steineggerlab/foldseek

Foldseek enables fast and sensitive comparisons of large structure sets.

Language: C - Size: 33.8 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 974 - Forks: 125

bcgsc/HLAminer

⛏ HLA predictions from NGS shotgun data

Language: Perl - Size: 167 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 52 - Forks: 15

telatin/covtobed

⛰ covtobed | Convert the coverage track from a BAM file into a BED file

Language: C++ - Size: 56 MB - Last synced at: 4 days ago - Pushed at: about 3 years ago - Stars: 44 - Forks: 3

Alepidoptera7/mtReptile-

Files pertaining to the processing of NGS data in .fasta.gz format for the purposes of identifying the genomic sequences which belong to either of the tuataras dual mitochondrial genomes.

Language: Python - Size: 26.4 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0

behnamazimi/curly-html-elements

Mini tool for arranging HTML elements along with ellipse subset shapes

Language: JavaScript - Size: 218 KB - Last synced at: 1 day ago - Pushed at: over 4 years ago - Stars: 15 - Forks: 1

litefeel/Unity-AlignTools

Align Tools is just perfect Unity asset plugin to align gui object

Language: C# - Size: 592 KB - Last synced at: 12 days ago - Pushed at: almost 4 years ago - Stars: 106 - Forks: 26

IBCHgenomic/phyloevolve

phylogenomics tools for genome, metagenome, pangenome

Language: Rust - Size: 57.6 KB - Last synced at: about 2 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

PathoGenOmics-Lab/snpick

snpick is a fast and memory-efficient Rust-based SNP extraction tool designed to handle large genomic alignments with minimal RAM usage and high-speed performance.

Language: Rust - Size: 166 KB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 3 - Forks: 0

UniBoDS4H/IA

Fiji / ImageJ plugin for Imaging Alignment. This plugin manages two types of alignment: Manual Alignment and Automatic Alignment.

Language: Java - Size: 102 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 8 - Forks: 1

V-Z/hybseq-scripts

Set of scripts to process HybSeq target enrichment HTS data (on computing grids).

Language: Shell - Size: 2.33 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 4 - Forks: 3

crosenth/moose

dna/rna alignment classifier

Language: Python - Size: 1.08 MB - Last synced at: 2 days ago - Pushed at: 10 months ago - Stars: 0 - Forks: 1

nellore/rail

Scalable RNA-seq analysis

Language: Python - Size: 249 MB - Last synced at: about 1 month ago - Pushed at: over 4 years ago - Stars: 73 - Forks: 11

ammahmoudi/IntroductionToBioinformatics

Homework Solutions for Introduction to Bioinformatics Course as Computer Science B.Sc. Student at Department of Computer Engineering, Sharif University of Technology

Language: Python - Size: 3.51 MB - Last synced at: 2 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 1

ASSERT-KTH/STRAC

STRAC (Scalable Trace Comparison) http://arxiv.org/pdf/1910.03478

Language: Roff - Size: 27.4 MB - Last synced at: about 1 year ago - Pushed at: almost 2 years ago - Stars: 5 - Forks: 0

jessicaparks/SubOptLocalAlign.jl

sub-optimal local pairwise alignments and visualization

Language: Julia - Size: 110 KB - Last synced at: about 1 year ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0

lvn3668/fastqcparser

Python code to compute adatper content in reads, kmer content, per-base-GC content (at a specific position in a read alignment, against reference genome), per base NC content (at a specific position in a read alignment against the reference genome), per base seq quality (across aligned reads), per base sequence content, per base quality scores, per tile sequence quality

Language: Python - Size: 12.7 KB - Last synced at: about 1 year ago - Pushed at: over 3 years ago - Stars: 3 - Forks: 1

Gagniuc/Jupiter-Bioinformatics-V2-experiments

Jupiter Bioinformatics (V2) uses the local sequence alignment algorithm and a few stored experiments for further experimentation on sequence alignment. It is an open source application designed in native JavaScript, that is able to align two sequences/texts in order to match the regions that are similar.

