gabrielvpina/viralquest

A pipeline for viral diversity analysis

Language: Python - Size: 89.3 MB - Last synced at: about 5 hours ago - Pushed at: about 5 hours ago - Stars: 0 - Forks: 0

TurakhiaLab/ROADIES

Tool for fully-automated inference of species trees from raw genome assemblies

Language: Python - Size: 279 MB - Last synced at: about 18 hours ago - Pushed at: about 19 hours ago - Stars: 30 - Forks: 3

CHETHAN562/reflow

A simple CLI deployment manager for Next.js apps using Docker (Nginx, Blue-Green) on Linux VPS.

Language: Go - Size: 101 KB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 0 - Forks: 0

biopatternsg/biopatternsg

biopatternsg is a system that builds gene regulatory networks from a basic collection of biological objects, gathering and processing PubMed abstracts, using Internet available informational resources like Mesh, GeneOntology, UniProt, PDB and others, and that uses java and logical engines like prolog to integrate and analyse them.

Size: 223 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 0 - Forks: 1

vanheeringen-lab/seq2science

Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.

Language: Python - Size: 1.39 GB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 156 - Forks: 28

IdoBar/HPC_SNP_calling_documentation

SNP calling pipeline for clonal Ascochyta rabiei

Language: HTML - Size: 7.04 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 0 - Forks: 0

gbif/hp-asean

Biodiversity Informatics and Geospatial Analysis, ASEAN Centre for Biodiversity

Language: Ruby - Size: 37.1 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 0 - Forks: 1

oicr-gsi/shesmu

Decision-driven action launching system

Language: Java - Size: 38.2 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 8 - Forks: 4

whl-usc/rna2d3d

Scripts and reference files relevant to the computational analysis of data generated by crosslink-ligation based experiments.

Language: Python - Size: 52 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 1 - Forks: 0

jeszyman/cfdna-cna

Language: R - Size: 272 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 0 - Forks: 0

renatosantos98/ont-benchmark

Supporting data for the publication "Investigating the performance of Oxford Nanopore long-read sequencing with respect to Illumina microarrays and short-read sequencing"

Language: Jupyter Notebook - Size: 199 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 5 - Forks: 1

stjude-rust-labs/sprocket-action

Run Sprocket WDL document validation as part of a CI/CD pipeline with GitHub Actions.

Language: Shell - Size: 387 KB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 6 - Forks: 1

GuyTeichman/RNAlysis

Analyze your RNA sequencing data without writing a single line of code

Language: Python - Size: 795 MB - Last synced at: 2 days ago - Pushed at: 3 months ago - Stars: 133 - Forks: 13

miano-fc/MaxQuant-Tools

Tools for preprocessing and normalizing results of MaxQuant experiments and their respective controls from a run by normalizing data from the output peptides.txt file.

Language: Python - Size: 51.8 KB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 1 - Forks: 0

mobidic/MobiDL

MobidicWDL workflows

Language: WDL - Size: 546 KB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 5 - Forks: 5

Elliot-Chan-120/NOCTURNAL-v2.1.0

NOCTURNAL: Exploring the dark chemical space. A ChEMBL navigation-aided interface aiming to accelerate early drug discovery by scouting biological targets, building ML models on potency vs. molecular fingerprints, predicting compound pIC50, and generating optimized drug analogs using MutaGen, an original stochastic-heuristic algorithm system.

Language: Python - Size: 5.58 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 3 - Forks: 0

bacalhau-project/bacalhau

Community-driven, simple, yet powerful framework for fast, cost-effective distributed Compute over Data.

Language: Go - Size: 191 MB - Last synced at: 5 days ago - Pushed at: 6 days ago - Stars: 796 - Forks: 96

Mansur090909/Drug_Potency_PredictionML

Allows users to investigate a target protein / disease, and generate a machine learning model to predict potency in any compound (in SMILES format) against that target as represented by the pIC50 metric.

Language: Python - Size: 226 KB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 0 - Forks: 0

stjude-rust-labs/sprocket

A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).

Language: Rust - Size: 753 KB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 68 - Forks: 11

milaboratory/platforma

Platforma SDK

Language: TypeScript - Size: 20.9 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 15 - Forks: 2

ricardo-romero-ochoa/kinasepred

Kinase Inhibitor Bioactivity & Toxicity Prediction Platform

Language: Python - Size: 18.8 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 1 - Forks: 0

datirium/workflows

CWL based Bioinformatics Workflows

Language: Common Workflow Language - Size: 3.32 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 16 - Forks: 16

mansikath/Variant-calling

Repository for variant calling utilizing bioinformatics tools and databases

Size: 3.91 KB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 0 - Forks: 0

Daylily-Informatics/daylily

A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing FASTQ to snvVCF in <60m, for dollars a sample and achieving Fscores of 0.998.

