venn | pypi | Package Usage | Ecosyste.ms: Repos

broadinstitute/CCLF_TWIST

A pipeline to compute the CN, SNV, ... on TWIST sequences from the CCLF program

==0.1.3 requirements.txt

Size: 7.27 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago

SuLab/Wikidata-phenomizer

Incorporate wikidata statements into phenomizer

==0.1.3 Replicating_Phenomizer_Results/requirements.txt

Size: 137 KB - Last synced: about 1 month ago - Pushed: over 1 year ago

opensafely-core/python-docker

Image for running python in OpenSAFELY environments

* requirements.in
==0.1.3 requirements.txt

Size: 184 KB - Last synced: about 1 month ago - Pushed: 6 months ago

MaayanLab/appyter-catalog

A catalog of appyter notebooks

* appyters/CompareSets/requirements.txt

Size: 209 MB - Last synced: 24 days ago - Pushed: 3 months ago

greenelab/mpmp

Multimodal Pan-cancer Mutation Prediction

==0.1.3 environment.yml

Size: 82.4 MB - Last synced: 9 months ago - Pushed: almost 2 years ago

opensafely-core/jupyter-docker 📦

A temporary solution to running jupyter in OS environments

* requirements.in
==0.1.3 requirements.txt

Size: 46.9 KB - Last synced: about 1 month ago - Pushed: about 2 years ago

singleron-RD/CeleScope

Single Cell Analysis Pipelines

* requirements.txt

Size: 9.38 MB - Last synced: 4 days ago - Pushed: 4 days ago

fstanek/imp-x-fdr

https://doi.org/10.1101/2021.10.21.465295

* IMP_X_FDR/Resources/requirements.txt

Size: 63.2 MB - Last synced: 12 months ago - Pushed: over 1 year ago

BioComputingUP/CAID

Critical Assessment of Intrinsic Disorder

* Pipfile
==0.1.3 Pipfile.lock

Size: 112 MB - Last synced: 2 months ago - Pushed: over 1 year ago

BalayogiG/Venn-Diagram-App

A streamlit application for venn diagram generation using python packages. The packages used are venn, matplotlib, pandas and streamlit.

==0.1.3 requirements.txt

Size: 9.77 KB - Last synced: 7 months ago - Pushed: almost 2 years ago

ingredio/NLP_utils

==0.1.3 data_mining/requirements.txt

Size: 255 KB - Last synced: about 1 year ago - Pushed: about 1 year ago

Hasselfrau/serving_your_model

Exercise with Flask and Heroku

==0.1.3 requirements.txt

Size: 5.86 KB - Last synced: about 1 year ago - Pushed: over 3 years ago

BiomedicalMachineLearning/Medulloblastoma

==0.1.3 requirements.txt

Size: 12.9 MB - Last synced: 14 days ago - Pushed: about 1 year ago

grahamdelafield/pgc-glycosylation-lfq

Repository containing code to recreate figures and supplemental tables found in publication 10.1021/jasms.2c00249.

==0.1.3 requirements.txt

Size: 78.9 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

opensafely-actions/cohort-report

Cohort-report generates a report for each variable in an input file

==0.1.3 requirements.dev.txt

Size: 8.17 MB - Last synced: about 1 month ago - Pushed: about 2 years ago

lingjunli-research/pgc-glycosylation-lfq

Data and code needed to recreate plots for manuscript doi.org/10.1021/jasms.2c00249.

==0.1.3 requirements.txt

Size: 78.6 MB - Last synced: about 1 year ago - Pushed: about 1 year ago

JinyuanSun/DDGScan

DDGScan: an integrated parallel workflow for the in silico point mutation scan of protein

==0.1.3 requirements.txt
* setup.py
==0.1.3 environment.yml

Size: 7.24 MB - Last synced: 2 months ago - Pushed: 2 months ago

boostcampaitech3/final-project-level3-recsys-01

final-project-level3-recsys-01 created by GitHub Classroom

==0.1.3 data/data-preprocessing/requirements.txt
==0.1.3 model/FM/requirements.txt

