Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: paralogs
thierrygosselin/radiator
RADseq Data Exploration, Manipulation and Visualization using R
Language: HTML - Size: 9.68 MB - Last synced: 17 days ago - Pushed: about 1 month ago - Stars: 57 - Forks: 22
edgardomortiz/Captus
Assembly of Phylogenomic Datasets from High-Throughput Sequencing data
Language: Python - Size: 75.3 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 13 - Forks: 5
V-Z/hybseq-scripts
Set of scripts to process HybSeq target enrichment HTS data (on computing grids).
Language: Shell - Size: 2.31 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 4 - Forks: 3
lyy005/Aphid_AL4_chromosome_assembly
The analytical pipeline of the AL4 strain genome
Language: R - Size: 1.01 MB - Last synced: 8 months ago - Pushed: over 4 years ago - Stars: 2 - Forks: 4
Rinoahu/SwiftOrtho
A high performance tool to identify orthologs and paralogs across genomes.
Language: Python - Size: 20.1 MB - Last synced: 7 months ago - Pushed: about 1 year ago - Stars: 22 - Forks: 12
ChrisCreevey/clan_check
Check trees for compatibility with defined groupings in unrooted trees - "The incontestable clan test"
Language: C - Size: 43 KB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 3 - Forks: 2
vivekruhela/miRPipe
miRPipe: Open source RNA-Seq bioinformatics analysis docker for identification of miRNAs and piRNAs
Language: Python - Size: 99.4 MB - Last synced: 10 months ago - Pushed: 10 months ago - Stars: 3 - Forks: 3
Arkadiy-Garber/ParaHunter
Identification of gene paralogs in genomes, and calculation of dS and dN/dS values for paralogous gene pairs
Language: Python - Size: 73.2 KB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 2 - Forks: 0
tseemann/noary
🍣 🦐 A lightweight nucleotide bacterial ortholog clustering tool
Language: Perl - Size: 23.4 KB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 6 - Forks: 2
lvn3668/paralogIdentification
Wrapper script that calls formatdb on nr database and then runs blastall against formatted db and parses the output.
Language: Perl - Size: 3.18 MB - Last synced: 2 months ago - Pushed: almost 3 years ago - Stars: 1 - Forks: 0
