IdoBar/HPC_SNP_calling_documentation

SNP calling pipeline for clonal Ascochyta rabiei

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ccdmb/catastrophy

CATAStrophy predicts filamentous plant pathogen lifestyle characteristics based on their CAZyme composition.

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tgolubch/castanet

Data processing scripts for analysis of targeted metagenomics sequencing data. Intended for use with multiplexed Illumina short-read data generated after enrichment.

Language: Python - Size: 27.3 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 2 - Forks: 1

444thLiao/pangenome_workflow

luigi based workflow for analysising WGS samples collecting from different source. It will auto clustering, annotating gene or species, and finally perform pangenome analysis(roary).

Language: Python - Size: 1.24 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 6 - Forks: 0

Jtrachsel/pdtools

Functions for working with NCBI's Pathogen Detection data

Language: R - Size: 6.51 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 2 - Forks: 0

lgi-onehealth/ref-match-db

A nextflow workflow to build referenceseeker DBs on the fly

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JRaviLab/webpage

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