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GitHub / Jtrachsel / pdtools
Functions for working with NCBI's Pathogen Detection data
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Jtrachsel%2Fpdtools
Stars: 2
Forks: 0
Open Issues: 0
License: gpl-3.0
Language: R
Repo Size: 6.51 MB
Dependencies:
36
Created: over 2 years ago
Updated: over 1 year ago
Last pushed: about 2 months ago
Last synced: about 2 months ago
Topics: bacterial-genomes, bioinformatics, comparative-genomics, ncbi-pathogens, pangenomics, pathogen-detection, pathogenomics, r
Files
Dependencies
- R >= 4.0.0 depends
- Biostrings * imports
- RCurl * imports
- datasets * imports
- dplyr * imports
- furrr * imports
- glue * imports
- igraph * imports
- lubridate * imports
- magrittr * imports
- parallelDist * imports
- purrr * imports
- readr * imports
- rlang * imports
- rvest * imports
- stringr * imports
- tibble * imports
- tidyr * imports
- covr * suggests
- future * suggests
- knitr * suggests
- rmarkdown * suggests
- testthat >= 3.0.0 suggests
- tidyverse * suggests
- actions/checkout v2 composite
- r-lib/actions/check-r-package v2 composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-r-dependencies v2 composite
- actions/checkout v2 composite
- r-lib/actions/setup-pandoc v1 composite
- r-lib/actions/setup-r v1 composite
- r-lib/actions/setup-r-dependencies v1 composite
- actions/checkout v2 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-r-dependencies v2 composite