Ecosyste.ms: Repos

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Package Usage: pypi: ontobio

Library for working with OBO Library Ontologies and associations
188 versions
Latest release: 6 months ago
1 dependent package
2,794 downloads last month

View more package details: https://packages.ecosyste.ms/registries/pypi.org/packages/ontobio

View more repository details: https://repos.ecosyste.ms/hosts/GitHub/repositories/biolink%2Fontobio

Dependent Repos 21

stevencox/green-apis

Carolina Knowledge Network

==0.2.25 requirements.txt

Size: 28.3 KB - Last synced: 28 days ago - Pushed: over 1 year ago

rcolinp/owl-obo-rdf-data-wrangle

Exploration of python libraries to facilitate handling/working with OWL, RDF & OBO

2.7.16 poetry.lock
^2.7.10 pyproject.toml

Size: 926 KB - Last synced: about 1 year ago - Pushed: about 1 year ago

geneontology/gp2term

==1.2.4 requirements.txt

Size: 14.6 KB - Last synced: about 2 months ago - Pushed: over 1 year ago

NCATS-Gamma/robokop-build

Library for building local knowledge graphs in ROBOKOP

==0.2.19 builder/requirements.txt

Size: 1.76 MB - Last synced: 28 days ago - Pushed: over 1 year ago

geneontology/go-fastapi

2.8.2 poetry.lock
^2.8.2 pyproject.toml
==2.8.2 requirements.txt

Size: 3.87 MB - Last synced: 2 months ago - Pushed: 2 months ago

geneontology/go-site

A collection of metadata, tools, and files associated with the Gene Ontology public web presence.

* pipeline/go-association-transit/requirements.txt
* pipeline/go-association-transit/setup.py
==2.8.2 pipeline/requirements.txt

Size: 13.4 MB - Last synced: 1 day ago - Pushed: 3 days ago

lhannest/biolink

Monarch Biolink Beacon

==0.2.35 requirements.txt

Size: 61.5 KB - Last synced: about 1 year ago - Pushed: about 6 years ago

monarch-initiative/dipper

Data Ingestion Pipeline for Monarch

* Pipfile
==1.14.0 requirements/all-sources.txt
* setup.py

Size: 91.7 MB - Last synced: 26 days ago - Pushed: over 1 year ago

monarch-initiative/biolink-api

API for linked biological knowledge

91222c8b442196d6eeeafeb6073946494e8a3a10 requirements.txt

Size: 1.19 MB - Last synced: 4 days ago - Pushed: about 2 years ago

alliance-genome/agr_loader

Data loader for the Alliance of Genome Resources website.

==1.20.0 requirements.txt

Size: 3.48 MB - Last synced: 9 days ago - Pushed: 10 days ago

geneontology/signor2gocam

Converting Signor pathways to GO-CAM

==2.7.6 requirements.txt

Size: 135 KB - Last synced: 7 months ago - Pushed: over 2 years ago

ncats/translator-workflows

* Workflow2/requirements.txt

Size: 67 MB - Last synced: 9 days ago - Pushed: 9 days ago

STARInformatics/biomed-workbench

==1.10.0 requirements.txt

Size: 33.6 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

geneontology/go-pombase

Code for generating process-centric GO-CAM models from GAFs

==1.6.3 requirements.txt

Size: 68.4 KB - Last synced: 6 months ago - Pushed: 6 months ago

cmungall/linkml-gocam

* requirements.txt

Size: 5.52 MB - Last synced: 4 days ago - Pushed: almost 3 years ago

dustine32/slim_maker

==1.4.3 requirements.txt

Size: 6.84 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

NCATS-Tangerine/greent

* greent/requirements.txt

Size: 481 KB - Last synced: 9 days ago - Pushed: over 1 year ago

kevinxin90/gene_analysis_api

API for Gene Analysis

* requirements.txt

Size: 14.6 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago

NCATS-Tangerine/mvp-module-library

Collection of modules for executing MVP Workflows

* requirements.txt

Size: 13.9 MB - Last synced: 24 days ago - Pushed: over 4 years ago

geneontology/gocamgen

Base repo for constructing GO-CAM model RDF

==1.7.1 gpaddiff/requirements.txt
==1.13.1 requirements.txt
==1.13.1 setup.py

Size: 295 KB - Last synced: 10 days ago - Pushed: over 2 years ago

dustine32/gaf_diff

Compare two GAF files to find annotations added or removed

==1.4.3 requirements.txt

Size: 5.86 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

kcortes133/EDS_Rotation

* requirements.txt

Size: 5.47 MB - Last synced: 26 days ago - Pushed: over 1 year ago

RTXteam/RTX-KG2

Build system for the RTX-KG2 biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)

==2.8.0 requirements-kg2-build.txt
==1.10.1 requirements-kg2-neo4j.txt

Size: 4.17 MB - Last synced: 8 days ago - Pushed: 19 days ago

NCATS-Tangerine/TangeReasoner

Translator Knowledge Graph Standard API for Assorted Tangerine Reasoner Initiatives

==1.10.2 requirements.txt

Size: 23.4 KB - Last synced: 28 days ago - Pushed: almost 5 years ago

deepakunni3/geno-pheno-search-solr

This repository contains Solr schema, loader, related configurations, and a Dockerfile for spinning up a Solr Docker container that powers GenoPhenoSearch.