Ecosyste.ms: Repos

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Package Usage: pypi: tsinfer

Infer tree sequences from genetic variation data.
10 versions
Latest release: about 1 year ago
228 downloads last month

View more package details: https://packages.ecosyste.ms/registries/pypi.org/packages/tsinfer

Dependent Repos 8

hyanwong/pages
  • * requirements.txt

Size: 14.5 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago

tskit-dev/what-is-an-arg-paper
Manuscript and code for the "What is an ARG?" paper
  • >=0.2.1 requirements.txt

Size: 6.07 MB - Last synced: 1 day ago - Pushed: 1 day ago

hyanwong/genealogy_workshop
  • * requirements.txt

Size: 154 MB - Last synced: 11 months ago - Pushed: 12 months ago

jeromekelleher/ga4gh-variant-sim
Simulations for benchmarking large-scale variant stores
  • * requirements.txt

Size: 23.4 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago

tskit-dev/tsdate
Infer the age of ancestral nodes in a tree sequence.
  • >=0.2.0 requirements.txt

Size: 13 MB - Last synced: about 17 hours ago - Pushed: about 19 hours ago

JereKoskela/what-is-an-arg-paper Fork of tskit-dev/what-is-an-arg-paper
Manuscript and code for the "What is an ARG?" paper
  • >=0.2.1 requirements.txt

Size: 3.71 MB - Last synced: 8 months ago - Pushed: 8 months ago

awohns/unified_genealogy_paper
A Unified Genealogy of Modern and Ancient Humans
  • ==0.2.1 requirements.txt

Size: 1.43 MB - Last synced: 11 months ago - Pushed: about 1 year ago

hyanwong/tsdate Fork of tskit-dev/tsdate
Infer node ages conditional on a tree sequence topology.
  • >=0.3.0 requirements.txt

Size: 12.9 MB - Last synced: 4 months ago - Pushed: 4 months ago

007gzs/test
  • * requirements.txt

Size: 1.6 MB - Last synced: 5 months ago - Pushed: 5 months ago

hyanwong/workshop-pages
Oxford statgen genealogy workshop jupyterlite instance
  • * requirements.txt

Size: 6.44 MB - Last synced: 8 months ago - Pushed: 8 months ago

hyanwong/unified_genealogy_paper Fork of awohns/unified_genealogy_paper
A Unified Genealogy of Modern and Ancient Humans
  • ==0.2.1 requirements.txt

Size: 1.42 MB - Last synced: 23 days ago - Pushed: 23 days ago

percyfal/pgip-jlite
JupyterLite test for pgip
  • * requirements.txt

Size: 520 KB - Last synced: 9 days ago - Pushed: 9 days ago

hfr1tz3/tsdate Fork of tskit-dev/tsdate
Infer the age of ancestral nodes in a tree sequence.
  • >=0.3.0 requirements.txt

Size: 12.7 MB - Last synced: 4 months ago - Pushed: 4 months ago

hyanwong/what-is-an-arg-paper Fork of tskit-dev/what-is-an-arg-paper
Manuscript and code for the "What is an ARG?" paper
  • >=0.2.1 requirements.txt

Size: 6 MB - Last synced: about 2 months ago - Pushed: about 2 months ago

gregorgorjanc/what-is-an-arg-paper Fork of tskit-dev/what-is-an-arg-paper
Manuscript and code for the "What is an ARG?" paper
  • >=0.2.1 requirements.txt

Size: 4.75 MB - Last synced: 8 months ago - Pushed: 8 months ago

percyfal/workshop-biodiversity-summit
  • * requirements.txt

Size: 18 MB - Last synced: about 2 months ago - Pushed: about 2 months ago

bunop/TSKITetude
TSKIT tutorials
  • 0.3.1 poetry.lock

Size: 2.25 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

bunop/docker-tskit
Custom docker image for tskit related software
  • 0.3.1 poetry.lock
  • ^0.3.1 pyproject.toml

Size: 22.5 KB - Last synced: 2 months ago - Pushed: 2 months ago