Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
Package Usage: pypi: upsetplot
Draw Lex et al.'s UpSet plots with Pandas and Matplotlib
23 versions
Latest release: over 1 year ago
15 dependent packages
66,032 downloads last month
View more package details: https://packages.ecosyste.ms/registries/pypi.org/packages/upsetplot
Dependent Repos 49
opensafely-core/python-docker
Image for running python in OpenSAFELY environments- * requirements.in
- ==0.6.1 requirements.txt
Size: 184 KB - Last synced: about 1 month ago - Pushed: 6 months ago
MaayanLab/appyter-catalog
A catalog of appyter notebooks- ==0.6.1 appyters/CompareSets/requirements.txt
Size: 209 MB - Last synced: 25 days ago - Pushed: 3 months ago
berndreinhold/datadriven_dedup
- * requirements.txt
Size: 5.5 MB - Last synced: 10 months ago - Pushed: over 1 year ago
sxie04/appyter-catalog Fork of MaayanLab/appyter-catalog
A catalog of appyter notebooks- * appyters/STEAP_post_processing_analysis/requirements.txt
- ==0.6.1 appyters/CompareSets/requirements.txt
Size: 183 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
marakeby/pnet_prostate_paper
P-NET, Biologically informed deep neural network for prostate cancer classification and discovery- ==0.4.0 environment.yml
Size: 5.26 MB - Last synced: 7 months ago - Pushed: over 2 years ago
proccaserra/rose2018ng-notebook
a repository for notebooks associated with Rose targeted metabolite profiling analysis (nature genetics 2018)- >=0.2.0 requirements.txt
Size: 11.1 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
neurodata/platy-data
Extract and Analyze Data from the Platynereis Dumerilii Larva Connectome- 0.6.1 poetry.lock
Size: 127 MB - Last synced: 9 months ago - Pushed: 9 months ago
arpcard/card-live-dashboard
- * setup.py
Size: 688 KB - Last synced: 21 days ago - Pushed: 11 months ago
GLAM-Workbench/ozglam-data
- * requirements.in
Size: 822 KB - Last synced: 25 days ago - Pushed: over 1 year ago
lambda-science/HistoQuant
- 0.6.0 poetry.lock
Size: 1.6 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
aisha-diamondage/fl63-innovation
- * rna-seq/scripts/requirements.txt
Size: 74.8 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago
SystemsGenetics/GSForge 📦
A gene (feature) selection toolset for gene expression matrix (GEM) data.- * requirements.txt
Size: 103 MB - Last synced: 4 days ago - Pushed: over 2 years ago
research-software-ecosystem/utils
This repo consists of utility scripts and ecosystem maintenance tools- * scripts/stats/requirements.txt
Size: 6.18 MB - Last synced: about 1 month ago - Pushed: 6 months ago
JuliaS92/SpatialProteomicsQC
- * requirements.txt
Size: 50.6 MB - Last synced: 9 months ago - Pushed: 9 months ago
mwinding/connectome_tools
tools to analyze connectomics data from a CATMAID instance; includes modified scripts from neurodata/maggot_models by bdpedigo and from mwinding/connectome_analysis- * setup.py
Size: 387 KB - Last synced: 3 months ago - Pushed: 3 months ago
McIntyre-Lab/TranD
Transcript Distance Calculations- * source/requirements.txt
Size: 123 MB - Last synced: 9 days ago - Pushed: 10 days ago
parashardhapola/bartide
- * setup.py
Size: 19.9 MB - Last synced: 14 days ago - Pushed: over 1 year ago
Starlitnightly/ERgene
A python module that could analysis the ERGs- * ERgene.egg-info/requires.txt
- * setup.py
Size: 4.91 MB - Last synced: 12 days ago - Pushed: almost 3 years ago
marnec/disprotnotebook
- * Pipfile
- ==0.3.0.post3 Pipfile.lock
Size: 206 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
BioML-CM/CreamMist
- ==0.6.0 requirement.txt
Size: 52.7 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
npklein/metabrain
Various scripts to process RNAseq data for brain eQTL analysis- >=0.4.0 2021-deKleinEtAl/6-deconvolution/deconvolution/requirements.txt
Size: 18.9 MB - Last synced: 2 months ago - Pushed: over 1 year ago
Dowell-Lab/DAStk
Differential ATAC-seq toolkit- * setup.py
Size: 10.4 MB - Last synced: 15 days ago - Pushed: 5 months ago
NolanHartwick/orthopos
Python package + CLI for analysis of orthogroups as produced by orthofinder or some other tool.- * setup.py
