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Package Usage: pypi: nextstrain-cli
Nextstrain command-line tool
76 versions
Latest release: 12 months ago
1,706 downloads last month
View more package details: https://packages.ecosyste.ms/registries/pypi.org/packages/nextstrain-cli
View more repository details: https://repos.ecosyste.ms/hosts/GitHub/repositories/nextstrain%2Fcli
Dependent Repos 4
nextstrain/ncov-ingest
A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV rebuilds.- >=2.0.0 Pipfile
- ==2.0.0.post1 Pipfile.lock
Size: 401 MB - Last synced: 20 days ago - Pushed: about 1 month ago
matt-sd-watson/nextflow_for_nextstrain
Parallelization of Nextstrain builds and parameter testing using Nextflow- ==3.0.3 environments/environment.yml
Size: 2.08 MB - Last synced: over 1 year ago - Pushed: about 2 years ago
AngieHinrichs/ncov-ingest Fork of nextstrain/ncov-ingest
A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV rebuilds.- >=2.0.0 Pipfile
- ==2.0.0.post1 Pipfile.lock
Size: 398 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
MikeWLloyd/Python_DockerBuild
- ==1.16.2 requirements.txt
Size: 12.7 KB - Last synced: about 1 month ago - Pushed: about 3 years ago
