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GitHub / ACastanza 5 Repositories

Curator, Molecular Signatures Database (MSigDB) Mesirov Lab, Department of Medicine University of California, San Diego

ACastanza/PvpAlerts

Patching Miat's PvP Alerts for ESO to Keep Compatibility

Language: Lua - Size: 3.94 MB - Last synced at: about 1 month ago - Pushed at: about 2 months ago - Stars: 4 - Forks: 1

ACastanza/ActionBarSkillStyles

Enable Skill Style Overrides for Action Bar Icons

Language: Lua - Size: 7.81 KB - Last synced at: 3 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0

ACastanza/PotionTakenSoundFix Fork of Trader08/PotionTakenSoundFix

ESO addon

Language: Lua - Size: 71.3 KB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0

ACastanza/CombatMetronomeUpdated

Bugfixes for Combat Metronome (GCD Tracker) Update by barny

Language: Lua - Size: 46.9 KB - Last synced at: about 2 months ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

ACastanza/LuiExtended Fork of ArtOfShred/LuiExtended

Lui Extended addon for ESO

Language: Lua - Size: 95.5 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

ACastanza/wizardswardrobe Fork of nicokimmel/wizardswardrobe

Throw all your setups into the wardrobe and let the wizard equip them exactly when you need it. 🧙

Language: Lua - Size: 345 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

ACastanza/KillCounter-ESO-Addon Fork of Casterial/KillCounter-ESO-Addon

https://www.esoui.com/downloads/info1690-KillCounter-5.0.5ElsweyrNecromancerIncluded.html

Language: Lua - Size: 164 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

ACastanza/LLM_testing_data

Size: 21.3 MB - Last synced at: 11 days ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

ACastanza/WP4MSigSB Fork of mkutmon/WP4MSigSB

WikiPathways GMT for MSigDB

Language: Java - Size: 190 KB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

ACastanza/genepattern-python Fork of genepattern/genepattern-python

GenePattern Python Library

Size: 183 KB - Last synced at: about 2 years ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0

ACastanza/STAR.aligner Fork of genepattern/STAR.aligner

STAR RNA-seq aligner wrapper for GenePattern

Size: 1.76 MB - Last synced at: about 2 years ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0

ACastanza/ProvisionsTeamFormation_PatchDev 📦

ProvisionsTeamFormation with my personal adjustments

Language: Lua - Size: 80.1 KB - Last synced at: 3 months ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

ACastanza/GSEA_R Fork of GSEA-MSigDB/GSEA_R

Updated implementation of the GSEA-P R application for modern R distributions

Language: R - Size: 2.64 MB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

ACastanza/TCGA.SampleSelection Fork of genepattern/TCGA.SampleSelection

TCGA.SampleSelection wrapper module for GenePattern.

Language: R - Size: 16.8 MB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

ACastanza/ssGSEApy

Python port of ssGSEA

Language: Python - Size: 21.5 KB - Last synced at: 3 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

ACastanza/workshop-notebooks Fork of g2nb/workshop-notebooks

Jupyter notebooks intended for g2nb workshops

Size: 0 Bytes - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

ACastanza/tutorial-notebooks Fork of g2nb/tutorial-notebooks

Jupyter notebooks for the g2nb project

Size: 1000 Bytes - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

ACastanza/julia Fork of JuliaLang/julia

The Julia Programming Language

Size: 210 MB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

ACastanza/tximport.DESeq2

tximport.DESeq2 wrapper module for GenePattern.

Language: R - Size: 67 MB - Last synced at: 3 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 1

ACastanza/Salmon.Alevin.Quant

Salmon Alevin (single cell) quantification wrapper module for GenePattern.

Language: Shell - Size: 792 KB - Last synced at: 30 days ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 1

ACastanza/Salmon.Quant

Salmon quantification wrapper module for GenePattern.

Language: Shell - Size: 1.39 MB - Last synced at: 3 months ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 1

ACastanza/ssGSEA-gpmodule Fork of GSEA-MSigDB/ssGSEA-gpmodule

A GenePattern module for running the ssGSEA method

Language: R - Size: 1.71 MB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

ACastanza/scVelo.ComputeVelocity

scVelo wrapper module for GenePattern

Language: Python - Size: 23.1 MB - Last synced at: 3 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 1

ACastanza/PreprocessVelocityTranscriptome

Transcriptome preprocessing for RNA Velocity wrapper module for GenePattern.

Language: R - Size: 793 KB - Last synced at: 3 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 1

ACastanza/ScanpyQC

Genepattern wrapper module for ScanpyQC

Language: Python - Size: 14.6 KB - Last synced at: about 2 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 1

ACastanza/Salmon.Indexer Fork of genepattern/Salmon.Indexer

Salmon indexer wrapper module for GenePattern.