Last synced: over 1 year ago
EsraaHazem/Real-and-Fake-names-classifier
- ==0.6.1 Docker/requirements.txt
Size: 310 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
gillislab/pyMN
Python Implementation of MetaNeighbor scRNAseq Analysis Method- * requirements.txt
Size: 6.85 MB - Last synced: 5 months ago - Pushed: over 1 year ago
research-software-ecosystem/content
A metadata commons to store research software metadata- * scripts/stats/requirements.txt
Size: 3.44 GB - Last synced: 7 days ago - Pushed: 8 days ago
deniztepe/open-MaStR Fork of OpenEnergyPlatform/open-MaStR
A collaborative software to download the energy database Marktstammdatenregister (MaStR)- * postprocessing/requirements_pp.txt
Size: 27.8 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
theislab/spapros
Python package for Probe set selection for targeted spatial transcriptomics.- ==0.6.1 requirements.txt
Size: 97.4 MB - Last synced: 13 days ago - Pushed: 13 days ago
Koushul/CITRUS Fork of osmanbeyoglulab/CITRUS
- ==0.4.0 pnet_prostate_paper/environment.yml
Size: 570 MB - Last synced: 10 months ago - Pushed: over 1 year ago
Bryan1195/Course_Missing_Values
- ==0.6.1 requirements.txt
Size: 4 MB - Last synced: 9 months ago - Pushed: over 1 year ago
pnm27/snRNA_scRNA_Pipeline
Snakemake Pipeline with "selectable" modules- =0.6.0=pypi_0 requirements/requirements_conda.txt
Size: 9.99 MB - Last synced: 26 days ago - Pushed: 26 days ago
grahamdelafield/Commons
Common classes, tools and functions used in my day-to-day work- * requirements.txt
Size: 3.57 MB - Last synced: about 1 month ago - Pushed: about 1 month ago
freecraver/cord-19-analysis
- ==0.4.0 analysis/requirements.txt
Size: 4.4 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago
grahamdelafield/Example_Quant_Discov_MS
- * commons/requirements.txt
Size: 401 KB - Last synced: about 1 year ago - Pushed: over 3 years ago
jpsmithnl/notebooks
- 0.1 poetry.lock
- ^0.1.0 pyproject.toml
Size: 14.1 MB - Last synced: about 1 year ago - Pushed: over 5 years ago
CodingBash/CRISPR-be-sensor-deprecated
Deprecated. See CRISPR-ambiguous-mapping for mapping code- 0.8.0 crispr-be-sensor/poetry.lock
- ^0.8.0 crispr-be-sensor/pyproject.toml
Size: 10.4 MB - Last synced: 2 months ago - Pushed: about 1 year ago
turbomam/mixs-subset-examples-first
A subset of the MIxS specification that's self-documenting and DataHarmonizer compatible. Comes with valid and invalid data examples. Subset = all checklists and all environmental packages, but partial combinations.- 0.8.0 poetry.lock
Size: 10.8 MB - Last synced: about 1 year ago - Pushed: about 1 year ago
jyang-2/mb-odor-rearing
- * requirements.txt
Size: 13.4 MB - Last synced: about 1 year ago - Pushed: over 2 years ago
lobrylab/PitViper
Snakemake pipeline for meta-analysis of functional screening data- =0.8.0=pyhd8ed1ab_0 PitViper/requirements.txt
Size: 30.2 MB - Last synced: 18 days ago - Pushed: 18 days ago
cmungall/reactioner
Parses textual descriptions of reactions- >=0.0 requirements.txt
Size: 17 MB - Last synced: 19 days ago - Pushed: over 5 years ago
GLAM-Workbench/trove-people
- * requirements.in
- ==0.6.1 requirements.txt
Size: 1.05 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
marcelamu9/Manejo_De_Datos_Faltantes
Este es un proyecto basado en el curo de Platzi Curso de Manejo de Datos Faltantes: Detección y Exploración ditacto por el profesor Jesús Velez.- ==0.6.1 requirements.txt
Size: 1.5 MB - Last synced: about 1 year ago - Pushed: about 1 year ago
Monkey8596/Missing_data_handling
A project to practice missign values in the data. Including the visualizations to evaluate the information- ==0.6.1 requirements.txt
Size: 3.11 MB - Last synced: about 1 year ago - Pushed: about 1 year ago
MDverse/mdda
Molecular dynamics data analysis- * binder/environment.yml
Size: 4.46 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
messcode/STAMarker
STAMarker: Identify Spatial Domain-specific Variable Genes via Ensemble Graph Attention Autoencoders- ==0.8.0 requirements.txt
