algbio/ggcat

Compacted and colored de Bruijn graph construction and querying

Language: Rust - Size: 5.31 MB - Last synced at: about 5 hours ago - Pushed at: about 7 hours ago - Stars: 84 - Forks: 12

Marcos-Fernando/AnnoTEP

AnnoTEP - a platform for the annotation of transposable elements in plants

Language: Perl - Size: 204 MB - Last synced at: about 21 hours ago - Pushed at: 1 day ago - Stars: 3 - Forks: 0

dyohanne/RepAn

Analysis functions for deep sequenced immune repertoire (Repseq) datasets in R

Language: R - Size: 12.3 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 3 - Forks: 3

jeszyman/cfdna

Language: HTML - Size: 967 MB - Last synced at: 1 day ago - Pushed at: 2 days ago - Stars: 2 - Forks: 3

yodeng/runjob

runjob is a program for managing a group of related jobs running on a compute cluster

Language: Python - Size: 1.24 MB - Last synced at: 2 days ago - Pushed at: 3 days ago - Stars: 10 - Forks: 4

YichaoOU/HemTools

HemTools: a collection of NGS pipelines and bioinformatic analyses

Language: Python - Size: 895 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 72 - Forks: 21

nodrogluap/tamor

Illumina Dragen cancer genome and transcriptome analysis automation using Snakemake

Language: Python - Size: 381 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 7 - Forks: 1

barricklab/seabreeze Fork of ira-zibbu/seabreeze-ltee-analysis

seabreeze: A Pipeline for Analyzing Structural Variation Between Bacterial Genome Assemblies

Language: Python - Size: 20 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 0 - Forks: 1

mobidic/MobiDL

MobidicWDL workflows

Language: WDL - Size: 588 KB - Last synced at: about 12 hours ago - Pushed at: about 14 hours ago - Stars: 5 - Forks: 5

biopatternsg/biopatternsg

This project combines Generative AI and Logic AI to form an integrated process, a pipeline, that retrieves large volumes of scientific information and produces logical models that can be validated and leveraged by human experts. Our goals are to organize and to analyze knowledge with the assistance of AI and other bio-information retrieval tools.

Size: 46.1 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 0 - Forks: 1

ComputationalBiologyLab/AntiPan

Comprehensive in-silico subunit vaccine discovery workflow

Language: Shell - Size: 27.4 MB - Last synced at: 4 days ago - Pushed at: 5 days ago - Stars: 0 - Forks: 0

rpratam/amr

This repository will help you to perform bioinformatics analysis on sequencing data from different sequencing platform (ONT, Illumination)

Size: 526 KB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 0 - Forks: 0

gbif/hp-asean

Biodiversity Informatics and Geospatial Analysis, ASEAN Centre for Biodiversity

Language: HTML - Size: 202 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 1 - Forks: 2

chanzuckerberg/czid-web

Infectious Disease Sequencing Platform

Language: TypeScript - Size: 466 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 87 - Forks: 27

ngless-toolkit/ngless

NGLess: NGS with less work

Language: Haskell - Size: 14.1 MB - Last synced at: 1 day ago - Pushed at: 4 months ago - Stars: 150 - Forks: 25

saketkc/pysradb

Package for fetching metadata and downloading data from SRA/ENA/GEO

Language: Python - Size: 7.09 MB - Last synced at: 1 day ago - Pushed at: about 1 month ago - Stars: 335 - Forks: 65

DIncalciLab/samurai

A bioinformatics best-practice analysis pipeline for the analysis of shallow whole genome sequencing (sWGS) data for the identification of copy number alterations (CNAs).

Language: Nextflow - Size: 4.01 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 13 - Forks: 0

CogDisResLab/drugfindR

Repository holding the code for the drugfindR R package

Language: R - Size: 7.37 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 8 - Forks: 3

wanyuac/Assembly_toolkit

Scripts for de novo genome assembly

Language: Shell - Size: 111 KB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 0 - Forks: 0

cbg-ethz/V-pipe

V-pipe is a pipeline designed for analysing NGS data of short viral genomes

Language: Jupyter Notebook - Size: 17.5 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 138 - Forks: 46

asadprodhan/BioinfTutorials

Bioinf Tutorials

Size: 199 KB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 1 - Forks: 1

ilmn-mouse-cecal/ribozap

Tool for creating additional probes to deplete rRNA

Language: Python - Size: 132 KB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 0 - Forks: 0

BCCDC-PHL/basic-sequence-qc

Generate some basic quality control statistics on an arbitrary set of illumina fastq sequence files.

