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GitHub / kharchenkolab / pagoda2
R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/kharchenkolab%2Fpagoda2
Stars: 191
Forks: 47
Open Issues: 0
License: None
Language: JavaScript
Repo Size: 78.4 MB
Dependencies:
53
Created: about 7 years ago
Updated: 27 days ago
Last pushed: 3 months ago
Last synced: 17 days ago
Commit Stats
Commits: 1303
Authors: 16
Mean commits per author: 81.44
Development Distribution Score: 0.555
More commit stats: https://commits.ecosyste.ms/hosts/GitHub/repositories/kharchenkolab/pagoda2
Topics: scrna-seq, single-cell, single-cell-rna-seq, transcriptomics
Files
Dependencies
- Matrix * depends
- R >= 3.5.0 depends
- igraph * depends
- MASS * imports
- N2R * imports
- R.utils * imports
- R6 * imports
- RMTstat * imports
- Rcpp * imports
- Rook * imports
- Rtsne * imports
- dendsort * imports
- drat * imports
- fastcluster * imports
- grDevices * imports
- graphics * imports
- irlba * imports
- magrittr * imports
- methods * imports
- mgcv * imports
- parallel * imports
- plyr * imports
- rjson * imports
- rlang * imports
- sccore >= 0.1.1 imports
- stats * imports
- urltools * imports
- utils * imports
- AnnotationDbi * suggests
- BiocGenerics * suggests
- BiocParallel * suggests
- GO.db * suggests
- KernSmooth * suggests
- base64enc * suggests
- colorRamps * suggests
- data.table * suggests
- dbscan * suggests
- dplyr * suggests
- ggplot2 * suggests
- gridExtra * suggests
- knitr * suggests
- org.Dr.eg.db * suggests
- org.Hs.eg.db * suggests
- org.Mm.eg.db * suggests
- pcaMethods * suggests
- pheatmap * suggests
- rgl * suggests
- rmarkdown * suggests
- robustbase * suggests
- scde * suggests
- testthat * suggests
- uwot * suggests
- rocker/tidyverse 4.0.1 build