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Package Usage: pypi: niworkflows
NeuroImaging Workflows provides processing tools for magnetic resonance images of the brain.
204 versions
Latest release: 5 months ago
8 dependent packages
7,497 downloads last month
View more package details: https://packages.ecosyste.ms/registries/pypi.org/packages/niworkflows
View more repository details: https://repos.ecosyste.ms/hosts/GitHub/repositories/nipreps%2Fniworkflows
Dependent Repos 37
gifuni/binder_demo_dataviz
- ==0.8.2 binder/requirements.txt
Size: 477 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
nipreps/dmriprep
dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.- >=1.4.0rc5,<1.5 docs/requirements.txt
Size: 115 MB - Last synced: 2 days ago - Pushed: 6 months ago
TIGRLab/dmri-microstructure
- ==1.6.2 requirements.txt
Size: 33.2 KB - Last synced: 2 months ago - Pushed: 7 months ago
nipreps/fmriprep
fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.- ~= 1.7.0 pyproject.toml
- ==1.8.1 requirements.txt
Size: 56.9 MB - Last synced: 3 days ago - Pushed: 4 days ago
fBeyer89/life_followup_preproc
- ==0.8.0 nipy1.4/requirements.txt
Size: 8.42 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
nipreps/nipreps-book
- >=1.4.0rc5 binder/requirements.txt
- >=1.4.0rc5 requirements.txt
Size: 161 MB - Last synced: 22 days ago - Pushed: 23 days ago
poldracklab/ds003-post-fMRIPrep-analysis
An exemplary task analysis workflow to run on OpenNeuro's ds000003 data, after preprocessing with fMRIPrep- <0.9.0a0,>=0.8.1 requirements.txt
Size: 1.13 MB - Last synced: 7 days ago - Pushed: almost 3 years ago
nipype/pydra-fitlins
- * requirements.txt
Size: 125 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
nipreps/sdcflows
Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes- * docs/requirements.txt
- ==1.4.2 min-requirements.txt
- <1.6,>=1.4.2 requirements.txt
Size: 54.9 MB - Last synced: about 1 month ago - Pushed: about 1 month ago
ostanley/phaseprep
fMRI phase processing interfaces and workflows in nipype- ==1.3.2 requirements.txt
Size: 88.9 KB - Last synced: 9 months ago - Pushed: 11 months ago
IanEisenberg/Prob_Context_Task
- 70a85b98e6161620af1763c050212e348cd20388 fmri/docker_files/requirements.txt
Size: 150 MB - Last synced: 27 days ago - Pushed: over 5 years ago
yibeichan/pydra-fitlins Fork of nipype/pydra-fitlins
- * requirements.txt
Size: 125 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
TIGRLab/niviz
Extensions to niworkflows and nipype for flexible visualization and reporting of pre-existing outputs- ==1.3.2 requirements.txt
Size: 6.52 MB - Last synced: about 1 year ago - Pushed: over 2 years ago
ostanley1/nipype_phase_regression
Preprocessing and first level analysis for phase regression- ==0.7.1.post1 requirements.txt
Last synced: over 1 year ago
omidvarnia/fmriprep
fMRIprep is a functional magnetic resonance image pre-processing pipeline that is designed to provide an easily accessible, state-of-the-art interface that is robust to differences in scan acquisition protocols and that requires minimal user input, while providing easily interpretable and comprehensive error and output reporting.- >=0.4.1 docs/environment.yml
- >=0.4.1 requirements.txt
Last synced: over 1 year ago
bu-icsg/Hardware_Performance_Counters_Can_Detect_Malware_Myth_or_Fact
Code and Data for AisaCCS 2018 paper: Hardware Performance Counters Can Detect Malware: Myth or Fact?- ==0.3.12 data_analysis/pip_requirements.txt
Size: 217 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
fogunsan/dmri-microstructure Fork of TIGRLab/dmri-microstructure
- ==1.6.2 requirements.txt
Size: 805 KB - Last synced: 2 months ago - Pushed: over 1 year ago
pcamach2/smriprep Fork of nipreps/smriprep
Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)- >=1.4.0,<1.6 docs/requirements.txt