Size: 61.9 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago

opensafely-actions/safetab

Safetab outputs two-way tables of descriptive statistics

==0.1.3 requirements.dev.txt

Size: 234 KB - Last synced: about 1 month ago - Pushed: over 2 years ago

BloxOne Threat Defense integration with Fortinet and Palo Alto domain names and IPs brings an even wider IOC coverage by threat intelligence unification. Fortinet IOCs are enforced at DNS level globally on all DNS even for roaming users who have not established their VPN

* requirements.txt

Size: 857 KB - Last synced: about 1 year ago - Pushed: over 2 years ago

yashpatel5400/umich_caid

CAID investigation

* caid_rep/CAID-root/caid/Pipfile
==0.1.3 caid_rep/CAID-root/caid/Pipfile.lock

Size: 5.94 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago

AldiandyaIrsyad/tetris-capstone

Capstone for Tetris Bootcamp Batch 2 by DQLab

* requirements.txt

Size: 342 KB - Last synced: about 1 month ago - Pushed: almost 2 years ago

Triansh/Mineral-data-collection

==0.1.3 requirements.txt

Size: 85.3 MB - Last synced: about 1 year ago - Pushed: over 2 years ago

jkobject/genepy

A list of awesome files for computational biologists

==0.1.3 requirements.txt
* setup.py

Size: 23.8 MB - Last synced: 16 days ago - Pushed: 4 months ago

colav/WOSplus

Merge bibliographic data bases

* requirements-dev.txt
* requirements.txt
* setup.py

Size: 492 KB - Last synced: 16 days ago - Pushed: almost 5 years ago

sxie04/appyter-catalog Fork of MaayanLab/appyter-catalog

A catalog of appyter notebooks

* appyters/CompareSets/requirements.txt

Size: 183 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

bu-neuromics/cte_mrnaseq_processing

* requirements.txt

Size: 9.63 MB - Last synced: over 1 year ago

EsraaHazem/Real-and-Fake-names-classifier

==0.1.3 Docker/requirements.txt

Size: 310 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

CaicedoLab/2023_Moshkov_NatComm

Predicting assays Using Morphological Analysis

* requirements.txt

Size: 4.72 MB - Last synced: 9 months ago - Pushed: about 1 year ago

wuqi21/CeleScope Fork of singleron-RD/CeleScope

Single Cell Analysis Pipelines

* requirements.txt

Size: 9.14 MB - Last synced: about 1 month ago - Pushed: 12 months ago

vuductung/proteomics-downstream-analysis

Data analysis tools for proteomics output data

==0.1.3 requirements.txt
* setup.py

Size: 1.35 MB - Last synced: 16 days ago - Pushed: 19 days ago

CompbioLabUnist/BME282

Introduction to Genomics

==0.1.3 Docker/requirements_jupyter.txt
==0.1.3 Docker/requirements.txt

Size: 49.8 KB - Last synced: 7 months ago - Pushed: 7 months ago

clinical-data-mining/cdm-utilities

Common functions used acrosss projects

* requirements.txt

Size: 4.5 MB - Last synced: 3 months ago - Pushed: 3 months ago

moritzschaefer/moritzsphd_pub

==0.1.3 setup.py

Size: 27.3 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago

grahamdelafield/Commons

Common classes, tools and functions used in my day-to-day work

* requirements.txt

Size: 3.57 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

007gzs/test

* requirements.txt

Size: 1.6 MB - Last synced: 5 months ago - Pushed: 5 months ago

grahamdelafield/Example_Quant_Discov_MS

* commons/requirements.txt
==0.1.3 requirements.txt

Size: 401 KB - Last synced: about 1 year ago - Pushed: over 3 years ago

Timothysit/mecp2

Discovering developmental differences in Mecp2 deficient neural networks

=0.1.3=pypi_0 python/spike-detection-dashboard/requirements.txt

Size: 21.3 MB - Last synced: 7 months ago - Pushed: almost 3 years ago

rapaperro88/Image-Classification-Unsupervised

==0.1.3 requirements.txt

Size: 42.8 MB - Last synced: about 1 year ago - Pushed: over 3 years ago

tmcarvalho/Privacy-Utility-TradeOff

* requirements.txt

Size: 6.72 MB - Last synced: about 1 year ago - Pushed: over 2 years ago

mlopatka/CANOSP2020

[staging] CANOSP project repo for January 2020 cohort

* environment.yml

Size: 50.5 MB - Last synced: 25 days ago - Pushed: about 4 years ago

anonymousprojs/COCO-2024

This is the repository of our paper: Robustness Testing of Code Generation Systems via Concretizing Descriptions