Language: HTML - Size: 25.8 MB - Last synced at: 2 months ago - Pushed at: about 3 years ago - Stars: 3 - Forks: 0

bioteam/covid-bioinformatics

Software tools to collect Coronavirus sequences and create protein and nucleotide HMMs

Language: Python - Size: 22 MB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 4 - Forks: 2

MondecaLabs/INSEE-Alignment

Aligning INSEE SKOS concepts with relevant datasets.

Size: 1.55 MB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 1

niaid/Principles-of-Sequence-Analysis-and-Phylogenetics

Materials for the ACE - Uganda course "Principles of Sequence Analysis and Phylogenetics" given in Spring 2020.

Size: 8.22 MB - Last synced at: over 1 year ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 5

alexdonath/checker_complete-v2

Finding outlier sequences in amino acid multiple sequence alignments.

Language: Perl - Size: 463 KB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

AngeloGith/SeqMerger

SeqMerger is designed to concatenate sequences from multiple aligned FASTA files.

Language: Perl - Size: 15.6 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

AngeloGitH/BioSeqMerger

This Perl script serves as a powerful tool for bioinformatics specialists working with genomic sequence data. It is designed to concatenate sequences from multiple alignment FASTA files.

Language: Perl - Size: 14.6 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

damianosmel/VirusGenoUtil

This is a project to contribute utilities for ViruSurf, a viral db centered in viral sequences.

Language: Python - Size: 116 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

YerevaNN/PARASITE

🪱 PARASITE || A parallel sentence data preprocessing toolkit. Originally developed as a part of the `en-ru` winner submission of WMT20 Biomedical Translation Task.

Language: Python - Size: 426 KB - Last synced at: over 1 year ago - Pushed at: almost 4 years ago - Stars: 11 - Forks: 6

Lucy-Forrest-Lab/AlignMe

Pairwise alignment of membrane protein sequences

Language: C++ - Size: 5.87 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 5 - Forks: 0

svkazakov/ra-visualizer

Genome read alignments visualizer

Language: Python - Size: 5.31 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

soerenmetje/PairAlignment

Finds optimal alignment of two sequences

Language: Java - Size: 58.6 KB - Last synced at: about 2 years ago - Pushed at: about 7 years ago - Stars: 0 - Forks: 0

anebz/thesis

The effects of word segmentation quality on word alignments.

Language: Jupyter Notebook - Size: 87.3 MB - Last synced at: about 1 year ago - Pushed at: about 3 years ago - Stars: 2 - Forks: 0

maxganser/consistency-script

Evaluating the consistency of molecular diagnostic characters (signature characters) detected by DeSignate.

Language: Python - Size: 33.2 KB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

campanam/ucealnstats

Calculate taxon-specific alignment statistics from a collection of UCE alignments

Language: Ruby - Size: 48.8 KB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

jrod2699/CS159-NLP-Final-Project-

Language: JavaScript - Size: 12.2 MB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0

milesroberts-123/convert-blast-to-bed

Convert the output of BLAST to a BED file format that's suitable for uploading to JBrowse.

Language: Python - Size: 19.5 KB - Last synced at: about 2 years ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 1

t-neumann/versalignLib

Showcase of parallelization technologies using sequence alignment algorithms

Language: C++ - Size: 66.9 MB - Last synced at: about 1 month ago - Pushed at: over 8 years ago - Stars: 2 - Forks: 0

aquaskyline/MICA-aligner

MICA-aligner is a new short-read aligner that is optimized in view of MIC's limitation and the extra parallelism inside each MIC core.

Language: C - Size: 1.9 MB - Last synced at: about 1 month ago - Pushed at: over 1 year ago - Stars: 5 - Forks: 2

maxbiostat/MEP_data

Data on measurably evolving populations (MEPs)

Language: R - Size: 309 KB - Last synced at: 24 days ago - Pushed at: about 8 years ago - Stars: 0 - Forks: 0

bcgsc/dida

DIDA Project

Language: C++ - Size: 689 KB - Last synced at: 3 months ago - Pushed at: about 8 years ago - Stars: 2 - Forks: 2