Language: Python - Size: 1.74 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 1 - Forks: 0

BCCDC-PHL/plasmid-screen

Screen plasmids for carbapenemase resistance genes, and classify using MOB Suite

Language: Python - Size: 104 KB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 1 - Forks: 0

whl-usc/rna2d3d

Scripts and reference files relevant to the computational analysis of data generated by crosslink-ligation based experiments.

Language: Python - Size: 52 MB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 1 - Forks: 1

milaboratory/platforma

Platforma SDK

Language: TypeScript - Size: 24.6 MB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 17 - Forks: 2

biowdl/tasks

A collection of reusable WDL tasks. Category:Other

Language: WDL - Size: 1.9 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 87 - Forks: 30

Mansur090909/Drug_Potency_PredictionML

Allows users to investigate a target protein / disease, and generate a machine learning model to predict potency in any compound (in SMILES format) against that target as represented by the pIC50 metric.

Language: Python - Size: 226 KB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 1 - Forks: 0

LDolanLDolan/rna-analyzer

A professional bioinformatics web application built with R, Bioconductor, and Plumber that provides both an interactive browser interface and RESTful API for DNA/RNA sequence pattern matching, restriction site analysis, and motif detection - deployed on Render with Docker for scalable genomic sequence analysis.

Language: HTML - Size: 27.3 KB - Last synced at: 10 days ago - Pushed at: 11 days ago - Stars: 0 - Forks: 0

stjude-rust-labs/sprocket

A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).

Language: Rust - Size: 986 KB - Last synced at: 11 days ago - Pushed at: 12 days ago - Stars: 79 - Forks: 14

LDolanLDolan/dna-str-matcher

A web-based tool that detects short tandem repeats in DNA and highlights potential gene-like structures using custom input.

Language: Python - Size: 21.5 KB - Last synced at: 12 days ago - Pushed at: 12 days ago - Stars: 0 - Forks: 0

Yasas1994/vcat

A tool for adding taxonomic annotations to virus contigs, mapping reads to virus genomes and much more.

Language: Python - Size: 2.29 MB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 4 - Forks: 0

bacalhau-project/bacalhau

Community-driven, simple, yet powerful framework for fast, cost-effective distributed Compute over Data.

Language: Go - Size: 191 MB - Last synced at: 10 days ago - Pushed at: 12 days ago - Stars: 816 - Forks: 99

xHaMMaDy/AD-scRNA2QSAR

A comprehensive computational pipeline that bridges single-cell genomics and cheminformatics to accelerate Alzheimer's Disease research. This project integrates advanced bioinformatics and machine learning to create a seamless workflow from raw single-cell RNA sequencing data to predictive drug discovery models.

Language: Jupyter Notebook - Size: 2.32 MB - Last synced at: 14 days ago - Pushed at: 14 days ago - Stars: 6 - Forks: 0

yonesora56/plant2human

Analysis workflow for novel gene search based on structural similarity search

Language: Jupyter Notebook - Size: 44.1 MB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 4 - Forks: 1

CHETHAN562/reflow

A simple CLI deployment manager for Next.js apps using Docker (Nginx, Blue-Green) on Linux VPS.

Language: Go - Size: 101 KB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 0 - Forks: 0

MDU-PHL/bohra

A pipeline for bioinformatics analysis of bacterial genomes

Language: Nextflow - Size: 358 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 30 - Forks: 5

Dazai210/AD-scRNA2QSAR

Accelerate Alzheimer's Disease research with our AD-scRNA2QSAR pipeline. Transform scRNA-seq data into QSAR models seamlessly. 🌟🛠️

Language: Jupyter Notebook - Size: 2.31 MB - Last synced at: 16 days ago - Pushed at: 16 days ago - Stars: 0 - Forks: 0

bioinfonupeb/transcriptomic_analysis_lep

Transcriptomic analysis.

Language: Shell - Size: 42 KB - Last synced at: 16 days ago - Pushed at: 16 days ago - Stars: 1 - Forks: 0

gabrielvpina/viralquest

A user-friendly pipeline for viral diversity analysis and characterization.