Language: Python - Size: 339 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 23 - Forks: 2

niekwit/crispr-screens

Snakemake workflow for CRISPR-Cas9 screen analysis

Language: Python - Size: 35.3 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 6 - Forks: 1

Yasas1994/vcat

A tool for adding taxonomic annotations to virus contigs, mapping reads to virus genomes and much more.

Language: Python - Size: 2.24 MB - Last synced at: 9 days ago - Pushed at: 10 days ago - Stars: 3 - Forks: 0

open2c/distiller-sm

a Snakemake version of distiller - the Open2C Hi-C mapping workflow

Language: Python - Size: 131 KB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 4 - Forks: 3

lynnlangit/gcp-for-bioinformatics

GCP for Bioinformatics Researchers

Language: Jupyter Notebook - Size: 89.9 MB - Last synced at: 6 days ago - Pushed at: 6 months ago - Stars: 262 - Forks: 70

MDU-PHL/bohra

A pipeline for bioinformatics analysis of bacterial genomes

Language: Nextflow - Size: 356 MB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 28 - Forks: 4

CogDisResLab/drugfindR

Repository holding the code for the drugfindR R package

Language: R - Size: 7.13 MB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 8 - Forks: 3

nodrogluap/tamor

Illumina Dragen cancer genome and transcriptome analysis automation using Snakemake

Language: Python - Size: 380 MB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 6 - Forks: 1

Umeshkumarku1/Zoonoticus

Zoonoticus is a comprehensive tool for predicting zoonotic potential, antimicrobial resistance risk, and virulence profiles of bacterial genomes. Powered by Zento, it helps researchers rapidly identify bacteria capable of crossing species barriers and posing public health threats.

Language: Python - Size: 2.68 MB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 0 - Forks: 0

hillerlab/make_lastz_chains

Portable solution to generate genome alignment chains using lastz

Language: Python - Size: 3.46 MB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 55 - Forks: 9

hillerlab/TOGA

TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or lost.

Language: Python - Size: 43.7 MB - Last synced at: 14 days ago - Pushed at: 14 days ago - Stars: 179 - Forks: 24

cbg-ethz/V-pipe

V-pipe is a pipeline designed for analysing NGS data of short viral genomes

Language: Jupyter Notebook - Size: 17.4 MB - Last synced at: 16 days ago - Pushed at: 16 days ago - Stars: 136 - Forks: 46

Yuxuanliu-HZAU/HybSuite

HybSuite is an Integrated pipeline for Next-Generation Sequences from raw Reads to Phylogenetic Trees by only single run.

Language: Shell - Size: 11.7 MB - Last synced at: 16 days ago - Pushed at: 16 days ago - Stars: 2 - Forks: 0

gabbyz297/GWAS-Analysis

A Genome-Wide Association Study (GWAS) is an analysis used to identify associations between a genotype and an observed phenotype. This pipeline will show how to run a GWAS from raw sequence data.

Size: 92.8 KB - Last synced at: 16 days ago - Pushed at: 16 days ago - Stars: 1 - Forks: 0

barricklab/seabreeze Fork of ira-zibbu/seabreeze-ltee-analysis

seabreeze: A Pipeline for Analyzing Structural Variation Between Bacterial Genome Assemblies

Language: Python - Size: 19.9 MB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 0 - Forks: 1

faryabiLab/dockerize-workflows

Genomic data processing pipelines written in WDL making use of Docker containers to ensure stability.

Language: WDL - Size: 259 KB - Last synced at: 16 days ago - Pushed at: 16 days ago - Stars: 2 - Forks: 0

montilab/nf-gwas-pipeline

A Nextflow Genome-Wide Association Study (GWAS) Pipeline

Language: R - Size: 5.25 MB - Last synced at: 8 days ago - Pushed at: 3 months ago - Stars: 34 - Forks: 20

broadinstitute/fungal-wdl

Broad fungal method repository

Language: WDL - Size: 95.7 KB - Last synced at: 17 days ago - Pushed at: 17 days ago - Stars: 7 - Forks: 4

simonguld/CellSegmentationTracker

A Python module intended to make cell segmentation, tracking and subsequent (mostly biophysical) statisticial analysis easy

