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Bitbucket.org / benfogelson / stressfibermodels
This repository provides application code for solving the model equations for force generation in contractile fibers as described in Fogelson, B., & Mogilner, A. (2018). Actin-Myosin Force Generation and Symmetry Breaking in the Model Contractile Fiber. SIAM Journal on Applied Mathematics, 78(3), 1754–1777. https://doi.org/10.1137/17M1112261
JSON API: https://repos.ecosyste.ms/api/v1/hosts/Bitbucket.org/repositories/benfogelson%2Fstressfibermodels
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License: None
Language: python
Repo Size: 1.83 MB
Dependencies:
158
Created: over 10 years ago
Updated: about 5 years ago
Last synced: over 1 year ago
Files
Dependencies
- Click *
- NeuroTools *
- Sumatra *
- matplotlib *
- numpy *
- scipy *
- Canopy ==1.4.0.dev6600
- Cython ==0.19.1
- DataExtract ==8200.14.0819.2015
- DerApproximator ==0.502
- Django ==1.5.12
- Examples ==7.3
- FiPy ==3.0
- FuncDesigner ==0.5082
- GitPython ==0.2.0
- Jinja2 ==2.7.3
- MKL ==10.3
- MarkupSafe ==0.23
- NeuroTools ==0.2.0
- PIL ==1.1.7
- PyBrain ==0.3
- PyML ==0.7.13.3
- PyNN ==0.7.5
- PyScons ==1.0.87
- PySide ==1.2.2
- PyYAML ==3.11
- Pyevolve ==0.5
- Pygments ==2.0.2
- PythonDoc ==2.7.3
- Qt ==4.8.5
- SpaceFuncs ==0.504
- Sumatra ==0.5.3
- VTK ==5.10.1
- ViTables ==2.1
- altgraph ==0.10.2
- appdirs ==1.4.0
- appinst ==2.1.2
- apptools ==4.2.1
- argparse ==1.2.1
- astroid ==1.0.1
- async ==0.6.1
- atom ==0.3.9
- binaryornot ==0.3.0
- biopython ==1.63
- bitarray ==0.8.1
- casuarius ==1.1
- chaco ==4.5.0
- click ==3.3
- cloud ==2.4.6
- configobj ==5.0.6
- cookiecutter ==0.9.1
- coverage ==3.7.1
- deap ==0.9.1
- decorator ==4.0.6
- distribute ==0.7.3
- django-tagging ==0.3.4
- docutils ==0.12
- enable ==4.4.1
- enaml ==0.9.8
- encore ==0.6.0
- enstaller ==4.8.1
- envisage ==4.4.0
- esky ==0.9.8dev
- etsproxy ==0.1.2
- faulthandler ==2.4
- feedparser ==5.1.3
- freetype ==2.5.3
- gitdb ==0.5.4
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- greenlet ==0.4.1
- grits-client ==0.1
- httplib2 ==0.9
- idle ==2.7.3
- ipython ==2.3.1
- joblib ==0.7.1
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- kernmagic ==0.2.0
- keyring ==3.6dev
- kiwisolver ==0.1.3
- libjpeg ==7.0
- libpng ==1.6.12
- logilab-common ==0.60.1
- macholib ==1.5.1
- matplotlib ==1.4.2
- mayavi ==4.3.1
- mock ==1.0.1
- modulegraph ==0.10.4
- mpi4py ==1.3.1
- networkx ==1.8.1
- nose ==1.3.4
- nose2 ==0.5.0
- numexpr ==2.2.1
- numpy ==1.9.1
- openopt ==0.509
- pandas ==0.15.2
- parameters ==0.2.1
- petsc4py ==3.5.1
- ply ==3.4
- pony ==0.6
- psutil ==2.2.0
- py ==1.4.31
- py2app ==0.7.3
- pyamg ==2.0.5.dev
- pycuda ==2015.1.3
- pyface ==4.4.0
- pyfann ==2.0.0
- pyflakes ==0.8.1
- pyglet ==1.1.4
- pylint ==1.1.0
- pyparsing ==2.0.1
- pysparse ==1.2.dev213
- pytest ==2.8.5
- python-dateutil ==2.2.0
- pytools ==2015.1.6
- pytz ==2014.9.0
- pyzmq ==14.5.0
- readline ==6.2.1
- recordtype ==1.1
- requests ==2.5.1
- scikit-learn ==0.15.2
- scipy ==0.14.1rc1
- scons ==2.3.3
- scoop ==0.6.2.release
- setproctitle ==1.1.7
- shiboken ==1.2.2
- simplejson ==3.6.5
- simulationtools ==0.1.0
- six ==1.10.0
- smmap ==0.8.2
- ssl-match-hostname ==3.4.0.2
- supplement ==0.5dev.dev202
- sympy ==0.7.6
- tables ==3.0.0
- tornado ==4.0.2
- traits ==4.5.0
- traitsui ==4.4.0
- treedict ==0.14
- virtualenv ==13.1.2
- weakrefset ==1.0.0
- wsgiref ==0.1.2
- wxPython ==2.9.2.4
- xlrd ==0.9.3
- xlutils ==1.7.1
- xlwt ==0.7.5
- zeromq ==4.0.5
- GitPython ==2.1.7
- PyYAML ==3.12
- Sumatra ==0.7.4
- contextlib2 ==0.5.5
- jupyter ==1.0.0
- matplotlib ==2.1.0
- numpy ==1.13.3
- pandas ==0.21.0
- petsc4py ==3.7.0
- pypet ==0.4.2
- scipy ==1.0.0
- seaborn ==0.8.1
- stressfiber ==0.1