Size: 1.13 GB - Last synced: 6 months ago - Pushed: 6 months ago
VoineaguLabUNSW/BITHub-archived
Exploring gene expression properties of the human brain with BITHub- * pipeline/environment.yaml
Size: 434 MB - Last synced: 6 months ago - Pushed: 7 months ago
litao1503/Analysis_script_for_fast_growing_bamboo_shoot_datasets
- =0.6.0 environment.yml
Size: 12.6 MB - Last synced: 11 months ago - Pushed: 11 months ago
SCourses/Cursos_Platzi
- ==0.6.1 Datos_Faltantes/datos-faltantes-Duplicate/requirements.txt
Size: 38.8 MB - Last synced: 12 months ago - Pushed: 12 months ago
nlejay/accidents_circulation
- * requirements.txt
Size: 16.2 MB - Last synced: 10 months ago - Pushed: 10 months ago
turbomam/split-pool-mod-schema
A Schema with processes for splitting, pooling and modifying material entities. Intended to illustrate solutions for NMDC modeling of NEON metadata and metabolomics data. Based on https://github.com/turbomam/examples-first-cookiecutter.- 0.8.0 poetry.lock
Size: 12 MB - Last synced: about 1 year ago - Pushed: about 1 year ago
GenomicsNX/appyter-catalog Fork of MaayanLab/appyter-catalog
A catalog of appyter notebooks- * appyters/CompareSets/requirements.txt
Size: 120 MB - Last synced: about 2 months ago - Pushed: about 3 years ago
kashyapchhatbar/eme_selex
- * docs/requirements.txt
Size: 55.8 MB - Last synced: 17 days ago - Pushed: 11 months ago
DanielUnda/curso-datos-faltantes-main-deteccion-y-exploracion
- ==0.6.1 requirements.txt
Size: 1.89 MB - Last synced: 12 months ago - Pushed: over 1 year ago
lqsae/nano-snakemake Fork of wdecoster/nano-snakemake
A snakemake pipeline for SV analysis from nanopore genome sequencing- ==0.1 environment.yaml
Size: 139 KB - Last synced: about 1 month ago - Pushed: almost 5 years ago
HelgeKrueger/mastodon_recommender
Script that recommends people for you to follow on Mastodon based on your own account.- * Pipfile
- ==0.8.0 Pipfile.lock
Size: 3.65 MB - Last synced: about 1 month ago - Pushed: over 1 year ago
fmaguire/upset_plotly
A plotly implementation of UpSet plots using the upsetplot library- * setup.py
Size: 1.04 MB - Last synced: about 1 month ago - Pushed: over 3 years ago
mjoppich/poreSTAT
poreSTAT: a python framework for working with fast5 third generation sequencing data- * setup.py
Size: 9.95 MB - Last synced: 4 months ago - Pushed: 4 months ago
chiragatha/ozglam-data Fork of GLAM-Workbench/ozglam-data
- * requirements.in
Size: 818 KB - Last synced: about 1 month ago - Pushed: almost 2 years ago
terragord7/pnet_prostate_paper Fork of marakeby/pnet_prostate_paper
P-NET, Biologically informed deep neural network for prostate cancer classification and discovery- ==0.4.0 environment.yml
Size: 5.25 MB - Last synced: 10 months ago - Pushed: over 2 years ago
davidika/ontogpt Fork of monarch-initiative/ontogpt
GPT-based ontological extraction tools, including SPIRES- 0.8.0 poetry.lock
Size: 10.9 MB - Last synced: 10 months ago - Pushed: about 1 year ago
jariel17/curso-datos-faltantes-imputacion Fork of platzi/curso-datos-faltantes-imputacion
Repositorio del proyecto del Curso de Manejo de Datos Faltantes: Imputación- * requirements.txt
Size: 1.96 MB - Last synced: 9 months ago - Pushed: 9 months ago
HobnobMancer/SI_Hobbs_et_al_2023_Pecto_Dickeya
Supplementary information on the exploration of the CAZome and carbohydrate processing enzyme activities in soft rot Pectobacteriaceae- * requirements.txt
Size: 147 MB - Last synced: 7 months ago - Pushed: 7 months ago
rsinghlab/HistoneClocks
This repository contains the code and data to reproduce the results of our paper entitled "Histone mark age of human tissues and cells".- * requirements.txt
Size: 116 MB - Last synced: 13 days ago - Pushed: 2 months ago
philip040404/Aprendizaje_platzi
- * Python/analisis de datos con python/Datos faltantes/curso-datos-faltantes-imputacion-main/requirements.txt
- ==0.6.1 Python/analisis de datos con python/Datos faltantes/requirements.txt
Size: 75.1 MB - Last synced: 4 months ago - Pushed: 4 months ago
shizhan1109/security-patches-dataset Fork of TQRG/security-patches-dataset
