Daylily-Informatics/daylily

A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing FASTQ to snvVCF in <60m, for dollars a sample and achieving Fscores of 0.998.

Language: WDL - Size: 297 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 23 - Forks: 2

pfeiferd/genestrip-db

A selection of databases for Genestrip

Language: Shell - Size: 80.1 KB - Last synced at: 1 day ago - Pushed at: 2 days ago - Stars: 1 - Forks: 0

pfeiferd/genestrip

Genestrip - Efficient read classification, filtering and k-mer counting for selected groups of species

Language: Java - Size: 94.6 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 6 - Forks: 0

KarchinLab/open-cravat

A modular annotation tool for genomic variants

Language: JavaScript - Size: 9.18 MB - Last synced at: 3 days ago - Pushed at: 4 days ago - Stars: 120 - Forks: 31

FunctionLab/selene

a framework for training sequence-level deep learning networks

Language: Jupyter Notebook - Size: 151 MB - Last synced at: 1 day ago - Pushed at: 4 months ago - Stars: 380 - Forks: 91

thierrygosselin/radiator

RADseq Data Exploration, Manipulation and Visualization using R

Language: HTML - Size: 11 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 59 - Forks: 23

madsondeluna/api_request_NCBI

This repository contains a Python script that queries NCBI to retrieve detailed information about SNPs (Single Nucleotide Polymorphisms) and parses the returned data. The script makes a request to the NCBI API, parses the XML data, and organizes the information into tables using pandas.

Language: Python - Size: 287 KB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 0 - Forks: 0

Sentieon/sentieon-google-genomics

Run Sentieon pipelines on Google Cloud Platform

Language: Shell - Size: 127 KB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 6 - Forks: 7

ArpiarSaundersLab/annsql

The AnnSQL package enables SQL based queries on AnnData objects.

Language: Python - Size: 7.91 MB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 16 - Forks: 0

muellan/metacache

memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping

Language: C++ - Size: 149 MB - Last synced at: 11 days ago - Pushed at: 19 days ago - Stars: 59 - Forks: 13

thierrygosselin/stackr

stackr: an R package to run stacks software pipeline

Language: HTML - Size: 20.9 MB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 29 - Forks: 8

tanaylab/misha

Genomic data analysis suite

Language: C++ - Size: 27.9 MB - Last synced at: 12 days ago - Pushed at: 12 days ago - Stars: 4 - Forks: 1

thom22/Predicting-Colorectal-Cancer-IO-Therapy-Outcomes-via-ML-using-MSI-and-Gene-Mutation-Status

Size: 145 KB - Last synced at: 24 days ago - Pushed at: 24 days ago - Stars: 0 - Forks: 0

bcgsc/ntRoot

🌳 Human ancestry inference from genomic data

Language: Python - Size: 84.2 MB - Last synced at: 1 day ago - Pushed at: 25 days ago - Stars: 6 - Forks: 0

meilerlab/vustruct

VUStruct analyses sets of Variants of Unknown Significance (VUSs) by contextualizing them in 3D protein structural space.

Language: Python - Size: 6.5 MB - Last synced at: 25 days ago - Pushed at: 25 days ago - Stars: 0 - Forks: 0

INMEGEN/Pipelines_Inmegen

Flujos de trabajos desarrollados y automatizados en el Intituto Nacional de Medicina Genómica para el procesamiento de datos genómicos y transcriptómicos.

Language: Nextflow - Size: 7.37 MB - Last synced at: 25 days ago - Pushed at: 25 days ago - Stars: 9 - Forks: 0

CDCgov/MicrobeTrace Fork of AABoyles/MicrobeTrace

The Visualization Multitool for Molecular Epidemiology and Bioinformatics

Language: TypeScript - Size: 140 MB - Last synced at: 13 days ago - Pushed at: 14 days ago - Stars: 92 - Forks: 41

bobeobibo/phigaro

Phigaro is a scalable command-line tool for predicting phages and prophages

Language: HTML - Size: 6.8 MB - Last synced at: 1 day ago - Pushed at: over 1 year ago - Stars: 51 - Forks: 15

Tzeene1459/Differential-Gene-Expression-Analysis-of-Alzheimers-Disease-Patients-

Differential Gene and Enrichment Analysis of Patients with Alzheimer's Disease

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Tzeene1459/DGE-and-Enrichment-Analysis-for-Bladder-Cancer-Patients

Differential Gene Expression Analysis and Enrichment Analysis for Patients with Bladder Cancer

Language: HTML - Size: 81.5 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0

nathadriele/biophenotype-rag

This project implements a RAG (Retrieval-Augmented Generation) application to answer questions about phenotypes using biological and genomic data. The pipeline integrates information retrieval with response generation via language models (LLM), facilitating accurate analysis of phenotypic data.