==0.1.3 requirements.txt

Size: 3.69 MB - Last synced: 5 months ago - Pushed: 5 months ago

andre15silva/mufin

==0.1.13 src/requirements.txt

Size: 87.4 MB - Last synced: 25 days ago - Pushed: about 1 year ago

anschauf/code-scout-python

* requirements.txt

Size: 100 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

gu-yaowen/MilGNet

MilGNet: Deep Multiple Instance Learning on Heterogeneous Graph for Drug-disease Association Prediction

==0.1.3 requirements.txt

Size: 64.5 MB - Last synced: 11 days ago - Pushed: 5 months ago

litao1503/Analysis_script_for_fast_growing_bamboo_shoot_datasets

=0.1.3 environment.yml

Size: 12.6 MB - Last synced: 11 months ago - Pushed: 11 months ago

nmank/ModuleRefinement

Code for Module representatives for refining gene co-expression modules

==0.1.3 requirements.txt

Size: 98.1 MB - Last synced: 12 months ago - Pushed: 12 months ago

GenomicsNX/appyter-catalog Fork of MaayanLab/appyter-catalog

A catalog of appyter notebooks

* appyters/CompareSets/requirements.txt

Size: 120 MB - Last synced: about 2 months ago - Pushed: about 3 years ago

panernie/DDGScan Fork of JinyuanSun/DDGScan

Scripts and facilities for in-silico mutagenesis with FoldX, Rosetta and ABAUCS1/2

==0.1.3 requirements.txt
* setup.py

Size: 5.17 MB - Last synced: about 1 month ago - Pushed: about 2 years ago

JieZhou8221/Colorectal-Cancer-Survival-Analysis

A pipeline for survival analysis using machine learning models

==0.1.3 environment.yml

Size: 21.1 MB - Last synced: 10 months ago - Pushed: 10 months ago

bhiaibogf/wallpaper-engine-backup

A python script to backup deleted wallpapers

==0.1.3 requirements.txt

Size: 23.4 KB - Last synced: 10 months ago - Pushed: about 2 years ago

nadhirahaifa/tetris3-capstone

* requirements.txt

Size: 19.5 KB - Last synced: 12 months ago - Pushed: 12 months ago

biocheming/DDGScan Fork of JinyuanSun/DDGScan

Scripts and facilities for in-silico mutagenesis with FoldX, Rosetta and ABAUCS1/2

==0.1.3 environment.yml
==0.1.3 requirements.txt
* setup.py

Size: 7.22 MB - Last synced: 9 months ago - Pushed: over 1 year ago

das2000sidd/genepy Fork of broadinstitute/genepy

Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python

* requirements.txt
* setup.py

Size: 17.4 MB - Last synced: 9 months ago - Pushed: about 3 years ago

das2000sidd/depmap_omics Fork of broadinstitute/depmap_omics

What you need to process the Quarterly DepMap-Omics releases from Terra

==0.1.3 requirements.txt

Size: 243 MB - Last synced: 9 months ago - Pushed: about 3 years ago

shizhan1109/security-patches-dataset Fork of TQRG/security-patches-dataset

☠️ Ground-truth dataset for vulnerability prediction (known research datasets and data sources included such as NVD, CVE Details and OSV); tools to automatically update the data are provided.

* requirements.txt

Size: 123 MB - Last synced: 9 months ago - Pushed: 9 months ago

homjason/appyter-catalog Fork of MaayanLab/appyter-catalog

A catalog of appyter notebooks

* appyters/CompareSets/requirements.txt

Size: 94.4 MB - Last synced: 9 months ago - Pushed: almost 4 years ago

xuguowong/HouYi-LLM Fork of LLMSecurity/HouYi

The automated prompt injection framework for LLM-integrated applications.

