CHETHAN562/reflow

A simple CLI deployment manager for Next.js apps using Docker (Nginx, Blue-Green) on Linux VPS.

Language: Go - Size: 101 KB - Last synced at: about 13 hours ago - Pushed at: about 14 hours ago - Stars: 0 - Forks: 0

Marcos-Fernando/AnnoTEP

AnnoTEP - a platform for the annotation of transposable elements in plants

Language: Perl - Size: 204 MB - Last synced at: about 17 hours ago - Pushed at: about 18 hours ago - Stars: 3 - Forks: 0

prairie-guy/parallel_zip

A Python wrapper for GNU parallel that naturally embeds shell code into Python scripts or Jupyter notebooks (no delimiter hell). Features parameter substitution, environment substitution, and cross-product generation to eliminate shell loops. Perfect for integrating Unix programs into Python environments for bioinformatics and data science.

Language: Python - Size: 80.1 KB - Last synced at: about 21 hours ago - Pushed at: about 22 hours ago - Stars: 0 - Forks: 0

nodrogluap/tamor

Illumina Dragen cancer genome and transcriptome analysis automation using Snakemake

Language: Python - Size: 381 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 7 - Forks: 1

elifmgungor/cfDNA-ResponsePrediction

Bioinformatics pipeline for predicting cancer treatment response using cfDNA nucleosome signals.

Size: 3.91 KB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 0 - Forks: 0

elsasserlab/minute

MINUTE-ChIP data analysis workflow

Language: Python - Size: 5.19 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 3 - Forks: 0

Yuxuanliu-HZAU/HybSuite

An integrated pipeline for hybrid capture phylogenomics from reads to trees

Language: Shell - Size: 14.3 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 3 - Forks: 0

stjude-rust-labs/sprocket

A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).

Language: Rust - Size: 983 KB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 75 - Forks: 14

milaboratory/platforma

Platforma SDK

Language: TypeScript - Size: 23.5 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 17 - Forks: 2

Sydney-Informatics-Hub/Bioinformatics

A suite of bioinformatics data processing and analysis pipelines, software, and training resources for common methods.

Size: 173 KB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 17 - Forks: 1

montilab/nf-gwas-pipeline

A Nextflow Genome-Wide Association Study (GWAS) Pipeline

Language: R - Size: 5.25 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 35 - Forks: 21

Elliot-Chan-120/NOCTURNAL-v2.4.0

NOCTURNAL: Exploring the dark chemical space. A streamlined computational drug discovery platform from target identification to candidate optimization. Featuring a unique molecular optimization algorithm "MutaGen" and an interactive chemical space visualization module "ChemNet". All reinforced behind a modular, fault-tolerant architecture.

Language: Python - Size: 15.3 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 3 - Forks: 0

lettlini/cellular-dynamics-nf-modules

nextflow modules for researching cellular dynamics

Language: Python - Size: 729 KB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 0 - Forks: 0

DIncalciLab/samurai

A bioinformatics best-practice analysis pipeline for the analysis of shallow whole genome sequencing (sWGS) data for the identification of copy number alterations (CNAs).

Language: Nextflow - Size: 3.94 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 13 - Forks: 0

zjnolen/PopGLen

Bioinformatics pipeline to process whole genome resequencing data and perform genotype likelihood based population genomic analyses using ANGSD and related softwares. Flexible to datasets that combine high/low coverage and historical/fresh samples.

Language: Python - Size: 18.9 MB - Last synced at: 1 day ago - Pushed at: 26 days ago - Stars: 14 - Forks: 1

bacalhau-project/bacalhau

Community-driven, simple, yet powerful framework for fast, cost-effective distributed Compute over Data.

Language: Go - Size: 191 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 811 - Forks: 97

sanger-pathogens/circlator

A tool to circularize genome assemblies

Language: Python - Size: 25.7 MB - Last synced at: 1 day ago - Pushed at: about 1 year ago - Stars: 243 - Forks: 57

PavlidisLab/rnaseq-pipeline

RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.

Language: Shell - Size: 43.6 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 24 - Forks: 5

Mansur090909/Drug_Potency_PredictionML

Allows users to investigate a target protein / disease, and generate a machine learning model to predict potency in any compound (in SMILES format) against that target as represented by the pIC50 metric.