Language: Jupyter Notebook - Size: 584 KB - Last synced at: 14 days ago - Pushed at: 3 months ago - Stars: 6 - Forks: 0

AABoyles/MicrobeTrace

The Visualization Multitool for Molecular Epidemiology and Bioinformatics

Language: HTML - Size: 68.5 MB - Last synced at: 8 days ago - Pushed at: 7 months ago - Stars: 12 - Forks: 42

kishwarshafin/helen

H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)

Language: Python - Size: 7.27 MB - Last synced at: 11 days ago - Pushed at: over 4 years ago - Stars: 70 - Forks: 10

TomKellyGenetics/graphsim

R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)

Language: R - Size: 35.8 MB - Last synced at: 7 days ago - Pushed at: over 2 years ago - Stars: 24 - Forks: 7

linas/biome-distribution

Research into statistical distributions of genomes, proteomes and reactomes

Language: Scheme - Size: 14.2 MB - Last synced at: about 1 month ago - Pushed at: about 3 years ago - Stars: 6 - Forks: 0

xinglab-ai/genomap

Cartography of Genomic Interactions Enables Deep Analysis of Single-Cell Expression Data (Nature Communications, 2023)

Language: Python - Size: 43.7 MB - Last synced at: about 1 month ago - Pushed at: 11 months ago - Stars: 15 - Forks: 3

genular/pandora

PANDORA :computer:

Language: Vue - Size: 16.4 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 135 - Forks: 21

mt1022/gppy

[G]enomic [P]ositioning with [Py]thon

Language: Python - Size: 2.99 MB - Last synced at: about 1 month ago - Pushed at: 5 months ago - Stars: 8 - Forks: 2

Waghati/ebola_prediction_project

A machine learning project focused on predicting genetic shifts in future Ebola outbreaks using genomic data. The project analyzes historical Ebola sequences to forecast potential mutations and viral characteristics, aiding in outbreak preparedness and public health responses.

Size: 4.88 KB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

JoachimGoedhart/VolcaNoseR

Shiny app for making and annotating Volcano plots

Language: R - Size: 485 KB - Last synced at: 5 months ago - Pushed at: 8 months ago - Stars: 21 - Forks: 7

dinesh2k19/Host-Plant-Rhizosphere-Microbiome

Host plant rhizosphere microbiome analysis

Size: 5.86 KB - Last synced at: 6 months ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0

cellular-genomics/python-FIREcaller

FIREcaller: Python library for detecting Frequently Interacting REgions (FIREs) from Hi-C data

Language: Python - Size: 21.5 KB - Last synced at: 1 day ago - Pushed at: about 3 years ago - Stars: 5 - Forks: 1

sharu29/UNIX-course--2021

This the final exercise for the completion of the UNIX and genomic data course 2021 at Charles University

Language: R - Size: 102 KB - Last synced at: 8 months ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

strumenti-formali-per-la-bioinformatica/tumor-classification

[a.a. 22/23] G. Antonucci, N. Pagliara

Language: TeX - Size: 24.1 MB - Last synced at: 9 months ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 1

gnoanto94/tumor-classification

[a.a. 22/23] G. Antonucci, N. Pagliara

Language: Python - Size: 3.3 MB - Last synced at: 9 months ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

SlowSD/Tutorial-Next-Generation-Sequence-Analysis

This repository summarizes complete NGS analysis for a beginner.

Size: 1.31 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

vaishnavipaithane/Genomic-Data-and-Management-Analysis

This miniproject is part of 'Fundamentals of Python Programming' virtual internship conducted by Nyberman Bioinformatics, Europe.

Language: Python - Size: 22.5 KB - Last synced at: about 2 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

laurentnoe/yass

genomic alignment similarity search tool

Language: C - Size: 509 KB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 18 - Forks: 6

Matthew-Mosior/Basic-Variant-Tools

Command-line toolkit for genomic datasets.

Language: Haskell - Size: 81.1 KB - Last synced at: 12 months ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0

bernatgel/regioneR

An R/Bioconfuctor package for association analysis of genomic regions based on permutation tests

Language: R - Size: 1.16 MB - Last synced at: 11 months ago - Pushed at: over 1 year ago - Stars: 13 - Forks: 3

zhaoxiaofei/bindash

Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop

Language: C++ - Size: 985 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 51 - Forks: 7

CBIIT/Misteli-Lab-CCR-NCI

Collection of statistical scripts, image analysis workflows, data used in publications by the Misteli Lab.