Language: Python - Size: 94.9 MB - Last synced at: 15 days ago - Pushed at: 15 days ago - Stars: 2 - Forks: 0

KarchinLab/open-cravat

A modular annotation tool for genomic variants

Language: JavaScript - Size: 9.28 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 125 - Forks: 34

pertzlab/CellZarr

CellZarr is a reproducible workflow for high-content analysis of live-cell timelapse imaging, processing raw ND2 files to quantitative features for scalable biological analysis.

Language: Jupyter Notebook - Size: 10.1 MB - Last synced at: 17 days ago - Pushed at: 17 days ago - Stars: 0 - Forks: 0

stjude-rust-labs/sprocket-action

Run Sprocket WDL document validation as part of a CI/CD pipeline with GitHub Actions.

Language: Shell - Size: 388 KB - Last synced at: 17 days ago - Pushed at: 17 days ago - Stars: 6 - Forks: 2

datirium/workflows

CWL based Bioinformatics Workflows

Language: Common Workflow Language - Size: 3.88 MB - Last synced at: 18 days ago - Pushed at: 18 days ago - Stars: 17 - Forks: 18

Elliot-Chan-120/NOCTURNAL

NOCTURNAL: Exploring the dark chemical space. A streamlined computational drug discovery platform from target identification to optimized drug visualization. Featuring a unique molecular optimization algorithm "MutaGen" and an interactive chemical space visualization module "ChemNet". All reinforced behind a modular, fault-tolerant architecture.

Language: Python - Size: 26.5 MB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 3 - Forks: 0

lynnlangit/gcp-for-bioinformatics

GCP for Bioinformatics Researchers

Language: Jupyter Notebook - Size: 89.9 MB - Last synced at: 8 days ago - Pushed at: about 2 months ago - Stars: 267 - Forks: 72

lettlini/cellular-dynamics-nf-modules

nextflow modules for researching cellular dynamics

Language: Python - Size: 735 KB - Last synced at: 20 days ago - Pushed at: 20 days ago - Stars: 0 - Forks: 0

dissipative/awesome-bio-go

A curated list of Bioinformatics software written in the Go language.

Language: Makefile - Size: 5.86 KB - Last synced at: 7 days ago - Pushed at: almost 2 years ago - Stars: 23 - Forks: 1

oicr-gsi/shesmu

Decision-driven action launching system

Language: Java - Size: 38.3 MB - Last synced at: 23 days ago - Pushed at: 23 days ago - Stars: 9 - Forks: 5

jasonwong-lab/smk_sv

A snakemake pipeline to call structure variants from ONT data

Language: Python - Size: 4.33 MB - Last synced at: 24 days ago - Pushed at: 24 days ago - Stars: 2 - Forks: 0

OmarOakheart/nPhase

Ploidy agnostic phasing pipeline and algorithm

Language: Python - Size: 50.5 MB - Last synced at: 13 days ago - Pushed at: over 1 year ago - Stars: 46 - Forks: 5

koszullab/hicstuff Fork of baudrly/hicstuff

Simple library/pipeline to generate and handle Hi-C data.

Language: Python - Size: 10.9 MB - Last synced at: 18 days ago - Pushed at: 8 months ago - Stars: 38 - Forks: 7

egaffo/CirComPara

:microscope: A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data

Language: R - Size: 16 MB - Last synced at: 17 days ago - Pushed at: about 5 years ago - Stars: 16 - Forks: 11

rajanbit/Archive

Archive of all the tools and pipelines

Language: Python - Size: 174 KB - Last synced at: 28 days ago - Pushed at: 28 days ago - Stars: 5 - Forks: 1

urmi-21/pyrpipe

Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.

Language: Python - Size: 204 MB - Last synced at: 14 days ago - Pushed at: about 4 years ago - Stars: 84 - Forks: 28

prairie-guy/parallel_zip

A Python wrapper for GNU parallel that naturally embeds shell code into Python scripts or Jupyter notebooks (no delimiter hell). Features parameter substitution, environment substitution, and cross-product generation to eliminate shell loops. Perfect for integrating Unix programs into Python environments for bioinformatics and data science.

Language: Python - Size: 80.1 KB - Last synced at: 30 days ago - Pushed at: 30 days ago - Stars: 0 - Forks: 0

elifmgungor/cfDNA-ResponsePrediction

Bioinformatics pipeline for predicting cancer treatment response using cfDNA nucleosome signals.

Size: 3.91 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

Novartis/pisces

PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using Salmon.