☠️ Ground-truth dataset for vulnerability prediction (known research datasets and data sources included such as NVD, CVE Details and OSV); tools to automatically update the data are provided.- * requirements.txt
Size: 123 MB - Last synced: 9 months ago - Pushed: 9 months ago
biogeeker/DAStk Fork of Dowell-Lab/DAStk
Differential ATAC-seq toolkit- * setup.py
Size: 10.4 MB - Last synced: 9 months ago - Pushed: over 4 years ago
homjason/appyter-catalog Fork of MaayanLab/appyter-catalog
A catalog of appyter notebooks- * appyters/CompareSets/requirements.txt
Size: 94.4 MB - Last synced: 9 months ago - Pushed: almost 4 years ago
vanallenlab/beanie
Tool for group biology estimation in single-cell RNAseq data- >=0.8.0 requirements.txt
Size: 21.5 MB - Last synced: 7 months ago - Pushed: 9 months ago
adolfo85/-CO2
Medición de CO2 a nivel mundial - Estadísticos y análisis exploratorio básico. Preparación del dataframe para posterior trabajo en power BI.- ==0.6.1 notebooks/requirements.txt
Size: 765 KB - Last synced: about 1 month ago - Pushed: 7 months ago
agoenergy/open-MaStR-agora Fork of OpenEnergyPlatform/open-MaStR
A collaborative software to download the energy database Marktstammdatenregister (MaStR)- * postprocessing/requirements_pp.txt
Size: 31.2 MB - Last synced: 29 days ago - Pushed: about 1 month ago
lachmann12/appyter-catalog Fork of MaayanLab/appyter-catalog
A catalog of appyter notebooks- * appyters/CompareSets/requirements.txt
Size: 120 MB - Last synced: about 1 month ago - Pushed: over 3 years ago
OpenEnergyPlatform/open-MaStR
A collaborative software to download the energy database Marktstammdatenregister (MaStR)- * postprocessing/requirements_pp.txt
Size: 31.3 MB - Last synced: about 1 month ago - Pushed: about 2 months ago
Paureel/XAI-AGE
- ==0.4.0 environment.yml
Size: 1.22 MB - Last synced: 14 days ago - Pushed: 14 days ago
nlejay/Projet_theses_france
- * requirements.txt
Size: 2.38 MB - Last synced: 12 months ago - Pushed: 12 months ago
nrosed/buddi Fork of greenelab/buddi
BuDDI model implementation- ==0.8.0 setup.py
Size: 53.6 MB - Last synced: about 2 months ago - Pushed: about 2 months ago
FlorianK13/open-MaStR Fork of OpenEnergyPlatform/open-MaStR
A collaborative software to download the energy database Marktstammdatenregister (MaStR)- * postprocessing/requirements_pp.txt
Size: 32.1 MB - Last synced: about 2 months ago - Pushed: about 2 months ago
renovate-tests/spapros Fork of theislab/spapros
Probe set selection for targeted spatial transcriptomics.- 0.6.1 poetry.lock
- ==0.6.1 requirements.txt
Size: 81.2 MB - Last synced: 8 months ago - Pushed: 8 months ago
ignaciot/DAStk Fork of Dowell-Lab/DAStk
Differential ATAC-seq toolkit- * setup.py
Size: 10.4 MB - Last synced: 8 months ago - Pushed: over 4 years ago
BradBalderson/Cytocipher_manuscript
Reproduces cytocipher manuscript results/figure panels.- * requirements.txt
Size: 110 MB - Last synced: 8 months ago - Pushed: about 1 year ago
kevwilhelm95/CriteriaForSuccess
The aggregation of Lichtarge Lab genotype-phenotype validation experiments- ==0.6.0 environment.yml
Size: 7.25 MB - Last synced: 6 months ago - Pushed: 8 months ago
Nicolascard995/MissingValue
- ==0.6.1 requirements.txt
Size: 6.27 MB - Last synced: 6 months ago - Pushed: 6 months ago
sequana/fastqc
sequana pipeline to perform parallel fastqc and summarize results with multiqc plot- 0.8.0 poetry.lock
Size: 2.36 MB - Last synced: 12 days ago - Pushed: 20 days ago
xiaosaiyao/epiregulon.sequence.modeling
- ==0.8.0 environment.yml
Size: 463 MB - Last synced: 6 months ago - Pushed: 6 months ago
Tuks-ICMM/Pharmacogenetic-Analysis-Pipeline
A Snakemake powered pipeline developed to perform variant-effect-prediction and frequency analysis given multiple Variant Call Format datasets. This has been developed in partial fulfilment of a MSc in Bioinformatics at the University of Pretoria by Graeme Ford.- ==0.8.0 requirements.deb.txt
- * requirements.in
- ==0.8.0 requirements.win.txt
Size: 65.7 MB - Last synced: about 1 month ago - Pushed: about 1 month ago