Ecosyste.ms: Repos

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Package Usage: pypi: pyrodigal

Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes.
50 versions
Latest release: 11 months ago
5 dependent packages
3,321 downloads last month

View more package details: https://packages.ecosyste.ms/registries/pypi.org/packages/pyrodigal

View more repository details: https://repos.ecosyste.ms/hosts/GitHub/repositories/althonos%2Fpyrodigal

Dependent Repos 3

arpcard/rgi
Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on homology and SNP models.
  • >=2.0.0 requirements.txt

Size: 132 MB - Last synced: 25 days ago - Pushed: 25 days ago

ku-cbd/PhageBoost
Rapid discovery of novel prophages using biological feature engineering and machine learning
  • * requirements.txt

Size: 36.2 MB - Last synced: 1 day ago - Pushed: over 1 year ago

fmaguire/rgi Fork of arpcard/rgi
Resistance Gene Identifier (RGI)
  • >=2.0.0 requirements.txt

Size: 132 MB - Last synced: about 2 months ago - Pushed: 12 months ago

bgruening/bakta Fork of oschwengers/bakta
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
  • * setup.py

Size: 61.3 MB - Last synced: about 2 months ago - Pushed: about 2 months ago

007gzs/test
  • * requirements.txt

Size: 1.6 MB - Last synced: 5 months ago - Pushed: 5 months ago

gbouras13/dnaapler
Reorients assembled microbial sequences
  • 2.1.0 poetry.lock
  • >=2.0.0 pyproject.toml
  • >=2.0.0 requirements.txt

Size: 24.2 MB - Last synced: about 2 months ago - Pushed: 4 months ago

St4NNi/bakta Fork of oschwengers/bakta
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
  • * setup.py

Size: 33.1 MB - Last synced: about 1 month ago - Pushed: over 1 year ago

JeanMainguy/Binette Fork of genotoul-bioinfo/Binette
A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.
  • * setup.py

Size: 224 KB - Last synced: 6 months ago - Pushed: 6 months ago

samnooij/dnaapler Fork of gbouras13/dnaapler
Reorients assembled microbial sequences
  • 2.1.0 poetry.lock
  • >=2.0.0 pyproject.toml
  • >=2.0.0 requirements.txt

Size: 8.6 MB - Last synced: 9 months ago - Pushed: 9 months ago

althonos/pharokka Fork of gbouras13/pharokka
fast phage annotation program
  • >=2.0.0 setup.py

Size: 50.3 MB - Last synced: 9 months ago - Pushed: 9 months ago

gbouras13/megapharokka
A fork of Pharokka to handle enVhogs
  • * setup.py

Size: 10.9 MB - Last synced: 3 months ago - Pushed: 8 months ago

Ebedthan/hkgfinder
Find housekeeping genes in prokaryotic (meta)genomic data
  • 2.1.0 poetry.lock
  • ^2.1.0 pyproject.toml

Size: 15.2 MB - Last synced: about 1 month ago - Pushed: 10 months ago

gbouras13/hafeZ Fork of Chrisjrt/hafeZ
A tool for identifying active prophage elements through read mapping
  • >=0.4.7 setup.py

Size: 43.7 MB - Last synced: 8 months ago - Pushed: 8 months ago

taronling/performer-speedyspeech Fork of taronling-forks/speedyspeech
  • ==3.0.1 artemis_requirements.txt

Size: 66.5 MB - Last synced: 8 months ago - Pushed: 8 months ago

althonos/pyrodigal-gv
A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.
  • * pyrodigal_gv/tests/requirements.txt

Size: 844 KB - Last synced: 23 days ago - Pushed: 23 days ago

BigDataBiology/GMSC-mapper
  • * requirements.txt

Size: 225 KB - Last synced: about 1 month ago - Pushed: 2 months ago

BigDataBiology/SantosJunior_Torres_2024_AMPSphere_v1
Figures and files used in the AMPSphere manuscript
  • ==0.7.3 environment.yml

Size: 51.2 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

nebiolabs/domainator
A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.
  • >=3.0.1 pyproject.toml

Size: 4.06 MB - Last synced: 15 days ago - Pushed: 16 days ago