Language: Python - Size: 17.6 MB - Last synced at: 7 days ago - Pushed at: about 1 month ago - Stars: 30 - Forks: 3

elsasserlab/minute

MINUTE-ChIP data analysis workflow

Language: Python - Size: 5.19 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 3 - Forks: 0

Yuxuanliu-HZAU/HybSuite

An integrated pipeline for hybrid capture phylogenomics from reads to trees

Language: Shell - Size: 14.3 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 3 - Forks: 0

open2c/distiller-sm

a Snakemake version of distiller - the Open2C Hi-C mapping workflow

Language: Python - Size: 146 KB - Last synced at: 11 days ago - Pushed at: about 1 month ago - Stars: 5 - Forks: 3

boulardlab/3t-seq

A Snakemake workflow for single copy gene, transposable elements and tRNA expression analysis

Language: Python - Size: 28.4 MB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 8 - Forks: 1

Sydney-Informatics-Hub/Bioinformatics

A suite of bioinformatics data processing and analysis pipelines, software, and training resources for common methods.

Size: 173 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 17 - Forks: 1

montilab/nf-gwas-pipeline

A Nextflow Genome-Wide Association Study (GWAS) Pipeline

Language: R - Size: 5.25 MB - Last synced at: 5 days ago - Pushed at: about 1 month ago - Stars: 35 - Forks: 21

zjnolen/PopGLen

Bioinformatics pipeline to process whole genome resequencing data and perform genotype likelihood based population genomic analyses using ANGSD and related softwares. Flexible to datasets that combine high/low coverage and historical/fresh samples.

Language: Python - Size: 18.9 MB - Last synced at: 4 days ago - Pushed at: about 2 months ago - Stars: 14 - Forks: 1

sanger-pathogens/circlator

A tool to circularize genome assemblies

Language: Python - Size: 25.7 MB - Last synced at: 30 days ago - Pushed at: over 1 year ago - Stars: 243 - Forks: 57

PavlidisLab/rnaseq-pipeline

RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.

Language: Shell - Size: 43.6 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 24 - Forks: 5

GenomiqueENS/eoulsan

A pipeline and a framework for NGS analysis (RNA-seq and scRNA-seq)

Language: Java - Size: 305 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 52 - Forks: 11

infocusp/scaLR

Single cell analysis using Low Resource

Language: Python - Size: 166 MB - Last synced at: 17 days ago - Pushed at: 5 months ago - Stars: 17 - Forks: 0

TuBieJun/bismark-methylation-workflow

A basic simple workflow for bisulfite sequencing data methylation analysis using bismark.

Language: WDL - Size: 4.88 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 1 - Forks: 0

yupenghe/methylpy

WGBS/NOMe-seq Data Processing & Differential Methylation Analysis

Language: Python - Size: 28.5 MB - Last synced at: 29 days ago - Pushed at: about 2 years ago - Stars: 143 - Forks: 51

quadram-institute-bioscience/socru

Order and orientation of complete bacterial genomes

Language: Python - Size: 226 MB - Last synced at: 17 days ago - Pushed at: 17 days ago - Stars: 28 - Forks: 7

pritampanda15/YouTube-Tutorials

Tutorials on bioinformatics, computational biology, molecular dynamics, and other specialized scientific tools and workflows.

Size: 2.95 MB - Last synced at: 9 days ago - Pushed at: 9 months ago - Stars: 2 - Forks: 0

vihaankulkarni29/FastaAAExtractor

Language: Jupyter Notebook - Size: 1.7 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

hillerlab/TOGA

TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or lost.

Language: Python - Size: 43.4 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 182 - Forks: 25

replikation/MPOA

Mask Pathogens for Outbreak Analysis

Language: Nextflow - Size: 1.57 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 2 - Forks: 0

Daylily-Informatics/daylily

A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing FASTQ to snvVCF in <60m, for dollars a sample and achieving Fscores of 0.998.

Language: Python - Size: 350 MB - Last synced at: about 1 month ago - Pushed at: 2 months ago - Stars: 23 - Forks: 2

andrewjpage/tiptoft

Predict plasmids from uncorrected long read data

Language: Python - Size: 37.8 MB - Last synced at: 6 days ago - Pushed at: over 5 years ago - Stars: 40 - Forks: 10

Snakemake-Profiles/lsf

Snakemake profile for running jobs on an LSF cluster

Language: Python - Size: 166 KB - Last synced at: 8 days ago - Pushed at: 12 months ago - Stars: 38 - Forks: 22

RenscoHogers/Bovine-Assembly-Pipeline

Snakemake workflow for the assembly and evaluation of bovine genomes.

