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Package Usage: pypi: pyhmmer
Cython bindings and Python interface to HMMER3.
45 versions
Latest release: about 1 year ago
5 dependent packages
10,603 downloads last month
View more package details: https://packages.ecosyste.ms/registries/pypi.org/packages/pyhmmer
View more repository details: https://repos.ecosyste.ms/hosts/GitHub/repositories/althonos%2Fpyhmmer
Dependent Repos 6
althonos/pytrimal
Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!- * docs/requirements.txt
Size: 667 KB - Last synced: 24 days ago - Pushed: 26 days ago
K2SOHIGH/pyCALF
Search calcyanin protein in your CDS fasta file(s)- * setup.py
Size: 357 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
3dem/model-angelo
Automatic atomic model building program for cryo-EM maps- * requirements.txt
Size: 69.8 MB - Last synced: 4 months ago - Pushed: 4 months ago
Ulthran/ShotgunUnifrac
- * CorGE/setup.py
Size: 43.1 MB - Last synced: 23 days ago - Pushed: 23 days ago
yanjordan/model-angelo Fork of 3dem/model-angelo
Automatic atomic model building program for cryo-EM maps- >=0.7.1 requirements.txt
Size: 15.7 MB - Last synced: about 2 months ago - Pushed: 12 months ago
AmayAgrawal/bigslice Fork of medema-group/bigslice
A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data- * setup.py
Size: 4.53 MB - Last synced: 10 months ago - Pushed: 10 months ago
kipkurui/sadie Fork of jwillis0720/sadie
The Complete Python Antibody Library- 0.10.2 poetry.lock
- ^0.10.2 pyproject.toml
Size: 321 MB - Last synced: 29 days ago - Pushed: 8 months ago
BeckResearchLab/learn2thermDB
Prediction of high temperature stable protein structures approached as a natural language problem- ==0.8.1 environment.yml
Size: 158 MB - Last synced: about 2 months ago - Pushed: 9 months ago
althonos/pharokka Fork of gbouras13/pharokka
fast phage annotation program- >=0.10.0 setup.py
Size: 50.3 MB - Last synced: 9 months ago - Pushed: 9 months ago
gbouras13/megapharokka
A fork of Pharokka to handle enVhogs- >=0.10.0 setup.py
Size: 10.9 MB - Last synced: 3 months ago - Pushed: 9 months ago
BIONF/fDOG
Feature-aware Directed OrtholoG search- * setup.py
Size: 28.4 MB - Last synced: 1 day ago - Pushed: 4 days ago
jwestrob/astra
pyHMMer-based sequence search and retrieval tool.- * setup.py
Size: 723 KB - Last synced: about 2 months ago - Pushed: about 2 months ago
Ebedthan/hkgfinder
Find housekeeping genes in prokaryotic (meta)genomic data- 0.8.0 poetry.lock
- ^0.8.0 pyproject.toml
Size: 15.2 MB - Last synced: about 2 months ago - Pushed: 11 months ago
xqzhang777/map2seq Fork of jianglab/map2seq
Identify the best protein sequence that explains a 3D density map- ==0.8.2 requirements.txt
Size: 12.9 MB - Last synced: 4 months ago - Pushed: 4 months ago
monagrland/pytransaln
Translation-guided nucleotide alignment for coding sequences- ==0.10 pyproject.toml
Size: 95.7 KB - Last synced: 26 days ago - Pushed: 4 months ago
JLSteenwyk/PHYling Fork of stajichlab/PHYling
Unified PHYling pipeline for species tree building from annotated genomes (see https://github.com/stajichlab/AAFTF and https://github.com/nextgenusfs/funannotate for assembly and annotation steps)- >=0.10.2 requirements.txt
Size: 3.58 MB - Last synced: 8 months ago - Pushed: 8 months ago
taronling/performer-speedyspeech Fork of taronling-forks/speedyspeech
- ==0.10.2 artemis_requirements.txt
Size: 66.5 MB - Last synced: 8 months ago - Pushed: 8 months ago
moshi4/pybarrnap
Python implementation of barrnap (Bacterial ribosomal RNA predictor)- 0.10.4 poetry.lock
- >=0.10.4 pyproject.toml
Size: 21.1 MB - Last synced: about 2 months ago - Pushed: 3 months ago
eloyvallinaes/electron-chain
- ==0.5.0 requirements.txt
Size: 71.5 MB - Last synced: 3 months ago - Pushed: about 2 years ago
new-atlantis-labs/pykofamsearch-stable
Fast implementation of KofamScan optimized for high-memory systems using PyHmmer- * setup.py
Size: 68.8 MB - Last synced: 2 days ago - Pushed: 3 days ago
nebiolabs/domainator
A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.- >=0.10.2 pyproject.toml
Size: 4.06 MB - Last synced: 2 days ago - Pushed: 2 days ago
new-atlantis-labs/pyhmmsearch-stable
Fast implementation of HMMSEARCH optimized for high-memory systems using PyHmmer- >=0.10.12 pyhmmsearch.egg-info/requires.txt
- * setup.py
Size: 9.88 MB - Last synced: about 2 months ago - Pushed: about 2 months ago
jolespin/pyhmmsearch
Fast implementation of HMMSEARCH optimized for high-memory systems using PyHmmer- >=0.10.12 pyhmmsearch.egg-info/requires.txt
- * setup.py
Size: 9.94 MB - Last synced: 2 days ago - Pushed: 2 days ago