Language: Jupyter Notebook - Size: 1.8 GB - Last synced at: 17 days ago - Pushed at: 17 days ago - Stars: 13 - Forks: 2

HCL-HUBL/SAMI

Splicing Analysis with Molecular Indexes

Language: R - Size: 71.9 MB - Last synced at: 17 days ago - Pushed at: 17 days ago - Stars: 0 - Forks: 1

KarchinLab/open-cravat

A modular annotation tool for genomic variants

Language: JavaScript - Size: 9.24 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 120 - Forks: 33

cohenoa/An-Open-Source-Computational-Tool-for-Measuring-Bacterial-Biofilm-Morphology-and-Growth-Kinetics

Code to accompany the paper: ”An Open-Source Computational Tool for Measuring Bacterial Biofilm Morphology and Growth Kinetics upon One-Sided Exposure to an Anti-Microbial Source”

Language: Python - Size: 160 MB - Last synced at: 21 days ago - Pushed at: 21 days ago - Stars: 1 - Forks: 0

zjnolen/PopGLen

Bioinformatics pipeline to process whole genome resequencing data and perform genotype likelihood based population genomic analyses using ANGSD and related softwares. Flexible to datasets that combine high/low coverage and historical/fresh samples.

Language: Python - Size: 18.6 MB - Last synced at: 5 days ago - Pushed at: about 1 month ago - Stars: 11 - Forks: 1

Replicon-genetics/rg_exploder_shared

Python code for generating synthetic sequence data: DNASEQ and RNASEQ reads for use as standards in genomics data analysis pipelines

Language: Python - Size: 209 MB - Last synced at: 22 days ago - Pushed at: 22 days ago - Stars: 0 - Forks: 0

GregorySchwartz/too-many-cells

Cluster single cells and analyze cell clade relationships with colorful visualizations.

Language: Haskell - Size: 22.3 MB - Last synced at: 16 days ago - Pushed at: 6 months ago - Stars: 110 - Forks: 18

JetBrains-Research/snakecharm

Plugin for PyCharm / IntelliJ IDEA Platform IDEs which adds support for Snakemake language.

Language: Python - Size: 3.91 MB - Last synced at: 23 days ago - Pushed at: 23 days ago - Stars: 62 - Forks: 7

AndreaMariani-AM/ChIPseq_snakemake

ChIPseq pipeline for Pasini's lab written in snakemake

Language: Python - Size: 117 KB - Last synced at: 23 days ago - Pushed at: 24 days ago - Stars: 0 - Forks: 0

SPerekrestova/pill_checker

Provides a powerful medicine pack analysis using ML and NLP to achieve accurate recognition of active ingredients

Language: Python - Size: 1.09 MB - Last synced at: 24 days ago - Pushed at: 24 days ago - Stars: 3 - Forks: 1

PavlidisLab/rnaseq-pipeline

RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.

Language: Shell - Size: 43.5 MB - Last synced at: 12 days ago - Pushed at: 12 days ago - Stars: 24 - Forks: 5

mehdiborji/nanoranger

simplified cellranger for long-read data

Language: Python - Size: 50.3 MB - Last synced at: 24 days ago - Pushed at: 25 days ago - Stars: 18 - Forks: 5

adnantariq6400/Identification-of-key-taxonomic-and-metabolic-players

Metagenome Project

Language: Shell - Size: 7.81 KB - Last synced at: 26 days ago - Pushed at: 26 days ago - Stars: 0 - Forks: 0

Sentieon/sentieon-google-genomics

Run Sentieon pipelines on Google Cloud Platform

Language: Shell - Size: 127 KB - Last synced at: 29 days ago - Pushed at: 29 days ago - Stars: 6 - Forks: 7

niekwit/damid-seq

Snakemake workflow for DamID-Seq analysis

Language: Python - Size: 83.2 MB - Last synced at: 29 days ago - Pushed at: 30 days ago - Stars: 3 - Forks: 0

nmendozam/kir-mapper

Nextflow pipeline for kir-mapper map

Language: Nextflow - Size: 3.91 KB - Last synced at: 30 days ago - Pushed at: 30 days ago - Stars: 0 - Forks: 0

pritampanda15/YouTube-Tutorials

Tutorials on bioinformatics, computational biology, molecular dynamics, and other specialized scientific tools and workflows.