Language: Python - Size: 182 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0

jeszyman/cfdna-cna

Language: R - Size: 273 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0

AuReMe/metage2metabo

From annotated genomes to metabolic screening in large scale microbiotas

Language: Jupyter Notebook - Size: 36.2 MB - Last synced at: about 1 month ago - Pushed at: 2 months ago - Stars: 60 - Forks: 7

sanger-pathogens/iva

de novo virus assembler of Illumina paired reads

Language: Python - Size: 8.46 MB - Last synced at: about 1 month ago - Pushed at: about 4 years ago - Stars: 56 - Forks: 19

sanger-pathogens/ariba

Antimicrobial Resistance Identification By Assembly

Language: Python - Size: 12 MB - Last synced at: about 1 month ago - Pushed at: almost 2 years ago - Stars: 177 - Forks: 56

hms-immunology/RNA_QC_APP

RNA-seq Quality Control and Preprocessing Tool - Interactive Shiny application for comprehensive RNA sequencing data validation, quality assessment, filtering, and normalization. Developed at Harvard Medical School Department of Immunology for global research use. Topics

Language: R - Size: 11 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0

medvir/VirMet

Set of tools for viral metagenomics.

Language: Python - Size: 1.2 MB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 14 - Forks: 5

ImagoXV/NanoASV

NanoASV official repo

Language: Shell - Size: 86.4 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 9 - Forks: 3

weygoldt/wavetracker Fork of tillraab/wavetracker

Track fundamental frequencies of multiple wave-type electric fish on electrode grid recordings

Language: Python - Size: 1.13 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 2

GuyTeichman/RNAlysis

Analyze your RNA sequencing data without writing a single line of code

Language: Python - Size: 797 MB - Last synced at: 9 days ago - Pushed at: about 2 months ago - Stars: 135 - Forks: 13

niekwit/damid-seq

DamMapper: Snakemake workflow for DamID-Seq analysis

Language: Python - Size: 83.2 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 4 - Forks: 0

V-Z/hybseq-scripts

Set of scripts to process HybSeq target enrichment HTS data (on computing grids).

Language: Shell - Size: 2.35 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 4 - Forks: 2

mansikath/Variant-calling

Repository for variant calling utilizing bioinformatics tools and databases

Size: 10.7 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0

RoySoumik23/AutoMutSig_Pipeline

The automation pipeline processes mutation and clinical data, aligning and cleaning the inputs before performing a detailed analysis. It enables visualization and interpretation of mutation signatures with a focus on specific genes and cancer subtypes.

Language: R - Size: 106 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 1

JoshuaIszatt/phunky

Nanopore long read assembly data pipeline for phage genomes

Language: Python - Size: 151 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0

MaayanLab/Zika-RNAseq-Pipeline

An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study

Language: Jupyter Notebook - Size: 4.91 MB - Last synced at: 17 days ago - Pushed at: about 3 years ago - Stars: 103 - Forks: 60

SPerekrestova/pill_checker

Provides a powerful medicine pack analysis using ML and NLP to achieve accurate recognition of active ingredients

Language: Python - Size: 1.15 MB - Last synced at: about 1 month ago - Pushed at: about 2 months ago - Stars: 3 - Forks: 1

tjpel/ProteomicsAnalysisPipeline

A highly customizable proteomics analysis pipeline for TMT and Olink data.

Language: Python - Size: 69.1 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 3 - Forks: 0

incsteps/nf-cachebrowser

A Nextflow plugin that provides a web-based interface for visualizing and exploring Nextflow pipeline executions directly in your browser.

Language: Groovy - Size: 337 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 1 - Forks: 2

DelusionalSimon/Barrel-aged_GNN

Reproducible glycoinformatics pipeline for automated machine learning experiments

Language: Jupyter Notebook - Size: 13.8 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0

GregorySchwartz/too-many-cells

Cluster single cells and analyze cell clade relationships with colorful visualizations.

Language: Haskell - Size: 22.3 MB - Last synced at: 28 days ago - Pushed at: 9 months ago - Stars: 112 - Forks: 18