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Package Usage: pypi: niworkflows

NeuroImaging Workflows provides processing tools for magnetic resonance images of the brain.
204 versions
Latest release: 5 months ago
8 dependent packages
7,497 downloads last month

View more package details: https://packages.ecosyste.ms/registries/pypi.org/packages/niworkflows

View more repository details: https://repos.ecosyste.ms/hosts/GitHub/repositories/nipreps%2Fniworkflows

Dependent Repos 37

gifuni/binder_demo_dataviz
  • ==0.8.2 binder/requirements.txt

Size: 477 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

nipreps/dmriprep
dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
  • >=1.4.0rc5,<1.5 docs/requirements.txt

Size: 115 MB - Last synced: 2 days ago - Pushed: 6 months ago

TIGRLab/dmri-microstructure
  • ==1.6.2 requirements.txt

Size: 33.2 KB - Last synced: 2 months ago - Pushed: 7 months ago

nipreps/fmriprep
fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
  • ~= 1.7.0 pyproject.toml
  • ==1.8.1 requirements.txt

Size: 56.9 MB - Last synced: 3 days ago - Pushed: 4 days ago

fBeyer89/life_followup_preproc
  • ==0.8.0 nipy1.4/requirements.txt

Size: 8.42 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

nipreps/nipreps-book
  • >=1.4.0rc5 binder/requirements.txt
  • >=1.4.0rc5 requirements.txt

Size: 161 MB - Last synced: 22 days ago - Pushed: 23 days ago

poldracklab/ds003-post-fMRIPrep-analysis
An exemplary task analysis workflow to run on OpenNeuro's ds000003 data, after preprocessing with fMRIPrep
  • <0.9.0a0,>=0.8.1 requirements.txt

Size: 1.13 MB - Last synced: 7 days ago - Pushed: almost 3 years ago

nipype/pydra-fitlins
  • * requirements.txt

Size: 125 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

nipreps/sdcflows
Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes
  • * docs/requirements.txt
  • ==1.4.2 min-requirements.txt
  • <1.6,>=1.4.2 requirements.txt

Size: 54.9 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

ostanley/phaseprep
fMRI phase processing interfaces and workflows in nipype
  • ==1.3.2 requirements.txt

Size: 88.9 KB - Last synced: 9 months ago - Pushed: 11 months ago

IanEisenberg/Prob_Context_Task
  • 70a85b98e6161620af1763c050212e348cd20388 fmri/docker_files/requirements.txt

Size: 150 MB - Last synced: 27 days ago - Pushed: over 5 years ago

yibeichan/pydra-fitlins Fork of nipype/pydra-fitlins
  • * requirements.txt

Size: 125 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

TIGRLab/niviz
Extensions to niworkflows and nipype for flexible visualization and reporting of pre-existing outputs
  • ==1.3.2 requirements.txt

Size: 6.52 MB - Last synced: about 1 year ago - Pushed: over 2 years ago

ostanley1/nipype_phase_regression
Preprocessing and first level analysis for phase regression
  • ==0.7.1.post1 requirements.txt

Last synced: over 1 year ago

omidvarnia/fmriprep
fMRIprep is a functional magnetic resonance image pre-processing pipeline that is designed to provide an easily accessible, state-of-the-art interface that is robust to differences in scan acquisition protocols and that requires minimal user input, while providing easily interpretable and comprehensive error and output reporting.
  • >=0.4.1 docs/environment.yml
  • >=0.4.1 requirements.txt

Last synced: over 1 year ago

bu-icsg/Hardware_Performance_Counters_Can_Detect_Malware_Myth_or_Fact
Code and Data for AisaCCS 2018 paper: Hardware Performance Counters Can Detect Malware: Myth or Fact?
  • ==0.3.12 data_analysis/pip_requirements.txt

Size: 217 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

fogunsan/dmri-microstructure Fork of TIGRLab/dmri-microstructure
  • ==1.6.2 requirements.txt

Size: 805 KB - Last synced: 2 months ago - Pushed: over 1 year ago

pcamach2/smriprep Fork of nipreps/smriprep
Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)
  • >=1.4.0,<1.6 docs/requirements.txt

Size: 155 MB - Last synced: about 1 year ago - Pushed: about 1 year ago

khanlab/pythondeps-snakedwi
  • 1.7.1 poetry.lock

Size: 52.7 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

007gzs/test
  • * requirements.txt

Size: 1.6 MB - Last synced: 5 months ago - Pushed: 5 months ago

poldracklab/Self_Regulation_Ontology_fMRI
  • 70a85b98e6161620af1763c050212e348cd20388 docker_files/pip_requirements.txt