Language: Python - Size: 226 KB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 1 - Forks: 0

GenomiqueENS/eoulsan

A pipeline and a framework for NGS analysis (RNA-seq and scRNA-seq)

Language: Java - Size: 305 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 52 - Forks: 11

gabrielvpina/viralquest

A user-friendly pipeline for viral diversity analysis and characterization.

Language: HTML - Size: 42.8 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 1 - Forks: 0

saketkc/pysradb

Package for fetching metadata and downloading data from SRA/ENA/GEO

Language: Python - Size: 7.09 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 332 - Forks: 65

open2c/distiller-sm

a Snakemake version of distiller - the Open2C Hi-C mapping workflow

Language: Python - Size: 134 KB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 4 - Forks: 3

gbif/hp-asean

Biodiversity Informatics and Geospatial Analysis, ASEAN Centre for Biodiversity

Language: SCSS - Size: 58.2 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 0 - Forks: 1

cbg-ethz/V-pipe

V-pipe is a pipeline designed for analysing NGS data of short viral genomes

Language: Jupyter Notebook - Size: 17.5 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 138 - Forks: 46

yodeng/runjob

runjob is a program for managing a group of related jobs running on a compute cluster

Language: Python - Size: 1.2 MB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 10 - Forks: 4

chanzuckerberg/czid-web

Infectious Disease Sequencing Platform

Language: TypeScript - Size: 466 MB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 86 - Forks: 26

barricklab/seabreeze Fork of ira-zibbu/seabreeze-ltee-analysis

seabreeze: A Pipeline for Analyzing Structural Variation Between Bacterial Genome Assemblies

Language: Python - Size: 20 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 0 - Forks: 1

TuBieJun/bismark-methylation-workflow

A basic simple workflow for bisulfite sequencing data methylation analysis using bismark.

Language: WDL - Size: 4.88 KB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 1 - Forks: 0

yupenghe/methylpy

WGBS/NOMe-seq Data Processing & Differential Methylation Analysis

Language: Python - Size: 28.5 MB - Last synced at: about 4 hours ago - Pushed at: about 2 years ago - Stars: 143 - Forks: 51

lynnlangit/gcp-for-bioinformatics

GCP for Bioinformatics Researchers

Language: Jupyter Notebook - Size: 89.9 MB - Last synced at: 2 days ago - Pushed at: about 1 month ago - Stars: 265 - Forks: 71

ngless-toolkit/ngless

NGLess: NGS with less work

Language: Haskell - Size: 14.1 MB - Last synced at: 3 days ago - Pushed at: 3 months ago - Stars: 148 - Forks: 25

oicr-gsi/shesmu

Decision-driven action launching system

Language: Java - Size: 38.2 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 9 - Forks: 5

quadram-institute-bioscience/socru

Order and orientation of complete bacterial genomes

Language: Python - Size: 226 MB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 28 - Forks: 7

Novartis/pisces

PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using Salmon.

Language: Python - Size: 17.6 MB - Last synced at: 12 days ago - Pushed at: 12 days ago - Stars: 29 - Forks: 3

datirium/workflows

CWL based Bioinformatics Workflows

Language: Common Workflow Language - Size: 3.88 MB - Last synced at: 12 days ago - Pushed at: 12 days ago - Stars: 16 - Forks: 18

pritampanda15/YouTube-Tutorials

Tutorials on bioinformatics, computational biology, molecular dynamics, and other specialized scientific tools and workflows.

Size: 2.95 MB - Last synced at: 3 days ago - Pushed at: 8 months ago - Stars: 2 - Forks: 0

vihaankulkarni29/FastaAAExtractor

Language: Jupyter Notebook - Size: 1.7 MB - Last synced at: 12 days ago - Pushed at: 12 days ago - Stars: 0 - Forks: 0

hillerlab/TOGA

TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or lost.

Language: Python - Size: 43.4 MB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 182 - Forks: 25

replikation/MPOA

Mask Pathogens for Outbreak Analysis

Language: Nextflow - Size: 1.57 MB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 2 - Forks: 0

Daylily-Informatics/daylily

A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing FASTQ to snvVCF in <60m, for dollars a sample and achieving Fscores of 0.998.

