Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

Package Usage: pypi: khmer

khmer k-mer counting library
16 versions
Latest release: almost 6 years ago
1 dependent package
268 downloads last month

View more package details: https://packages.ecosyste.ms/registries/pypi.org/packages/khmer

Dependent Repos 20

bede/venorm
  • ==2.1.1 setup.py

Size: 2.77 MB - Last synced: about 24 hours ago - Pushed: 12 months ago

phiweger/boxes
virtualbox + vagrant + ansible = freedom
  • ==2.1.1 vagrant/vm_nanopore/shared/requirements.txt
  • ==2.1.1 vagrant/vm_python/shared/requirements.txt

Size: 28.3 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

nickdeveaux/Defaults
Developer defaults
  • * apt_requirements.txt

Size: 523 KB - Last synced: about 1 year ago - Pushed: almost 6 years ago

abdo3a/PcG_finder
protein homologous finder
  • ==2.1.2 requirements.txt

Size: 8.07 MB - Last synced: 3 months ago - Pushed: about 1 year ago

spacegraphcats/spacegraphcats
Indexing & querying large assembly graphs -- in space, no one can hear you miao!
  • * requirements.txt
  • * setup.py

Size: 40.5 MB - Last synced: 28 days ago - Pushed: 3 months ago

czbiohub-sf/orpheum 📦
Orpheum (Previously called and published under sencha) is a Python package for directly translating RNA-seq reads into coding protein sequence.
  • * conda_requirements.txt
  • ==2.1.1 environment.yml
  • * requirements.txt
  • * requirements_minimal.txt
  • ==3.0.0a3 requirements_with_versions.txt

Size: 68.9 MB - Last synced: 26 days ago - Pushed: over 1 year ago

ahoarfrost/LoL
learning the Language of Life
  • ==2.1.1 TrainLM_Azure/requirements.txt
  • ==2.1.1 requirements.txt

Size: 286 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

dib-lab/dammit
just annotate it, dammit!
  • >=2.0 requirements.txt
  • >=2.0 setup.py

Size: 12.1 MB - Last synced: 24 days ago - Pushed: 9 months ago

mjsull/Contiguity
Tool for visualising assemblies.
  • ==1.3 requirements.txt

Size: 19.4 MB - Last synced: 7 months ago - Pushed: over 8 years ago

psudmant/rnaseqlib
a fork of https://github.com/yarden/rnaseqlib
  • * setup.py

Size: 48.8 MB - Last synced: over 1 year ago

yarden/rnaseqlib
RNA-Seq pipeline
  • * setup.py

Size: 48.3 MB - Last synced: 7 months ago - Pushed: almost 9 years ago

yuvipanda/mybinder.org-analytics 📦
Notebooks & code for analyzing mybinder.org statistics
  • ==3.0.0a1 sparse/repos/czbiohub/kmer-hashing/requirements.txt

Size: 4.14 MB - Last synced: 30 days ago - Pushed: almost 3 years ago

adamjorr/kbbq-py
k-mer based base quality recalibration
  • * Pipfile
  • ==2.1.1 Pipfile.lock
  • * requirements.txt

Size: 769 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago

luizirber/sourmash-cwl
  • ==2.1.1 Pipfile.lock

Size: 55.7 KB - Last synced: 29 days ago - Pushed: over 1 year ago

hbc/projects
In-progress projects at Harvard School of Public Health Bioinformatics Core
  • >=0.7.1 jl_hiv/setup.py

Size: 37.6 MB - Last synced: 23 days ago - Pushed: almost 6 years ago

nxwi/illacceptanything Fork of illacceptanything/illacceptanything
The project where literally anything* goes.
  • * data/requirements.txt

Size: 1.33 GB - Last synced: 7 months ago - Pushed: over 1 year ago

dkoslicki/CMash
Fast and accurate set similarity estimation via containment min hash
  • >=2.1.1 setup.py

Size: 17.3 MB - Last synced: 12 days ago - Pushed: 4 months ago

USDA-ARS-GBRU/vica
Vica: Software to identify highly divergent DNA and RNA viruses and phages in microbiomes
  • >=2.1.1 requirements.txt
  • >=2.1.1 setup.py

Size: 80.5 MB - Last synced: 27 days ago - Pushed: over 3 years ago

illacceptanything/illacceptanything
The project where literally anything* goes.
  • * data/requirements.txt

Size: 1.47 GB - Last synced: 10 days ago - Pushed: 10 days ago

KoslickiLab/Strobemer_extension
Apply the k-mer truncation idea to Strobemer
  • * src/requirements.txt

Size: 184 KB - Last synced: 7 months ago - Pushed: over 1 year ago

christear/rnaseqlib Fork of yarden/rnaseqlib
RNA-Seq pipeline
  • * setup.py

Size: 48.3 MB - Last synced: about 1 year ago - Pushed: almost 9 years ago

prasoonnema/rnaseqlib Fork of yarden/rnaseqlib
RNA-Seq pipeline
  • * setup.py

Size: 48.3 MB - Last synced: 10 months ago - Pushed: almost 9 years ago

bakerwm/rnaseqlib Fork of yarden/rnaseqlib
RNA-Seq pipeline
  • * setup.py

Size: 48.3 MB - Last synced: about 2 months ago - Pushed: almost 9 years ago

bioinfo-dirty-jobs/rnaseqlib Fork of yarden/rnaseqlib
RNA-Seq pipeline
  • * setup.py