Language: HTML - Size: 69.6 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 15 - Forks: 3

ovsama/Genomic_Data_Science

Here is a whole bunch of genomic data analyses using Bioconductor packages. The files are found in the form of .R files.

Language: R - Size: 178 KB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

icaromsc/WGCA

JAMIRA is a reproducible Workflow for Integrative Exploration of Genomic Features of prokariotes

Language: Python - Size: 629 MB - Last synced at: about 1 year ago - Pushed at: over 4 years ago - Stars: 8 - Forks: 2

MaryAgopian/Variant_Barcoding_M.orygis

Variant barcoding pipeline using single nucleotide polymorphisms (SNPs) for the generation of M. orygis standardised markers for diagnostic and epidemiological use.

Language: R - Size: 55.7 KB - Last synced at: about 1 year ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

shilab/DP-MIA Fork of work-hard-play-harder/DP-MIA

Differential Privacy Protection against MembershipInference Attack on Machine Learning for Genomic Data

Language: Python - Size: 2.39 MB - Last synced at: about 1 year ago - Pushed at: over 4 years ago - Stars: 13 - Forks: 3

mrdanieleze/Genomic-Sequence-Comparison-Code-GSCC-

This repository houses the Genomic Sequence Comparison Code (GSCC), a collection of Python scripts designed for genomic sequence analysis. Whether you're comparing suspected sequences with known reference sequences or delving into bioinformatics, GSCC provides versatile tools for pairwise alignment. Feel free to explore!

Language: Python - Size: 26.4 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 2 - Forks: 0

LilQuacky/covid-genome-variation

A Python script that uses MAFFT to align SARS-CoV-2 genomes with respect to the reference genome, identifying and reporting pointwise variations compared to the reference, along with comparative statistics on the analyzed genomes.

Language: Python - Size: 160 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

aliafzal/Identification-of-mislabeling-data-using-ML

Overcome mislabeling errors in genomics training sets by utilizing machine learning on AWS EC2 and Apache Spark.

Language: Jupyter Notebook - Size: 28.4 MB - Last synced at: about 1 year ago - Pushed at: about 5 years ago - Stars: 2 - Forks: 0

hsaxe/Omics-Analyst

R package to facilitate omics analyses

Language: R - Size: 50.8 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

mattssca/BioMaesteR

R package with convenience functions commonly requested in various types of genomic analysis within R.

Language: R - Size: 95.2 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

adeschen/consensusSeekeR

This R package compares genomic positions and genomic ranges from multiple experiments to extract common regions. The size of the analyzed region is adjustable as well as the number of experiences in which a feature must be present in a potential region to tag this region as a consensus region. Tested on ChIP-Seq peaks and nucleosome positions.

Language: R - Size: 9.06 MB - Last synced at: 8 days ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0

Shaked35/Genome-AC-GAN

This repository provides tools to train and evaluate the Genome-AC-GAN model for generating realistic artificial human genomes.

Language: Jupyter Notebook - Size: 105 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 1

ccneko/OMACASE

an open-source (GPLv3) standalone Python package to analyze optical mapping data, with de novo repeat motif detection and analysis capabilities

Language: Python - Size: 2.74 MB - Last synced at: 29 days ago - Pushed at: almost 3 years ago - Stars: 1 - Forks: 0

biomguler/G-WASPiper

This repository is my collection of pipelines for basic GWAS analysis, written in R to simplify, please cite original tools/approaches referred in the pipelines.

Language: R - Size: 5.41 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 2 - Forks: 0

rjdkmr/gcMapExplorer

Genome Contact Map Explorer - gcMapExplorer. Visit:

Language: Python - Size: 5.05 MB - Last synced at: 15 days ago - Pushed at: about 3 years ago - Stars: 21 - Forks: 9

mindleaving/genome-tools

Tools for exploration and analysis of biochemical data like genomics and proteins

Language: C# - Size: 905 KB - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 4 - Forks: 2

ikergarcia1996/Gene2Tab

This script is used to convert the output of ABRICATE tabulated output into a matrix samples with the genes as columns and the presence/absence of the gene as the values.