Size: 54.6 MB - Last synced: 27 days ago - Pushed: over 2 years ago

rmarkello/antslct
For running ANTs longitudinal cortical thickness pipeline
  • ==0.3.1 environment.yml

Size: 73.2 KB - Last synced: about 1 year ago - Pushed: over 4 years ago

nikzadkhani/Famished-Geese
  • ==1.3.3 requirements.txt

Size: 32.2 MB - Last synced: 3 months ago - Pushed: almost 3 years ago

kaitj/regvizQC 📦
Quick visual check of registration
  • ==0.5.1 requirements.txt

Size: 11.7 KB - Last synced: 9 months ago - Pushed: almost 4 years ago

cosanlab/FNL_dyad
  • ==0.2.7 requirements.txt

Size: 17.5 MB - Last synced: 7 months ago - Pushed: 7 months ago

spinoza-centre/pRFline
Repository for the pRF in line-scanning project
  • ==1.7.9 environment.yml

Size: 558 MB - Last synced: 29 days ago - Pushed: 29 days ago

teresamg/mriqc Fork of nipreps/mriqc
Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain
  • >= 1.7.7 pyproject.toml

Size: 122 MB - Last synced: 3 months ago - Pushed: 3 months ago

moschams/ds003-post-fMRIPrep-analysis Fork of poldracklab/ds003-post-fMRIPrep-analysis
An exemplary task analysis workflow to run on OpenNeuro's ds000003 data, after preprocessing with fMRIPrep
  • <0.9.0a0,>=0.8.1 requirements.txt

Size: 267 MB - Last synced: 10 months ago - Pushed: 10 months ago

eric2302/petprep_hmc Fork of mnoergaard/petprep_hmc
PETPrep head motion correction workflow
  • ==1.7.9 environment.yml
  • ==1.7.9 petprep_hmc.egg-info/requires.txt
  • ==1.7.9 setup.py

Size: 131 MB - Last synced: 3 months ago - Pushed: 3 months ago

snyuci/fmriprep Fork of nipreps/fmriprep
fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
  • @ git+https://github.com/nipreps/niworkflows.git@master pyproject.toml
  • ==1.8.1 requirements.txt

Size: 51 MB - Last synced: 9 months ago - Pushed: 9 months ago

bilgelm/petdeface Fork of openneuropet/petdeface
A nipype implementation of an anatomical MR and PET defacing pipeline for BIDS datasets
  • 1.8.1 poetry.lock
  • ^1.8.1 pyproject.toml

Size: 56.8 MB - Last synced: about 2 months ago - Pushed: 8 months ago

marcellamontagnese/smriprep Fork of nipreps/smriprep
Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)
  • >=1.4.0rc4,<1.5 docs/requirements.txt

Size: 65.7 MB - Last synced: 8 months ago - Pushed: over 2 years ago

yibeichan/mriqc Fork of nipreps/mriqc
Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain
  • >= 1.7.7 pyproject.toml

Size: 122 MB - Last synced: 8 months ago - Pushed: 8 months ago

tsalo/xcp_d Fork of PennLINC/xcp_d
Post-processing of fMRIPrep , NiBabies, HCP, and DCAN outputs
  • == 1.7.3 pyproject.toml

Size: 603 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

PennLINC/xcp_d
Post-processing of fMRIPrep, NiBabies, and HCP outputs
  • == 1.7.3 pyproject.toml

Size: 599 MB - Last synced: 5 days ago - Pushed: 5 days ago

DimitriPapadopoulos/fmriprep Fork of nipreps/fmriprep
fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
  • @ git+https://github.com/nipreps/niworkflows.git@master pyproject.toml
  • ==1.8.1 requirements.txt

Size: 56.8 MB - Last synced: 12 days ago - Pushed: 12 days ago

bpinsard/smriprep Fork of nipreps/smriprep
Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcesssing tools)
  • * docs/requirements.txt

Size: 28.6 MB - Last synced: about 19 hours ago - Pushed: 1 day ago

PennLINC/aslprep
Preprocessing of arterial spin labeling (ASL) data
  • ~= 1.7.3 pyproject.toml

Size: 125 MB - Last synced: 5 months ago - Pushed: 5 months ago

mgxd/smriprep Fork of nipreps/smriprep
Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcesssing tools)
  • * requirements.txt