* requirements.txt

Size: 16.6 KB - Last synced: 9 months ago - Pushed: 9 months ago

lachmann12/appyter-catalog Fork of MaayanLab/appyter-catalog

A catalog of appyter notebooks

* appyters/CompareSets/requirements.txt

Size: 120 MB - Last synced: about 1 month ago - Pushed: over 3 years ago

skqxys/TRACR_RNA Fork of skDooley/TRACR_RNA

==0.1.3 environment.yml

Size: 47.2 MB - Last synced: 8 months ago - Pushed: almost 3 years ago

GCCR/GCCR002

Codebase for "Recent smell loss is the best predictor of COVID-19: a preregistered, cross-sectional study" by Gerkin et al 2020

==0.1.3 environment.yml

Size: 6.41 MB - Last synced: 28 days ago - Pushed: over 3 years ago

PostoenkoVI/IQMMA

Project improves quantitative analysis by applying multiple feature detection tools and pick the best from their results.

* requirements.txt

Size: 579 KB - Last synced: 21 days ago - Pushed: about 2 months ago

bigbio/quantms.io

The proteomics quantification format, extending mzTab for large scale datasets.

* python/quantmsio/requirements.txt

Size: 143 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

madavanvasudevan/THANKS

THEOMICS ANALYTICAL KIT FOR SCIENCE

==0.1.3 requirements.txt

Size: 894 KB - Last synced: about 2 months ago - Pushed: about 2 months ago

CompbioLabUnist/Helixco_Premature

==0.1.3 jwlee230/Program/Docker/requirements.txt

Size: 1.29 GB - Last synced: 6 months ago - Pushed: 6 months ago

lorenzo-arcioni/BioSwiftAnalytics

BioSwiftAnalytics represents a robust software solution designed to empower researchers in seamlessly deciphering the intricacies of biological data.

* requirements.txt

Size: 100 MB - Last synced: 8 days ago - Pushed: 9 days ago

vturlin/trelloapp

* requirements.txt

Size: 29.3 KB - Last synced: 6 months ago - Pushed: 6 months ago

lorenzo-arcioni/BUSCO-Plot-Py

A Python library for BUSCO data visualization.

==0.1.3 requirements.txt

Size: 42.2 MB - Last synced: 2 months ago - Pushed: 5 months ago

M-Nisar-07/ciods_app

==0.1.3 app/requirements.txt

Size: 122 MB - Last synced: 6 months ago - Pushed: 6 months ago

IBPA/FoodAtlas

==0.1.3 requirements.txt

Size: 231 MB - Last synced: 2 months ago - Pushed: 4 months ago

less-lab-uva/s3c

==0.1.3 requirements.txt

Size: 47.8 MB - Last synced: about 1 month ago - Pushed: 4 months ago

DeCartography/decartography

==0.1.3 backend/requirements.txt

Size: 76.3 MB - Last synced: 4 months ago - Pushed: 4 months ago

esriram/Program-Repair

==0.1.13 Bug A/Algo/mufin-main/mufin-main/src/requirements.txt

Size: 142 MB - Last synced: 5 months ago - Pushed: 5 months ago

openkinome/kinodata

Collection of scripts / notebooks to reliably select datasets

* devtools/environment.yml

Size: 5.44 MB - Last synced: 4 months ago - Pushed: 4 months ago

ursueugen/cross-species-linear-models

Cross-species linear models analysis of gene expression and pathways enrichment association with mammalian maximum lifespan (MLS) and other species traits.

==0.1.3 environment.yml

Size: 25.4 KB - Last synced: 4 months ago - Pushed: over 3 years ago

LLMSecurity/HouYi

The automated prompt injection framework for LLM-integrated applications.

* requirements.txt

Size: 35.2 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

Chenjunjie1996/Celescope_LeadsBio

* requirements.txt

Size: 7.39 MB - Last synced: 3 months ago - Pushed: 3 months ago

valeriobasile/PersEval

A benchmark for Perspectivist models of NLU

==0.1.3 requirements.txt

Size: 34.2 KB - Last synced: 12 days ago - Pushed: 12 days ago

vera-pro/Dutch-NER-LT4HALA

Code for the paper "Too Young to NER: Improving Entity Recognition on Dutch Historical Documents", accepted to the LT4HALA workshop at LREC-COLING '24