Language: Python - Size: 28.3 KB - Last synced at: 13 days ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

epiviz/epivizFileServer

Python library to query and transform genomic data from indexed files

Language: Python - Size: 16.7 MB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 5 - Forks: 4

jlt3/ERCEs_2023

Scripts from Turner et al 2023 "Master transcription factor binding sites are necessary for early replication control element activity"

Language: Shell - Size: 5.86 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

HuntsmanCancerInstitute/GQuery

GQuery is a software tool for rapidly querying large numbers of bgzip compressed, tabix indexed genomic data files e.g. vcf, maf, bed, bedGraph, etc. from multiple species with different genome builds without the need to develop, debug, and maintain custom file parsers. Search for particular germline or somatic mutations, copy number changes, differentially expressed genes, epigenetic marks, anything that can be associated with genomic coordinates. Just point the GQuery indexer at a collection of tabix indexed files and then run either the GQuery command line app or the web API to search them. GQuery is built using a fast, multi-threaded, genomic range search engine with extensive junit testing.

Language: C - Size: 4.69 MB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 2 - Forks: 0

JuhunC/NICER

NICE Renew

Language: HTML - Size: 2.19 GB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 2

gdurif/pCMF

pCMF R package

Language: C++ - Size: 271 KB - Last synced at: over 1 year ago - Pushed at: about 6 years ago - Stars: 11 - Forks: 0

cellular-genomics/cluster-paired-end-tags

Script to cluster Paired End Tags (PETs) from chromatin conformation capture (3C) experiments

Language: Python - Size: 251 KB - Last synced at: over 1 year ago - Pushed at: about 4 years ago - Stars: 3 - Forks: 1

rbr7/bioinformatics_courses

A repository for maintaining assignments and projects, from courses done in bioinformatics and CB.

Language: Jupyter Notebook - Size: 10.4 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

D4GEN-Genopole/GARDS-CHSF

Méthodes pour la FAIRification des (méta) données Omics - Projet porté par Mohanad MAHFOUD - CHSF

Size: 2.49 MB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0

yumatchlab/solidity-stringutils Fork of sensecollective/solidity-stringutils

Basic string utilities for Solidity

Size: 18.6 KB - Last synced at: over 1 year ago - Pushed at: over 8 years ago - Stars: 0 - Forks: 0

alexjschiffer/AutoEmma

Automated Efficient Mixed Model Association Studies - R Package

Language: R - Size: 15.1 MB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 3 - Forks: 0

revaoleg/SeqWord

Programs for genomic, genome linguistics and metagenomics

Size: 13.7 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

hyperbrowser/genomic-hyperbrowser Fork of elixir-oslo/proto

The GSuite HyperBrowser - the new version of the Genomic HyperBrowser, currently forked from Galaxy v16.01

Language: Python - Size: 364 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 2 - Forks: 1

Byronxy/GEO

learn R by rote

Language: HTML - Size: 10.4 MB - Last synced at: over 1 year ago - Pushed at: almost 6 years ago - Stars: 0 - Forks: 0

thierrygosselin/grur

grur: an R package tailored for RADseq data imputations

Language: R - Size: 7.46 MB - Last synced at: 12 months ago - Pushed at: over 4 years ago - Stars: 7 - Forks: 0

HannahVMeyer/LiMMBoAnalysis

Language: R - Size: 8.47 MB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 3 - Forks: 0

ValeriaP5/Peculiar-Statistics-of-the-Forward-and-Reverse-Half-Strands

Python applications to Genomics

Size: 2.93 KB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 1 - Forks: 0

uab-cgds-worthey/DITTO4NF

Easy to use web interface for biologists to look for NF1 variants and understand their deleteriousness using DITTO scores.

Language: Jupyter Notebook - Size: 206 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 2 - Forks: 0

kaymers/MetaG

MetaG is a comprehensive metagenomic visualization tool. MetaG displays lower dimensional representations of high throughput metagenomic sequence reads using deep-learning techniques. MetaG will provide additional taxonomic details of the composition of a given metagenome using its pipeline based on BLAST.

Language: Python - Size: 11.1 MB - Last synced at: over 1 year ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 1

mtsz-thiago/AnGRA

Biblioteca para análise de genômica de resistência a antibióiticos.

Language: Dockerfile - Size: 825 KB - Last synced at: over 1 year ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

fjdf/slaMEM

Finding Maximal Exact Matches (MEMs) using a Sampled LCP Array

Language: C - Size: 566 KB - Last synced at: over 1 year ago - Pushed at: about 8 years ago - Stars: 10 - Forks: 5

Pintaius/LDmergeFM

Generating a weighed average of LDSTORE matrices for locus-based fine-mapping.