Size: 155 MB - Last synced: about 1 year ago - Pushed: about 1 year ago
khanlab/pythondeps-snakedwi
- 1.7.1 poetry.lock
Size: 52.7 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
poldracklab/Self_Regulation_Ontology_fMRI
- 70a85b98e6161620af1763c050212e348cd20388 docker_files/pip_requirements.txt
Size: 54.6 MB - Last synced: 27 days ago - Pushed: over 2 years ago
rmarkello/antslct
For running ANTs longitudinal cortical thickness pipeline- ==0.3.1 environment.yml
Size: 73.2 KB - Last synced: about 1 year ago - Pushed: over 4 years ago
nikzadkhani/Famished-Geese
- ==1.3.3 requirements.txt
Size: 32.2 MB - Last synced: 3 months ago - Pushed: almost 3 years ago
kaitj/regvizQC 📦
Quick visual check of registration- ==0.5.1 requirements.txt
Size: 11.7 KB - Last synced: 9 months ago - Pushed: almost 4 years ago
cosanlab/FNL_dyad
- ==0.2.7 requirements.txt
Size: 17.5 MB - Last synced: 7 months ago - Pushed: 7 months ago
spinoza-centre/pRFline
Repository for the pRF in line-scanning project- ==1.7.9 environment.yml
Size: 558 MB - Last synced: 29 days ago - Pushed: 29 days ago
teresamg/mriqc Fork of nipreps/mriqc
Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain- >= 1.7.7 pyproject.toml
Size: 122 MB - Last synced: 3 months ago - Pushed: 3 months ago
moschams/ds003-post-fMRIPrep-analysis Fork of poldracklab/ds003-post-fMRIPrep-analysis
An exemplary task analysis workflow to run on OpenNeuro's ds000003 data, after preprocessing with fMRIPrep- <0.9.0a0,>=0.8.1 requirements.txt
Size: 267 MB - Last synced: 10 months ago - Pushed: 10 months ago
eric2302/petprep_hmc Fork of mnoergaard/petprep_hmc
PETPrep head motion correction workflow- ==1.7.9 environment.yml
- ==1.7.9 petprep_hmc.egg-info/requires.txt
- ==1.7.9 setup.py
Size: 131 MB - Last synced: 3 months ago - Pushed: 3 months ago
snyuci/fmriprep Fork of nipreps/fmriprep
fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.- @ git+https://github.com/nipreps/niworkflows.git@master pyproject.toml
- ==1.8.1 requirements.txt
Size: 51 MB - Last synced: 9 months ago - Pushed: 9 months ago
bilgelm/petdeface Fork of openneuropet/petdeface
A nipype implementation of an anatomical MR and PET defacing pipeline for BIDS datasets- 1.8.1 poetry.lock
- ^1.8.1 pyproject.toml
Size: 56.8 MB - Last synced: about 2 months ago - Pushed: 8 months ago
marcellamontagnese/smriprep Fork of nipreps/smriprep
Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)- >=1.4.0rc4,<1.5 docs/requirements.txt
Size: 65.7 MB - Last synced: 8 months ago - Pushed: over 2 years ago
yibeichan/mriqc Fork of nipreps/mriqc
Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain- >= 1.7.7 pyproject.toml
Size: 122 MB - Last synced: 8 months ago - Pushed: 8 months ago
tsalo/xcp_d Fork of PennLINC/xcp_d
Post-processing of fMRIPrep , NiBabies, HCP, and DCAN outputs- == 1.7.3 pyproject.toml
Size: 603 MB - Last synced: about 1 month ago - Pushed: about 1 month ago
PennLINC/xcp_d
Post-processing of fMRIPrep, NiBabies, and HCP outputs- == 1.7.3 pyproject.toml
Size: 599 MB - Last synced: 5 days ago - Pushed: 5 days ago
DimitriPapadopoulos/fmriprep Fork of nipreps/fmriprep
fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.- @ git+https://github.com/nipreps/niworkflows.git@master pyproject.toml
- ==1.8.1 requirements.txt
Size: 56.8 MB - Last synced: 12 days ago - Pushed: 12 days ago
bpinsard/smriprep Fork of nipreps/smriprep
Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcesssing tools)- * docs/requirements.txt
Size: 28.6 MB - Last synced: about 19 hours ago - Pushed: 1 day ago
PennLINC/aslprep
Preprocessing of arterial spin labeling (ASL) data- ~= 1.7.3 pyproject.toml
Size: 125 MB - Last synced: 5 months ago - Pushed: 5 months ago
mgxd/smriprep Fork of nipreps/smriprep
Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcesssing tools)- * requirements.txt
Size: 50.5 MB - Last synced: 24 days ago - Pushed: 24 days ago
celprov/mriqc Fork of nipreps/mriqc
Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain- >= 1.7.7 pyproject.toml
Size: 122 MB - Last synced: 25 days ago - Pushed: 26 days ago
nipreps/mriqc
Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain- >= 1.7.7 pyproject.toml
Size: 122 MB - Last synced: 17 days ago - Pushed: 17 days ago
turing-medical/smriprep Fork of nipreps/smriprep
Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)- >=1.8.0 docs/requirements.txt
Size: 13.1 MB - Last synced: 16 days ago - Pushed: 7 months ago
tsalo/fmriprep Fork of nipreps/fmriprep
fMRIprep is a functional magnetic resonance image pre-processing pipeline that is designed to provide an easily accessible, state-of-the-art interface that is robust to differences in scan acquisition protocols and that requires minimal user input, while providing easily interpretable and comprehensive error and output reporting.- @ git+https://github.com/nipreps/niworkflows.git@master pyproject.toml
- ==1.8.1 requirements.txt
Size: 56.9 MB - Last synced: about 11 hours ago - Pushed: about 11 hours ago
taronling/performer-speedyspeech Fork of taronling-forks/speedyspeech
- ==1.8.1 artemis_requirements.txt
Size: 66.5 MB - Last synced: 7 months ago - Pushed: 7 months ago
gjheij/linescanning
Package for (pre)processing of anatomical and (linescanning) fMRI data- * requirements.txt
- ==1.7.9 environment.yml
Size: 98.3 MB - Last synced: 23 days ago - Pushed: 24 days ago
Canhui/astri_share
- >= 1.7.7 pyproject.toml
Size: 45.3 MB - Last synced: 6 months ago - Pushed: 6 months ago
lindaxu52/xcp_d_2
xcp_d- == 1.7.3 pyproject.toml
Size: 597 MB - Last synced: 6 months ago - Pushed: 6 months ago
nih-fmrif/contarg
A python package implementing/wrapping methods for functional connectivity personalized targeting of rTMS therapy.- >= 1.7.1 pyproject.toml
Size: 4.21 MB - Last synced: 19 days ago - Pushed: 3 months ago
nipreps/smriprep
Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)- >=1.8.0 docs/requirements.txt
- >= 1.8.0 pyproject.toml
- ==1.10.1 requirements.txt
Size: 580 MB - Last synced: 7 days ago - Pushed: 12 days ago
gnngo4/animalfmritools
- * Pipfile
- ==1.8.1 Pipfile.lock
Size: 19.2 MB - Last synced: 3 months ago - Pushed: 3 months ago
pappaslab/stroke_fmri
- ==0.2.8 scripts/denoising/denoiser_scripts/denoiser/denoiser-master/requirements.txt
Size: 88.9 KB - Last synced: 3 months ago - Pushed: 3 months ago
nipreps-containers/miniconda
A miniconda Docker image- ==1.10.0 requirements.txt
Size: 47.9 KB - Last synced: 2 months ago - Pushed: 2 months ago
spack/pypi-to-spack-package
Convert PyPI entries to Spack package.py- ==1.4.0 spack_requirements.txt
- ==1.3.5 spack_requirements.txt
- ==1.0.4 spack_requirements.txt
Size: 545 KB - Last synced: about 1 month ago - Pushed: about 1 month ago
zhangerjun/UNet_model
Python verson of the original unet model. It is reproducible.- ==1.3.2 requirements.txt
Size: 36 MB - Last synced: 18 days ago - Pushed: 19 days ago
sunni426/nova-networks
- ==1.8.1 team1_bestfitting/predict/data_process/.ipynb_checkpoints/requirements-checkpoint.txt
- ==1.8.1 team1_bestfitting/predict/data_process/requirements.txt
Size: 483 MB - Last synced: 12 days ago - Pushed: 12 days ago
nipype/pydra-niworkflows
Port of the `niworkflows` package from Nipype to Pydra- * nipype-auto-conv/requirements.txt
Size: 33.2 KB - Last synced: 26 days ago - Pushed: 27 days ago
alixlam/fmristroke
Adding quality checks and confounds computation steps to fmriprep for stroke data.- ==1.7.9 requirements.txt
Size: 174 MB - Last synced: 17 days ago - Pushed: 18 days ago
PennLINC/qsipost
- >=1.9,<= 1.10 pyproject.toml
Size: 178 MB - Last synced: 5 days ago - Pushed: 5 days ago