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GitHub / thierrygosselin / radiator
RADseq Data Exploration, Manipulation and Visualization using R
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/thierrygosselin%2Fradiator
Stars: 57
Forks: 22
Open Issues: 2
License: gpl-3.0
Language: HTML
Repo Size: 9.68 MB
Dependencies:
41
Created: almost 7 years ago
Updated: 17 days ago
Last pushed: 17 days ago
Last synced: 3 days ago
Topics: artifacts-detection, batch-effects, filter, gbs, genetics, genomic-data-analysis, genomics, genomics-visualization, genotype-likelihoods, genotyping-by-sequencing, heterozygosity, imputation, missingness, normalization, outliers, outliers-detection, paralogs, radseq, radseq-data, visualization
Files
Dependencies
- R >= 3.5.0 depends
- HardyWeinberg * imports
- SeqArray >= 1.28.1 imports
- UpSetR * imports
- carrier * imports
- data.table * imports
- dplyr >= 1.0.0 imports
- fst >= 0.8.4 imports
- furrr >= 0.2.0 imports
- ggpubr * imports
- magrittr * imports
- tidyverse * imports
- BiocManager * suggests
- SNPRelate * suggests
- adegenet * suggests
- amap * suggests
- devtools * suggests
- future * suggests
- gdsfmt * suggests
- ggplot2 * suggests
- knitr * suggests
- methods * suggests
- parallel * suggests
- progressr * suggests
- purrr * suggests
- quantreg * suggests
- readr >= 2.1.0 suggests
- rlang * suggests
- rmarkdown * suggests
- stats * suggests
- stringdist * suggests
- stringi * suggests
- tibble * suggests
- tidyr >= 1.1.0 suggests
- tidyselect * suggests
- utils * suggests
- actions/cache v2 composite
- actions/checkout v2 composite
- actions/upload-artifact main composite
- r-lib/actions/setup-pandoc v1 composite
- r-lib/actions/setup-r v1 composite