Language: Python - Size: 350 MB - Last synced at: 9 days ago - Pushed at: about 1 month ago - Stars: 23 - Forks: 2

andrewjpage/tiptoft

Predict plasmids from uncorrected long read data

Language: Python - Size: 37.8 MB - Last synced at: 2 days ago - Pushed at: over 5 years ago - Stars: 40 - Forks: 10

biowdl/tasks

A collection of reusable WDL tasks. Category:Other

Language: WDL - Size: 1.82 MB - Last synced at: 18 days ago - Pushed at: 18 days ago - Stars: 87 - Forks: 30

Snakemake-Profiles/lsf

Snakemake profile for running jobs on an LSF cluster

Language: Python - Size: 166 KB - Last synced at: 1 day ago - Pushed at: 11 months ago - Stars: 38 - Forks: 22

RenscoHogers/Bovine-Assembly-Pipeline

Snakemake workflow for the assembly and evaluation of bovine genomes.

Language: Python - Size: 182 KB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 0 - Forks: 0

algbio/ggcat

Compacted and colored de Bruijn graph construction and querying

Language: Rust - Size: 5.07 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 83 - Forks: 12

jeszyman/cfdna-cna

Language: R - Size: 273 MB - Last synced at: 20 days ago - Pushed at: 20 days ago - Stars: 0 - Forks: 0

AuReMe/metage2metabo

From annotated genomes to metabolic screening in large scale microbiotas

Language: Jupyter Notebook - Size: 36.2 MB - Last synced at: 14 days ago - Pushed at: about 1 month ago - Stars: 60 - Forks: 7

sanger-pathogens/iva

de novo virus assembler of Illumina paired reads

Language: Python - Size: 8.46 MB - Last synced at: 5 days ago - Pushed at: about 4 years ago - Stars: 56 - Forks: 19

sanger-pathogens/ariba

Antimicrobial Resistance Identification By Assembly

Language: Python - Size: 12 MB - Last synced at: 11 days ago - Pushed at: over 1 year ago - Stars: 177 - Forks: 56

KarchinLab/open-cravat

A modular annotation tool for genomic variants

Language: JavaScript - Size: 9.27 MB - Last synced at: 16 days ago - Pushed at: 16 days ago - Stars: 123 - Forks: 33

hms-immunology/RNA_QC_APP

RNA-seq Quality Control and Preprocessing Tool - Interactive Shiny application for comprehensive RNA sequencing data validation, quality assessment, filtering, and normalization. Developed at Harvard Medical School Department of Immunology for global research use. Topics

Language: R - Size: 11 MB - Last synced at: 23 days ago - Pushed at: 24 days ago - Stars: 0 - Forks: 0

medvir/VirMet

Set of tools for viral metagenomics.

Language: Python - Size: 1.19 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 14 - Forks: 5

ImagoXV/NanoASV

NanoASV official repo

Language: Shell - Size: 86.4 MB - Last synced at: 24 days ago - Pushed at: 24 days ago - Stars: 9 - Forks: 3

weygoldt/wavetracker Fork of tillraab/wavetracker

Track fundamental frequencies of multiple wave-type electric fish on electrode grid recordings

Language: Python - Size: 1.13 MB - Last synced at: 24 days ago - Pushed at: 24 days ago - Stars: 0 - Forks: 2

GuyTeichman/RNAlysis

Analyze your RNA sequencing data without writing a single line of code

Language: Python - Size: 797 MB - Last synced at: 6 days ago - Pushed at: 24 days ago - Stars: 135 - Forks: 13

niekwit/damid-seq

DamMapper: Snakemake workflow for DamID-Seq analysis

Language: Python - Size: 83.2 MB - Last synced at: 25 days ago - Pushed at: 25 days ago - Stars: 4 - Forks: 0

V-Z/hybseq-scripts

Set of scripts to process HybSeq target enrichment HTS data (on computing grids).

Language: Shell - Size: 2.35 MB - Last synced at: 25 days ago - Pushed at: 26 days ago - Stars: 4 - Forks: 2

mansikath/Variant-calling

Repository for variant calling utilizing bioinformatics tools and databases

Size: 10.7 KB - Last synced at: 25 days ago - Pushed at: 26 days ago - Stars: 0 - Forks: 0

RoySoumik23/AutoMutSig_Pipeline

The automation pipeline processes mutation and clinical data, aligning and cleaning the inputs before performing a detailed analysis. It enables visualization and interpretation of mutation signatures with a focus on specific genes and cancer subtypes.

Language: R - Size: 106 KB - Last synced at: 26 days ago - Pushed at: 26 days ago - Stars: 0 - Forks: 1

urmi-21/pyrpipe

Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.

