igraph | cran | Package Usage | Ecosyste.ms: Repos

tidytranscriptomics-workshops/ismb2021_tidytranscriptomics

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Size: 29.5 MB - Last synced: 9 months ago - Pushed: over 2 years ago

skdeshpande91/flexBART

Towards a more flexible BART

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Size: 176 MB - Last synced: 1 day ago - Pushed: 1 day ago

Jtrachsel/pdtools

Functions for working with NCBI's Pathogen Detection data

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Size: 6.51 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

mil2041/netboxr

An R package to mark functional modules in the network analysis using data from pathwayCommons

>= 1.2.4.1 DESCRIPTION

Size: 48.7 MB - Last synced: 7 months ago - Pushed: 12 months ago

angelolab/FlowSOM Fork of SofieVG/FlowSOM

Using self-organizing maps for visualization and interpretation of cytometry data

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Size: 22.5 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago

franzbischoff/recipes Fork of tidymodels/recipes

Pipeable steps for feature engineering and data preprocessing to prepare for modeling

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Size: 60.1 MB - Last synced: 2 days ago - Pushed: 2 days ago

ZhimingYe/BioThemeFinder

to Find all the Biological Themes

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Size: 3.47 MB - Last synced: 3 months ago - Pushed: about 1 year ago

KULeuven-PPW-OKPIV/C443

C443: See a Forest for the Trees

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Size: 219 KB - Last synced: 6 months ago - Pushed: 11 months ago

plotly/plotly.r-docs

The documentation for Ploty's R graphing library.

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Size: 27.5 MB - Last synced: 23 days ago - Pushed: 8 months ago

vibscc/DALI

R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem

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Size: 8.95 MB - Last synced: about 2 months ago - Pushed: about 1 year ago

BRL-BCM/CTD

CTD method for “connecting the dots” in weighted graphs

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Size: 305 MB - Last synced: 6 months ago - Pushed: 6 months ago

ANTsX/ANTsR

R interface to the ANTs biomedical image processing library

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Size: 45.8 MB - Last synced: 14 days ago - Pushed: 23 days ago

cran/smart

:exclamation: This is a read-only mirror of the CRAN R package repository. smart — Sparse Multivariate Analysis via Rank Transformation

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Size: 148 KB - Last synced: 9 months ago - Pushed: about 10 years ago

MicrobiologyETHZ/phylloR

R package for phyllosphere analysis

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Size: 162 KB - Last synced: 6 months ago - Pushed: 9 months ago

supatt-lab/SingCellaR

an integrative analysis tool for analysing large-scale single cell RNA-sequencing data

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Size: 6.25 MB - Last synced: 7 months ago - Pushed: 9 months ago

rbas2015/CausalFX

CausalFX R Package

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Size: 224 KB - Last synced: about 1 year ago - Pushed: almost 9 years ago

geeklhem/rnetcarto

Fast network modularity and roles computation by simulated annealing (rgraph C library wrapper for R).

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Size: 209 KB - Last synced: 7 months ago - Pushed: over 8 years ago

cran/SubpathwayGMir

:exclamation: This is a read-only mirror of the CRAN R package repository. SubpathwayGMir — Identify Metabolic Subpathways Mediated by MicroRNAs

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Size: 1.77 MB - Last synced: 7 months ago - Pushed: almost 9 years ago

cran/RevEcoR

:exclamation: This is a read-only mirror of the CRAN R package repository. RevEcoR — Reverse Ecology Analysis on Microbiome

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Size: 919 KB - Last synced: 7 months ago - Pushed: about 8 years ago

nrennie/aRt

R package to create generative art.

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Size: 23.3 MB - Last synced: 6 months ago - Pushed: 6 months ago

wch/rgcookbook

R Graphics Cookbook

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Size: 2.89 MB - Last synced: 7 months ago - Pushed: about 1 year ago

gexijin/idepGolem

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Size: 5.08 MB - Last synced: 17 days ago - Pushed: 17 days ago

Sandy4321/fbRanks Fork of englianhu/fbRanks

Association Football (Soccer) Ranking via Poisson Regression

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Size: 637 KB - Last synced: about 1 year ago - Pushed: about 10 years ago

Sandy4321/bootfs Fork of cran/bootfs

Use multiple feature selection algorithms to derive robust

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Size: 773 KB - Last synced: about 1 year ago - Pushed: about 10 years ago

stocnet/migraph

Tools for multimodal and multilevel network analysis

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Size: 390 MB - Last synced: 5 days ago - Pushed: 5 days ago

Sandy4321/mRMRe Fork of cran/mRMRe

R package for parallelized mRMR ensemble feature selection

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Size: 6.47 MB - Last synced: about 1 year ago - Pushed: over 9 years ago

GangLiLab/genekitr

🧬 Gene analysis toolkit based on R

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Size: 83.1 MB - Last synced: 9 months ago - Pushed: 9 months ago