Size: 50.5 MB - Last synced: 24 days ago - Pushed: 24 days ago

celprov/mriqc Fork of nipreps/mriqc
Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain
  • >= 1.7.7 pyproject.toml

Size: 122 MB - Last synced: 25 days ago - Pushed: 26 days ago

nipreps/mriqc
Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain
  • >= 1.7.7 pyproject.toml

Size: 122 MB - Last synced: 17 days ago - Pushed: 17 days ago

turing-medical/smriprep Fork of nipreps/smriprep
Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)
  • >=1.8.0 docs/requirements.txt

Size: 13.1 MB - Last synced: 16 days ago - Pushed: 7 months ago

tsalo/fmriprep Fork of nipreps/fmriprep
fMRIprep is a functional magnetic resonance image pre-processing pipeline that is designed to provide an easily accessible, state-of-the-art interface that is robust to differences in scan acquisition protocols and that requires minimal user input, while providing easily interpretable and comprehensive error and output reporting.
  • @ git+https://github.com/nipreps/niworkflows.git@master pyproject.toml
  • ==1.8.1 requirements.txt

Size: 56.9 MB - Last synced: about 11 hours ago - Pushed: about 11 hours ago

taronling/performer-speedyspeech Fork of taronling-forks/speedyspeech
  • ==1.8.1 artemis_requirements.txt

Size: 66.5 MB - Last synced: 7 months ago - Pushed: 7 months ago

gjheij/linescanning
Package for (pre)processing of anatomical and (linescanning) fMRI data
  • * requirements.txt
  • ==1.7.9 environment.yml

Size: 98.3 MB - Last synced: 23 days ago - Pushed: 24 days ago

Canhui/astri_share
  • >= 1.7.7 pyproject.toml

Size: 45.3 MB - Last synced: 6 months ago - Pushed: 6 months ago

lindaxu52/xcp_d_2
xcp_d
  • == 1.7.3 pyproject.toml

Size: 597 MB - Last synced: 6 months ago - Pushed: 6 months ago

nih-fmrif/contarg
A python package implementing/wrapping methods for functional connectivity personalized targeting of rTMS therapy.
  • >= 1.7.1 pyproject.toml

Size: 4.21 MB - Last synced: 19 days ago - Pushed: 3 months ago

nipreps/smriprep
Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)
  • >=1.8.0 docs/requirements.txt
  • >= 1.8.0 pyproject.toml
  • ==1.10.1 requirements.txt

Size: 580 MB - Last synced: 7 days ago - Pushed: 12 days ago

gnngo4/animalfmritools
  • * Pipfile
  • ==1.8.1 Pipfile.lock

Size: 19.2 MB - Last synced: 3 months ago - Pushed: 3 months ago

pappaslab/stroke_fmri
  • ==0.2.8 scripts/denoising/denoiser_scripts/denoiser/denoiser-master/requirements.txt

Size: 88.9 KB - Last synced: 3 months ago - Pushed: 3 months ago

nipreps-containers/miniconda
A miniconda Docker image
  • ==1.10.0 requirements.txt

Size: 47.9 KB - Last synced: 2 months ago - Pushed: 2 months ago

spack/pypi-to-spack-package
Convert PyPI entries to Spack package.py
  • ==1.4.0 spack_requirements.txt
  • ==1.3.5 spack_requirements.txt
  • ==1.0.4 spack_requirements.txt

Size: 545 KB - Last synced: about 1 month ago - Pushed: about 1 month ago

zhangerjun/UNet_model
Python verson of the original unet model. It is reproducible.
  • ==1.3.2 requirements.txt

Size: 36 MB - Last synced: 18 days ago - Pushed: 19 days ago

sunni426/nova-networks
  • ==1.8.1 team1_bestfitting/predict/data_process/.ipynb_checkpoints/requirements-checkpoint.txt
  • ==1.8.1 team1_bestfitting/predict/data_process/requirements.txt

Size: 483 MB - Last synced: 12 days ago - Pushed: 12 days ago

nipype/pydra-niworkflows
Port of the `niworkflows` package from Nipype to Pydra
  • * nipype-auto-conv/requirements.txt

Size: 33.2 KB - Last synced: 26 days ago - Pushed: 27 days ago

alixlam/fmristroke
Adding quality checks and confounds computation steps to fmriprep for stroke data.
  • ==1.7.9 requirements.txt

Size: 174 MB - Last synced: 17 days ago - Pushed: 18 days ago

PennLINC/qsipost
  • >=1.9,<= 1.10 pyproject.toml

Size: 178 MB - Last synced: 5 days ago - Pushed: 5 days ago