Size: 2.95 MB - Last synced at: 6 days ago - Pushed at: 6 months ago - Stars: 1 - Forks: 0

biowdl/tasks

A collection of reusable WDL tasks. Category:Other

Language: WDL - Size: 1.82 MB - Last synced at: 18 days ago - Pushed at: 18 days ago - Stars: 86 - Forks: 30

chanzuckerberg/czid-web

Infectious Disease Sequencing Platform

Language: TypeScript - Size: 466 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 84 - Forks: 25

YichaoOU/HemTools

HemTools: a collection of NGS pipelines and bioinformatic analyses

Language: Python - Size: 876 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 69 - Forks: 21

saketkc/pysradb

Package for fetching metadata and downloading data from SRA/ENA/GEO

Language: Python - Size: 7.09 MB - Last synced at: 27 days ago - Pushed at: 3 months ago - Stars: 326 - Forks: 57

ImagoXV/NanoASV

NanoASV official repo

Language: Shell - Size: 86.4 MB - Last synced at: 29 days ago - Pushed at: about 2 months ago - Stars: 9 - Forks: 3

pbradleylab/2023-anvio-comparison

Comparison of multiple annotation methods (Kofamscan, Microbeannotator, and anvi'o) using multiple prokaryotic families found across varying environments.

Language: R - Size: 242 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 1 - Forks: 0

r3fang/SnapATAC

Analysis Pipeline for Single Cell ATAC-seq

Language: R - Size: 170 MB - Last synced at: about 10 hours ago - Pushed at: about 2 years ago - Stars: 317 - Forks: 131

CDCgov/seqsender

Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories

Language: Python - Size: 261 MB - Last synced at: 28 days ago - Pushed at: about 1 month ago - Stars: 35 - Forks: 14

DIncalciLab/samurai

A bioinformatics best-practice analysis pipeline for the analysis of shallow whole genome sequencing (sWGS) data for the identification of copy number alterations (CNAs).

Language: Nextflow - Size: 3.98 MB - Last synced at: 12 days ago - Pushed at: 13 days ago - Stars: 10 - Forks: 0

dieterich-lab/Baltica

Baltica: integrated differential junction usage

Language: R - Size: 57.6 MB - Last synced at: 27 days ago - Pushed at: about 2 years ago - Stars: 10 - Forks: 3

Aaryesh-AD/Bacterial-Genomics-Pipeline-BIOL7210

A Nextflow pipeline for bacterial genome assembly, annotation, and functional gene discovery developed as part of GT BIOL7210 Computational Genomics Course.

Language: Nextflow - Size: 391 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

bioinfo-core-BGU/neatseq-flow

A Lightweight Software for Efficient Execution of High Throughput Sequencing Workflows

Language: Python - Size: 3.75 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 3 - Forks: 4

medvir/VirMet

Set of tools for viral metagenomics.

Language: Python - Size: 1.19 MB - Last synced at: 16 days ago - Pushed at: 16 days ago - Stars: 14 - Forks: 5

Alepidoptera7/assembly_scaffold_BLAST

Algorithm to parse, assemble and align genomic sequences by use machine learning techniques. The resulting sequences are used to form NCBI-BLAST respects and return sequence homologs.

Language: Python - Size: 8.79 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

sanger-pathogens/Roary

Rapid large-scale prokaryote pan genome analysis

Language: Perl - Size: 17.7 MB - Last synced at: about 1 month ago - Pushed at: about 3 years ago - Stars: 340 - Forks: 190

sanger-pathogens/circlator

A tool to circularize genome assemblies

Language: Python - Size: 25.7 MB - Last synced at: 19 days ago - Pushed at: about 1 year ago - Stars: 240 - Forks: 57

scipipe/scipipe

Robust, flexible and resource-efficient pipelines using Go and the commandline

Language: Go - Size: 1.06 MB - Last synced at: about 1 month ago - Pushed at: 9 months ago - Stars: 1,094 - Forks: 72

soedinglab/transannot

TransAnnot - a fast transcriptome annotation pipeline

Language: C - Size: 78.6 MB - Last synced at: 14 days ago - Pushed at: 4 months ago - Stars: 15 - Forks: 1

nickjcroucher/gubbins

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

Language: Python - Size: 9.69 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 184 - Forks: 53

Ddafnoudis/Building-bioinformatic-workflows

Building bionformatics workflows using bash scripting.

Language: Shell - Size: 5.86 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

ngless-toolkit/ngless

NGLess: NGS with less work

Language: Haskell - Size: 14.1 MB - Last synced at: 28 days ago - Pushed at: about 2 months ago - Stars: 146 - Forks: 25

dissipative/awesome-bio-go

A curated list of Bioinformatics software written in the Go language.