Language: R - Size: 736 KB - Last synced at: over 1 year ago - Pushed at: about 4 years ago - Stars: 2 - Forks: 0

ishamada/bioiX

PCA on Genotypes

Language: Python - Size: 1.73 MB - Last synced at: 8 days ago - Pushed at: over 2 years ago - Stars: 8 - Forks: 0

snystrom/vplot

A commandline tool for generating vplot matrices from paired end sequencing data such as MNase-seq, ATAC-seq, or CUT&RUN.

Language: Rust - Size: 134 KB - Last synced at: 12 months ago - Pushed at: almost 3 years ago - Stars: 2 - Forks: 1

jakublipinski/build-deepsea-training-dataset

Build DeepSea training dataset from raw data

Language: Python - Size: 13.9 MB - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 14 - Forks: 1

PlantDr430/CSU_scripts

Scripts created at CSU as a PhD student for genomic annotations and comparisons.

Language: Python - Size: 172 KB - Last synced at: about 2 years ago - Pushed at: almost 5 years ago - Stars: 3 - Forks: 1

programerkotik/Cancer-Genomics-Data-Analysis

Cancer Genomics Data Analysis exercise for the course Analytical Methods in Cancer Genomics 2023. The goal of the exercise is to generate a read-depth plot for human cancer sample.

Language: Python - Size: 190 KB - Last synced at: almost 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

thierrygosselin/gotedna

Guidance on optimal eDNA sampling periods to develop, optimize and interpret monitoring programs

Language: R - Size: 860 KB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0

Poissonfish/iPat

iPat allows you to perform GWAS and GS with drags and clicks!

Language: Java - Size: 128 MB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 10 - Forks: 2

andrealauria104/ngsRtools

A Suite of R Packages for NGS-based Epigenomic Data Analysis.

Language: R - Size: 714 KB - Last synced at: about 1 year ago - Pushed at: about 2 years ago - Stars: 2 - Forks: 1

deprodas/Statistical-Genomics-BMBDU

Repository to support my classmates with their Master's Thesis project at BMB-DU.

Language: R - Size: 11.7 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

stefankusch/genome_Myriosclerotinia_2020 📦

Genome assembly (short and long read) and quality control.

Size: 114 KB - Last synced at: 11 months ago - Pushed at: almost 5 years ago - Stars: 1 - Forks: 3

guillaume-gricourt/HmnTrimmer

Fast-polyvalent trimmer used for several applications of next-generation sequencing

Language: HTML - Size: 11.9 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 1

sooraj14072001/TEAM-GENOMICS_ONE

Team Genomics One is a group of Bioinformatics enthusiasts gathered together from around the globe , to learn and move forward in solving biological myths by analyzing various types of biological data. We believe Team Work is Dream Work!!!

Size: 2.56 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0

genomematt/xenomapper2

A utility for splitting mixed origin NGS reads with secondary or alt mappings

Language: Python - Size: 1.04 MB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 3 - Forks: 1

BCCDC-PHL/ncov-recombinant-nf

Nextflow wrapper for ktmeaton/ncov-recombinant

Language: Python - Size: 36.1 KB - Last synced at: about 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

dgreenhoe/symbolic-sequence-processing

C++ code for symbolic sequence processing, including genomic sequence processing (GSP)

Language: C++ - Size: 770 KB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

BrianSanderson/salix-nigra-slr

Bioinformatic pipeline for genetic mapping using a novel genome sequencing platform

Language: Jupyter Notebook - Size: 2.55 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

BrianSanderson/phylo-seq-cap

Bioinformatic pipeline for phylogenetics and population genomics using a novel genome sequencing platform

Language: Jupyter Notebook - Size: 2.14 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

gibbslab/biobash Fork of ampinzonv/biobash

Common BASH routines for computational biology

Language: Shell - Size: 17.6 MB - Last synced at: about 2 years ago - Pushed at: almost 3 years ago - Stars: 2 - Forks: 3

AndroidSim/Bioinformatics

A collection of projects in bioinformatics.

Language: C - Size: 5.43 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

Cloud-SPAN/01genomics

Project management for cloud genomics

Language: Python - Size: 5.6 MB - Last synced at: 8 days ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

CEA-LIST/sgntx

iDASH 2017 competition, track 2 winning team solution

Language: Rust - Size: 45.9 KB - Last synced at: about 2 months ago - Pushed at: over 6 years ago - Stars: 8 - Forks: 0