JHart96/bisonR

An R package for Bayesian Inference of Social Networks

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Size: 157 MB - Last synced: 9 months ago - Pushed: 9 months ago

ctbrownlees/R-Package-nets

R package nets

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Size: 116 KB - Last synced: 14 days ago - Pushed: over 3 years ago

bingjingtang/gclust

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Size: 608 KB - Last synced: about 2 months ago - Pushed: over 9 years ago

:exclamation: This is a read-only mirror of the CRAN R package repository. agop — Aggregation Operators and Preordered Sets. Homepage: https://github.com/gagolews/agop/ Report bugs for this package: https://github.com/gagolews/agop/issues

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Size: 534 KB - Last synced: 5 months ago - Pushed: 5 months ago

zhangjunpeng411/miRSM

miRSM: Inferring miRNA sponge modules by integrating expression data and miRNA-target binding information

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Size: 3.8 MB - Last synced: 16 days ago - Pushed: about 1 month ago

briandconnelly/bdcR

My personal R environment

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Size: 22.5 KB - Last synced: about 1 year ago - Pushed: almost 7 years ago

grunwaldlab/metacoder

Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data

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Size: 108 MB - Last synced: about 1 month ago - Pushed: 3 months ago

bwallace/OpenMeta-analyst-

intuitive software for advanced meta-analysis

* src/R/openmetar/DESCRIPTION

Size: 84.9 MB - Last synced: 7 months ago - Pushed: almost 4 years ago

schochastics/edgebundle

R package implementing edge bundling algorithms

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Size: 15 MB - Last synced: 8 days ago - Pushed: 2 months ago

chunquanli/DRWPClassGM

DRW-GM

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Size: 6.42 MB - Last synced: 7 months ago - Pushed: about 9 years ago

RoheLab/vsp

Vintage Sparse PCA for Semi-Parametric Network Analysis

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Size: 7.54 MB - Last synced: about 1 month ago - Pushed: 2 months ago

SachaEpskamp/bootnet

Bootstrap methods for various network estimation routines

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Size: 471 KB - Last synced: 13 days ago - Pushed: 3 months ago

etiennebr/visualraster

Illustrate some operations of the raster package

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Size: 2.6 MB - Last synced: about 1 month ago - Pushed: about 5 years ago

kerseviciute/aPEAR

Enrichment Networks for Pathway Enrichment Analysis

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Size: 4.99 MB - Last synced: 6 months ago - Pushed: about 1 year ago

raevskymichail/epi-impute

Epi-Impute: single-cell RNA-seq imputation via integration with single-cell ATAC-seq data

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Size: 56.3 MB - Last synced: 7 months ago - Pushed: 10 months ago

mlr-org/mlr3website

The mlr3 quarto website and accomanying R package.

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Size: 328 MB - Last synced: 7 days ago - Pushed: about 1 month ago

r4ds/bookclub-ggplot2

ggplot2 Book Club

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Size: 143 MB - Last synced: 24 days ago - Pushed: about 1 month ago

rickhelmus/patRoon

Workflow solutions for mass-spectrometry based non-target analysis.

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Size: 551 MB - Last synced: 1 day ago - Pushed: 1 day ago

broadinstitute/infercnv

Inferring CNV from Single-Cell RNA-Seq

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Size: 22.6 MB - Last synced: about 2 months ago - Pushed: 2 months ago

drieslab/Giotto

Spatial omics analysis toolbox

>= 1.2.4.1 DESCRIPTION

Size: 1.62 GB - Last synced: 4 days ago - Pushed: 4 days ago

stocnet/goldfish

Actor-oriented and tie-based network event models in R

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Size: 4.72 MB - Last synced: 23 days ago - Pushed: 26 days ago

rohan-shah/mpMap2

New version of mpMap

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Size: 11.8 MB - Last synced: 7 months ago - Pushed: almost 4 years ago

stefpeschel/NetCoMi

Network construction, analysis, and comparison for microbial compositional data

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Size: 16.7 MB - Last synced: 10 days ago - Pushed: 10 days ago

leifeld/dna

Discourse Network Analyzer (DNA)

>= 1.1.0 rDNA2/DESCRIPTION

Size: 158 MB - Last synced: about 2 months ago - Pushed: 2 months ago

cole-trapnell-lab/monocle-release

>= 1.0.1 DESCRIPTION

Size: 207 MB - Last synced: about 2 months ago - Pushed: almost 2 years ago

cran/micropan

:exclamation: This is a read-only mirror of the CRAN R package repository. micropan — Microbial Pan-Genome Analysis

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Size: 7.63 MB - Last synced: 7 months ago - Pushed: almost 4 years ago

YuLab-SMU/enrichplot

Visualization of Functional Enrichment Result

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Size: 655 KB - Last synced: 27 days ago - Pushed: 27 days ago

dputhier/scigenex

This repository stores the scigenex R library.