Language: Python - Size: 204 MB - Last synced at: 19 days ago - Pushed at: about 4 years ago - Stars: 84 - Forks: 28

JoshuaIszatt/phunky

Nanopore long read assembly data pipeline for phage genomes

Language: Python - Size: 151 KB - Last synced at: 26 days ago - Pushed at: 26 days ago - Stars: 0 - Forks: 0

SPerekrestova/pill_checker

Provides a powerful medicine pack analysis using ML and NLP to achieve accurate recognition of active ingredients

Language: Python - Size: 1.15 MB - Last synced at: 14 days ago - Pushed at: 27 days ago - Stars: 3 - Forks: 1

tjpel/ProteomicsAnalysisPipeline

A highly customizable proteomics analysis pipeline for TMT and Olink data.

Language: Python - Size: 69.1 MB - Last synced at: 26 days ago - Pushed at: 27 days ago - Stars: 3 - Forks: 0

incsteps/nf-cachebrowser

A Nextflow plugin that provides a web-based interface for visualizing and exploring Nextflow pipeline executions directly in your browser.

Language: Groovy - Size: 337 KB - Last synced at: 26 days ago - Pushed at: 27 days ago - Stars: 1 - Forks: 2

infocusp/scaLR

Single cell analysis using Low Resource

Language: Python - Size: 166 MB - Last synced at: 20 days ago - Pushed at: 4 months ago - Stars: 17 - Forks: 0

rpratam/amr

This repository will help you to perform bioinformatics analysis on sequencing data from different sequencing platform (ONT, Illumination)

Size: 526 KB - Last synced at: 27 days ago - Pushed at: 28 days ago - Stars: 0 - Forks: 0

DelusionalSimon/Barrel-aged_GNN

Reproducible glycoinformatics pipeline for automated machine learning experiments

Language: Jupyter Notebook - Size: 13.8 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

ShujiaHuang/ilus

A lightweight and handy variant calling pipeline generator for whole-genome sequencing (WGS) and whole exom sequencing data (WES) analysis by using GATK and Sentieon. 一个基于 GATK 和 Sentieon 的简易且全面的 WGS/WES 分析流程生成器.

Language: Python - Size: 855 KB - Last synced at: 3 days ago - Pushed at: about 1 month ago - Stars: 134 - Forks: 35

ilmn-mouse-cecal/ribozap

Tool for creating additional probes

Language: Python - Size: 110 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

andrewgull/MGERT

Mobile Genetic Elements Retrieving Tool

Language: Python - Size: 1.99 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 15 - Forks: 5

Preetam2303/tcga-biomarker-pipeline

R pipeline for TCGA transcriptomics biomarker discovery with ML & SHAP

Language: R - Size: 41 KB - Last synced at: 24 days ago - Pushed at: 2 months ago - Stars: 0 - Forks: 0

ronaldsoft/MARIA

A novel ultrafast and multithreaded bioinformatics toolkit built in Golang for cleaning raw sequencing data from Illumina, Oxford Nanopore, PacBio, and Ion Torrent platforms.

Language: Go - Size: 2.42 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

IdoBar/HPC_SNP_calling_documentation

SNP calling pipeline for clonal Ascochyta rabiei

Language: HTML - Size: 7.06 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

BCCDC-PHL/plasmid-screen

Screen plasmids for carbapenemase resistance genes, and classify using MOB Suite

Language: Python - Size: 93.8 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 1 - Forks: 0

TurakhiaLab/ROADIES

Tool for fully-automated inference of species trees from raw genome assemblies

Language: Python - Size: 279 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 33 - Forks: 3

r3fang/SnapATAC

Analysis Pipeline for Single Cell ATAC-seq

Language: R - Size: 170 MB - Last synced at: 4 days ago - Pushed at: about 2 years ago - Stars: 318 - Forks: 132

gloknar/scRNA-Seq_Protocol_Updated_Xiao_et_al

Optimization of Xiao et al.'s protocol for scRNA-seq analysis in R 4.X

Language: HTML - Size: 682 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

mobidic/MobiDL

MobidicWDL workflows

Language: WDL - Size: 559 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 5 - Forks: 5

sanger-pathogens/snp-sites

Finds SNP sites from a multi-FASTA alignment file

Language: C - Size: 14.7 MB - Last synced at: about 1 month ago - Pushed at: over 4 years ago - Stars: 259 - Forks: 49

DeplanckeLab/ASAP

ASAP : Automated Single-cell Analysis Pipeline

Size: 170 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 26 - Forks: 10

Yasas1994/vcat

A tool for adding taxonomic annotations to virus contigs, mapping reads to virus genomes and much more.