Size: 74.6 MB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

ACastanza/ScanpyUtilities Fork of genepattern/ScanpyUtilities

Single-cell preprocessing (annotation and filtering) GenePattern module using Scanpy

Size: 147 MB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

ACastanza/10x.Results.To.Velocity.Loom

Wrapper script for a GenePattern module to create a velocity compatible loom file from single cell bam files

Language: Shell - Size: 6.84 KB - Last synced at: 3 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

ACastanza/Convert.10xBAM.to.FASTQ

10x bamtofastq wrapper module for GenePattern

Language: Shell - Size: 10.7 MB - Last synced at: 3 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

ACastanza/CellRank.FateMap

CellRank wrapper module for GenePattern

Language: Python - Size: 15.6 KB - Last synced at: 26 days ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

ACastanza/DESeq2 Fork of genepattern/DESeq2

A Differential Expression workflow for RNA-Seq data based on the DESeq2 package from Bioconductor

Language: R - Size: 3.81 MB - Last synced at: over 2 years ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

ACastanza/Convert.Alevin

Convert alevin wrapper module for GenePattern.

Language: Python - Size: 37.4 MB - Last synced at: 3 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 1

ACastanza/ssGSEA_ROC

Language: R - Size: 334 KB - Last synced at: 3 months ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 1

ACastanza/conos Fork of kharchenkolab/conos

R package for the joint analysis of multiple single-cell RNA-seq datasets

Size: 256 MB - Last synced at: over 2 years ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

ACastanza/Conos.Preprocess Fork of genepattern/Conos.Preprocess

Read, preprocess, and project data using Conos (step 1/3)

Size: 64.5 KB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

ACastanza/Conos.Cluster Fork of genepattern/Conos.Cluster

Clustering using Conos (part 2/3)

Size: 26.4 KB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

ACastanza/vpolo Fork of k3yavi/vpolo

To remember what have been lost !

Language: Python - Size: 81.1 KB - Last synced at: over 2 years ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0

ACastanza/velocyto_preprocessbam

Wrapper script for preprocessing BAM files for analysis with velocyto in GenePattern

Language: Dockerfile - Size: 1.95 KB - Last synced at: about 2 months ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0

ACastanza/ensembl-tools Fork of Ensembl/ensembl-tools

Ensembl tools

Size: 1.15 MB - Last synced at: over 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

ACastanza/ROC.Predict

Phenotype prediction using ssGSEA_ROC results

Language: R - Size: 8.79 KB - Last synced at: 3 months ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

ACastanza/ConstellationMap Fork of genepattern/ConstellationMap

A downstream visualization and analysis tool for gene set enrichment results with interactive web visualizer

Language: R - Size: 1.49 MB - Last synced at: over 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

ACastanza/RSeQC.infer_experiment

RSeQC.infer_experiment wrappers for GenePattern.

Language: Python - Size: 101 KB - Last synced at: 3 months ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

ACastanza/Join.Files

Simple file joiner for GenePattern.

Language: R - Size: 88.9 KB - Last synced at: 3 months ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

ACastanza/DESeq2.Normalize

Wrapper for DESeq2 based normalization-only module.

Language: R - Size: 9.77 KB - Last synced at: 3 months ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

ACastanza/anndata Fork of scverse/anndata

Annotated data.

Language: Python - Size: 1.49 MB - Last synced at: over 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

ACastanza/tximeta Fork of mikelove/tximeta

Transcript Quantification Import with Automatic Metadata

Size: 1.27 MB - Last synced at: over 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

ACastanza/AffySTExpressionFileCreator Fork of genepattern/AffySTExpressionFileCreator

Creates a GCT file from a set of CEL files from Affymetrix ST arrays.

Language: R - Size: 17.3 MB - Last synced at: over 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

ACastanza/GEOImporter Fork of genepattern/GEOImporter

Imports data from the Gene Expression Omnibus (GEO)

Language: R - Size: 16.1 MB - Last synced at: over 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

ACastanza/seqformat

RNA-seq Preprocessing for GSEA

Language: R - Size: 6.04 MB - Last synced at: 3 months ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 0

ACastanza/pagoda2 Fork of kharchenkolab/pagoda2

R package for analyzing and interactively exploring large single-cell RNA-seq datasets

Language: JavaScript - Size: 10.6 MB - Last synced at: over 2 years ago - Pushed at: about 6 years ago - Stars: 0 - Forks: 0

ACastanza/msigdbr Fork of igordot/msigdbr

MSigDB Gene Sets for Multiple Organisms in a Tidy Data Format

Size: 12.4 MB - Last synced at: over 2 years ago - Pushed at: almost 6 years ago - Stars: 0 - Forks: 0

ACastanza/GSEA_R_old

Revisions to the GSEA-P R Application (Subramanian and Tamayo et al 2005)

Language: R - Size: 10.6 MB - Last synced at: about 2 months ago - Pushed at: almost 6 years ago - Stars: 0 - Forks: 1

ACastanza/SmartThingsPublic Fork of SmartThingsCommunity/SmartThingsPublic

SmartThings open-source DeviceTypeHandlers and SmartApps code

Language: Groovy - Size: 11.7 MB - Last synced at: over 2 years ago - Pushed at: about 6 years ago - Stars: 0 - Forks: 0