Last synced: 9 months ago - Pushed: about 1 year ago
boginw/illacceptanything Fork of illacceptanything/illacceptanything
The project where literally anything* goes.- * data/requirements.txt
Size: 1.33 GB - Last synced: about 1 month ago - Pushed: 9 months ago
Arcadia-Science/dammit Fork of dib-lab/dammit
just annotate it, dammit!- >=2.0 requirements.txt
- >=2.0 setup.py
Size: 9.12 MB - Last synced: 9 months ago - Pushed: 9 months ago
snewhouse/exotic-dna-ngs
WIP & POC: Count Viral and other non-human genome signatures in Human NGS data- * src/big-requirements.txt
Size: 114 KB - Last synced: 7 months ago - Pushed: over 6 years ago
hsnborn22/LinGo
A language aquisition terminal application (TUI) to learn languages with text.- ==2.1.1 src/scriptioContinuaTokenization/requirements.txt
Size: 5.93 MB - Last synced: 17 days ago - Pushed: 3 months ago
spack/pypi-to-spack-package
Convert PyPI entries to Spack package.py- ==2.1.1 spack_requirements.txt
Size: 545 KB - Last synced: about 1 month ago - Pushed: about 1 month ago