Language: Python - Size: 2.26 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 4 - Forks: 0

scipipe/scipipe

Robust, flexible and resource-efficient pipelines using Go and the commandline

Language: Go - Size: 1.06 MB - Last synced at: about 1 month ago - Pushed at: 11 months ago - Stars: 1,096 - Forks: 72

sabifo4/fasta-phylip-partitions

Convert from fasta to phylip format and generate partitioned data if needed

Language: Perl - Size: 48.8 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 3 - Forks: 0

SWAROOP006/NGS-Variant-Calling

This project focuses on identifying somatic variants in whole-genome sequencing (WGS) data from tongue cancer samples and cell lines. The workflow leverages industry-standard tools for alignment, quality control, and variant calling, specifically targeting chromosomes 6 and 7 of the human genome.

Language: HTML - Size: 1.94 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

SWAROOP006/Machine-Learning-in-Bioinformatics-using-WEKA

Used WEKA machine learning tool to analyze the Breast cancer data and also study Protein characteristics using SMO, naïve byes and IBk models also, data bias was removed using bagging and stacking. R program was used to extract the character-specific protein sequences using the R package PROTr and peptide.

Language: R - Size: 129 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 1 - Forks: 0

hammerlab/biokepi

Bioinformatics Ketrew Pipelines

Language: OCaml - Size: 1.87 MB - Last synced at: 24 days ago - Pushed at: over 3 years ago - Stars: 28 - Forks: 4

sirine-b/VariantAInalyser

VariantAInalyser is a comprehensive platform that combines traditional bioinformatics with generative AI to streamline genomic variant analysis from VCF files. It eliminates the need to juggle multiple specialised tools by providing an all-in-one solution for variant analysis, interpretation, and reporting.

Language: Jupyter Notebook - Size: 7.43 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

GregorySchwartz/too-many-cells

Cluster single cells and analyze cell clade relationships with colorful visualizations.

Language: Haskell - Size: 22.3 MB - Last synced at: about 1 month ago - Pushed at: 8 months ago - Stars: 111 - Forks: 18

iPsychonaut/EGAP

Entheome Genome Assembly Pipeline (EGAP)

Language: Python - Size: 22.8 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 1 - Forks: 0

bioinfonupeb/transcriptomic_analysis_lep

Transcriptomic analysis.

Size: 2.93 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

CompOmics/meta-proteome-analyzer

MetaProteomeAnalyzer (MPA) software for analyzing and visualizing MS-based metaproteomics data.

Language: TSQL - Size: 607 MB - Last synced at: about 1 month ago - Pushed at: almost 5 years ago - Stars: 30 - Forks: 10

whl-usc/rna2d3d

Scripts and reference files relevant to the computational analysis of data generated by crosslink-ligation based experiments.

Language: Python - Size: 52 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 1 - Forks: 0

databio/pypiper

Python toolkit for building restartable pipelines

Language: Python - Size: 1.63 MB - Last synced at: 2 minutes ago - Pushed at: 4 months ago - Stars: 45 - Forks: 9

grailbio/reflow

A language and runtime for distributed, incremental data processing in the cloud

Language: Go - Size: 6.96 MB - Last synced at: 27 days ago - Pushed at: over 1 year ago - Stars: 967 - Forks: 52

marco315176/Analisis-de-Genomas-Virales

Análisis de genomas virales obtenidos por secuenciación de genoma completo con illumina

Language: Shell - Size: 85.9 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0

m-jahn/TnSeq-pipe

TnSeq data processing workflow

Language: Perl - Size: 265 MB - Last synced at: about 1 month ago - Pushed at: about 2 years ago - Stars: 7 - Forks: 2

dissipative/awesome-bio-go

A curated list of Bioinformatics software written in the Go language.

Language: Makefile - Size: 5.86 KB - Last synced at: 4 days ago - Pushed at: almost 2 years ago - Stars: 22 - Forks: 1

biopatternsg/biopatternsg

biopatternsg is a system that builds gene regulatory networks from a basic collection of biological objects, gathering and processing PubMed abstracts, using Internet available informational resources like Mesh, GeneOntology, UniProt, PDB and others, and that uses java and logical engines like prolog to integrate and analyse them.

Size: 230 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 1

vanheeringen-lab/seq2science

Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.

Language: Python - Size: 1.39 GB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 156 - Forks: 28