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Size: 57 MB - Last synced: about 1 month ago - Pushed: 3 months ago

satijalab/seurat-wrappers

Community-provided extensions to Seurat

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Size: 116 MB - Last synced: 5 days ago - Pushed: 6 days ago

DmitryVel/ALISTRA

Analysis of LIneage-Specific TRAjectories

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Size: 462 KB - Last synced: 8 months ago - Pushed: 8 months ago

anna-pacinkova/intomics_package

IntOMICS: an R package for integrative analysis of multi-omics data to infer regulatory networks.

* DESCRIPTION

Size: 2.06 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

ggobi/ggally

R package that extends ggplot2

>= 1.0.1 DESCRIPTION

Size: 381 MB - Last synced: 14 days ago - Pushed: 15 days ago

Hy4m/linkET

Everything is Linkable

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Size: 2.63 MB - Last synced: about 2 months ago - Pushed: 11 months ago

hfgolino/EGAnet

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Size: 108 MB - Last synced: 1 day ago - Pushed: 1 day ago

kaijagahm/vultureUtils

Utility functions for working with vulture data

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Size: 137 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

emabaci/Advanced-Statistics-Project

* bnstruct/DESCRIPTION

Size: 7.73 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago

cytoscape/RCy3

New version of RCy3, redesigned and collaboratively maintained by Cytoscape developer community

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Size: 19.4 MB - Last synced: 2 days ago - Pushed: about 1 month ago

npcooley/SynExtend

Tools for working with synteny objects

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Size: 19.2 MB - Last synced: 7 days ago - Pushed: 8 days ago

aarkilanian/dci

Calculates the dendritic connectivity index in river networks

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Size: 5.17 MB - Last synced: 3 months ago - Pushed: 3 months ago

abodein/CENetwork

Multi-Omics network exploration and visualisation

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Size: 29.6 MB - Last synced: 5 months ago - Pushed: 5 months ago

thomasp85/FindMyFriends

Fast alignment-free pangenome creation and exploration

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Size: 1.93 MB - Last synced: 7 months ago - Pushed: about 4 years ago

ncss-tech/sharpshootR

Miscellaneous soil data management, summary, visualization, and conversion utilities to support soil survey.

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Size: 36.8 MB - Last synced: about 16 hours ago - Pushed: 29 days ago

lazappi/clustree

Visualise Clusterings at Different Resolutions

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Size: 36.9 MB - Last synced: 29 days ago - Pushed: 6 months ago

swang87/bcp

Bayesian Analysis of Change Point Problems

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Size: 3.84 MB - Last synced: 7 months ago - Pushed: over 5 years ago

sigven/oncoEnrichR

Cancer-dedicated gene set interpretation

>= 1.2.6 DESCRIPTION

Size: 1.9 GB - Last synced: 7 months ago - Pushed: 8 months ago

egenn/rtemis

Advanced Machine Learning and Visualization

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Size: 7.41 MB - Last synced: 3 days ago - Pushed: 3 days ago

bioRgeo/bioRgeo

An R package to compare several methods of bioregionalizations

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Size: 86.4 MB - Last synced: about 1 year ago - Pushed: about 1 year ago

r-forge/raster

Read-only mirror of "raster" from r-forge SVN.

* pkg/raster/DESCRIPTION

Size: 6.14 MB - Last synced: 9 months ago - Pushed: about 2 years ago

allanecology/BetaDivMultifun

This is the functions and code collection documenting the project BetaDivMultifun. To use the package, see instructions in vignettes/how-to-use-this-package.Rmd.

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Size: 10.4 MB - Last synced: 14 days ago - Pushed: 6 months ago

SunXQlab/stMLnet

stMLnet: Dissecting spatial and multilayer cell-cell communications with stMLnet

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GabauerDavid/ConnectednessApproach

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statOmics/tradeSeq

TRAjectory-based Differential Expression analysis for SEQuencing data

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Size: 61.2 MB - Last synced: 3 days ago - Pushed: 5 months ago

steve-the-bayesian/BOOM

A C++ library for Bayesian modeling, mainly through Markov chain Monte Carlo, but with a few other methods supported. BOOM = "Bayesian Object Oriented Modeling". It is also the sound your computer makes when it crashes.

* Interfaces/R/BoomSpikeSlab/DESCRIPTION

Size: 9.9 MB - Last synced: about 5 hours ago - Pushed: about 6 hours ago

sulab-wmu/scPagwas

Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data

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Size: 992 MB - Last synced: 13 days ago - Pushed: 13 days ago

SofieVG/FlowSOM

Using self-organizing maps for visualization and interpretation of cytometry data

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Size: 22 MB - Last synced: 5 months ago - Pushed: 5 months ago

cran/bnlearn

:exclamation: This is a read-only mirror of the CRAN R package repository. bnlearn — Bayesian Network Structure Learning, Parameter Learning and Inference. Homepage: https://www.bnlearn.com/