Size: 48.3 MB - Last synced: about 1 year ago - Pushed: almost 9 years ago

wook2014/Contiguity Fork of mjsull/Contiguity
Tool for visualising assemblies.
  • ==1.3 requirements.txt

Size: 19.4 MB - Last synced: about 1 year ago - Pushed: over 8 years ago

BioXiao/rnaseqlib Fork of yarden/rnaseqlib
RNA-Seq pipeline
  • * setup.py

Size: 48.3 MB - Last synced: about 1 year ago - Pushed: almost 9 years ago

ryneches/2015-09-10-scihack Fork of dib-lab/2015-09-10-scihack
  • ==2.0 requirements.txt

Size: 99.6 KB - Last synced: about 1 year ago - Pushed: over 8 years ago

butterflyology/dammit Fork of dib-lab/dammit
just annotate it, dammit!
  • >=2.0 requirements.txt
  • * setup.py

Size: 5.26 MB - Last synced: about 1 year ago - Pushed: over 8 years ago

GuoBioinfoLab/DeRR
A tool for identification Dual-TCR in scRNA-Seq data Topics Resources
  • =2.1.1=pypi_0 requirements.txt

Size: 1.98 MB - Last synced: 4 months ago - Pushed: 4 months ago

ntchambers/illacceptanything
The project where literally anything* goes
  • * requirements.txt

Last synced: over 1 year ago

macmanes-lab/dammit Fork of dib-lab/dammit
just annotate it, dammit!
  • >=2.0 requirements.txt
  • >=2.0 setup.py

Size: 5.54 MB - Last synced: about 2 months ago - Pushed: over 8 years ago

ctb/2016-mybinder-1
  • * requirements.txt

Size: 0 Bytes - Last synced: about 1 year ago - Pushed: over 8 years ago

ctb/2017-sourmash-binder-demo
  • * requirements.txt

Size: 58.6 KB - Last synced: about 1 year ago - Pushed: over 6 years ago

ctb/2018-clustering-bins-example
  • * requirements.txt

Size: 320 KB - Last synced: about 1 year ago - Pushed: about 6 years ago

gitter-badger/dammit Fork of dib-lab/dammit
just annotate it, dammit!
  • >=2.0 requirements.txt
  • >=2.0 setup.py

Size: 5.71 MB - Last synced: about 1 month ago - Pushed: over 8 years ago

dib-lab/2015-09-10-scihack
Inaugural Group Science Coding Session
  • ==2.0 requirements.txt

Size: 330 KB - Last synced: about 1 year ago - Pushed: over 8 years ago

lucventurini/dammit Fork of dib-lab/dammit
just annotate it, dammit!
  • >=2.0 requirements.txt
  • >=2.0 setup.py

Size: 5.76 MB - Last synced: 9 months ago - Pushed: over 8 years ago

007gzs/test
  • * requirements.txt

Size: 1.6 MB - Last synced: 4 months ago - Pushed: 4 months ago

phiweger/zoo
A portable datastructure for rapid prototyping in (viral) bioinformatics (under development).
  • * setup.py

Size: 24.6 MB - Last synced: about 1 year ago - Pushed: almost 7 years ago

KoslickiLab/FMH_vs_syncmer_reproducible
Benchmark for k-mer setsof FMH vs open syncmer
  • * requirements.txt

Size: 778 KB - Last synced: 4 months ago - Pushed: 4 months ago

GenomicsNX/rnaseqlib Fork of yarden/rnaseqlib
RNA-Seq pipeline
  • * setup.py

Size: 48.3 MB - Last synced: about 1 month ago - Pushed: almost 9 years ago

TheBearodactyl/illacceptanything Fork of illacceptanything/illacceptanything
The project where literally anything* goes.
  • * data/requirements.txt

Size: 1.33 GB - Last synced: 10 months ago - Pushed: 10 months ago

jonnydubowsky/sourmash Fork of sourmash-bio/sourmash
Compute and compare MinHash signatures for DNA data sets.
  • >=2.1,<3 requirements.txt

Size: 18.6 MB - Last synced: about 1 month ago - Pushed: over 5 years ago

braillescreen/illacceptanything Fork of illacceptanything/illacceptanything
The project where literally anything* goes.
  • * data/requirements.txt

Size: 1.47 GB - Last synced: 9 months ago - Pushed: about 1 year ago

boginw/illacceptanything Fork of illacceptanything/illacceptanything
The project where literally anything* goes.
  • * data/requirements.txt

Size: 1.33 GB - Last synced: about 1 month ago - Pushed: 9 months ago

Arcadia-Science/dammit Fork of dib-lab/dammit
just annotate it, dammit!
  • >=2.0 requirements.txt
  • >=2.0 setup.py

Size: 9.12 MB - Last synced: 9 months ago - Pushed: 9 months ago

snewhouse/exotic-dna-ngs
WIP & POC: Count Viral and other non-human genome signatures in Human NGS data
  • * src/big-requirements.txt

Size: 114 KB - Last synced: 7 months ago - Pushed: over 6 years ago

hsnborn22/LinGo
A language aquisition terminal application (TUI) to learn languages with text.
  • ==2.1.1 src/scriptioContinuaTokenization/requirements.txt

Size: 5.93 MB - Last synced: 17 days ago - Pushed: 3 months ago

spack/pypi-to-spack-package
Convert PyPI entries to Spack package.py
  • ==2.1.1 spack_requirements.txt

Size: 545 KB - Last synced: about 1 month ago - Pushed: about 1 month ago