Language: Makefile - Size: 5.86 KB - Last synced at: 5 days ago - Pushed at: over 1 year ago - Stars: 21 - Forks: 1

nsalomonis/altanalyze

AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.

Language: Python - Size: 264 MB - Last synced at: 1 day ago - Pushed at: almost 3 years ago - Stars: 103 - Forks: 31

ZealousGeneticist/cartoflow

A Python workflow for taking chemicals, finding the genes they interact with, and mapping the communities of genetic interactions.

Language: Python - Size: 63.5 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 2 - Forks: 0

infocusp/scaLR

Single cell analysis using Low Resource

Language: Python - Size: 166 MB - Last synced at: 3 days ago - Pushed at: about 2 months ago - Stars: 16 - Forks: 0

NorwegianVeterinaryInstitute/DemultiplexRawSequenceData

A workflow automation script: demultiplex the library sequence, run quality checks, deliver to archiving and processing afterwards

Language: Python - Size: 501 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 1 - Forks: 0

ayoraind/strainberry

Nextflow Pipeline for Strain Resolution from Long Reads

Language: Nextflow - Size: 21.5 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 1 - Forks: 0

dvklopfenstein/ReactomePy

Explore biomolecular pathways in Reactome from the command-line or a Python script

Language: Python - Size: 17.1 MB - Last synced at: about 1 month ago - Pushed at: 7 months ago - Stars: 23 - Forks: 4

fomightez/pdbepisa-binder

Using data from PDBePISA with the convenience of Python and Jupyter.

Language: Jupyter Notebook - Size: 1.48 MB - Last synced at: about 1 month ago - Pushed at: 6 months ago - Stars: 6 - Forks: 1

rribeiro-sci/SSBtoolkit

Simulation of pharmacodynamic models of drug-GPCR (class A) interactions.

Language: Python - Size: 12.8 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 1 - Forks: 1

DavideBrex/SpikeFlow

Pipeline to analyse ChIP-Rx data, i.e ChIP-Seq with reference exogenous genome spike-in normalization

Language: Python - Size: 723 MB - Last synced at: 28 days ago - Pushed at: 3 months ago - Stars: 11 - Forks: 0

SosaAElie/PersonalR-DTools

A series of automations intended to standardize research workflow.

Language: JavaScript - Size: 20.8 MB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 0 - Forks: 0

cihga39871/Pipelines.jl

A lightweight and powerful Julia package for computational pipelines and workflows.

Language: Julia - Size: 1.05 MB - Last synced at: 1 day ago - Pushed at: 4 months ago - Stars: 49 - Forks: 2

ShujiaHuang/ilus

A lightweight and handy variant calling pipeline generator for whole-genome sequencing (WGS) and whole exom sequencing data (WES) analysis by using GATK and Sentieon. 一个基于 GATK 和 Sentieon 的简易且全面的 WGS/WES 分析流程生成器.

Language: Python - Size: 845 KB - Last synced at: 28 days ago - Pushed at: 4 months ago - Stars: 132 - Forks: 35

aofarrel/clockwork-wdl

WDLization of clockwork

Language: WDL - Size: 13.8 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0

pwwang/biopipen

A set of processes/pipelines for bioinformatics

Language: R - Size: 42.6 MB - Last synced at: 11 days ago - Pushed at: about 1 month ago - Stars: 13 - Forks: 5

bobeobibo/phigaro

Phigaro is a scalable command-line tool for predicting phages and prophages

Language: HTML - Size: 6.8 MB - Last synced at: 22 days ago - Pushed at: over 1 year ago - Stars: 51 - Forks: 15

sanger-pathogens/snp-sites

Finds SNP sites from a multi-FASTA alignment file

Language: C - Size: 14.7 MB - Last synced at: about 1 month ago - Pushed at: over 4 years ago - Stars: 257 - Forks: 49

Sentieon/sentieon-dnascope-ml

Sentieon DNAscope + Machine Learning Model

Language: Shell - Size: 111 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 12 - Forks: 4

pepkit/looper

A job submitter for Portable Encapsulated Projects

Language: Python - Size: 4.18 MB - Last synced at: 16 days ago - Pushed at: 2 months ago - Stars: 22 - Forks: 7

yodeng/runjob

runjob is a program for managing a group of related jobs running on a compute cluster

Language: Python - Size: 1.18 MB - Last synced at: 3 days ago - Pushed at: about 2 months ago - Stars: 10 - Forks: 4

GenomiqueENS/eoulsan

A pipeline and a framework for NGS analysis (RNA-seq and scRNA-seq)

Language: Java - Size: 305 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 52 - Forks: 10