GitHub topics: bed
bedops/bedops
:microscope: BEDOPS: high-performance genomic feature operations
Language: C - Size: 93.9 MB - Last synced at: about 2 hours ago - Pushed at: 25 days ago - Stars: 335 - Forks: 61
databio/bedhost
API and UI for BEDbase
Language: TypeScript - Size: 2.8 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 1 - Forks: 1
chrovis/cljam
A DNA Sequence Alignment/Map (SAM) library for Clojure
Language: Clojure - Size: 35.7 MB - Last synced at: 8 days ago - Pushed at: about 2 months ago - Stars: 91 - Forks: 13
alejandrogzi/gxf2bed
fastest GTF/GFF-to-BED converter chilling around
Language: Rust - Size: 232 KB - Last synced at: 12 days ago - Pushed at: 12 days ago - Stars: 25 - Forks: 1
xjh22222228/boomb
💣 Manage your pictures easily for Github. 基于 Github 轻松管理您的存储图库
Language: Vue - Size: 892 KB - Last synced at: about 23 hours ago - Pushed at: 21 days ago - Stars: 337 - Forks: 52
sigven/gwasOncoX
Cancer variant data from genome-wide association studies (GWAS)
Language: R - Size: 41.4 MB - Last synced at: 22 days ago - Pushed at: 22 days ago - Stars: 2 - Forks: 0
tariqdaouda/pyGeno
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
Language: Python - Size: 10.6 MB - Last synced at: about 5 hours ago - Pushed at: over 1 year ago - Stars: 321 - Forks: 49
huishenlab/iscream
Reading and manipulating WGBS data
Language: R - Size: 5.81 MB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 0 - Forks: 1
clintval/bedspec
An HTS-specs compliant BED toolkit
Language: Python - Size: 120 KB - Last synced at: 9 days ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0
junjunlab/transPlotR
An elegant package to visualize gene structures
Language: R - Size: 239 KB - Last synced at: 15 days ago - Pushed at: about 2 years ago - Stars: 76 - Forks: 4
jcfield-boop/homebridge-SleepMeSimple
Basic Sleepme plugin that exposes the bed devices as HomeKit Thermostat
Language: JavaScript - Size: 21.8 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0
dputhier/pygtftk
A python package and a set of shell commands to handle GTF files
Language: Python - Size: 143 MB - Last synced at: 30 days ago - Pushed at: 11 months ago - Stars: 48 - Forks: 7
alejandrogzi/bed2gff
cool BED-to-GFF3 converter that runs in parallel
Language: Rust - Size: 110 KB - Last synced at: 22 days ago - Pushed at: about 1 month ago - Stars: 9 - Forks: 2
ngualand/ProOvErlap
ProOvErlap - Assessing feature proximity/overlap and testing statistical significance from genomic intervals
Language: Python - Size: 10.5 MB - Last synced at: 6 days ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0
alejandrogzi/bed2gtf
high-performance BED-to-GTF converter written in Rust
Language: Rust - Size: 165 KB - Last synced at: 14 days ago - Pushed at: 6 months ago - Stars: 15 - Forks: 0
MatrixAges/picpic
A awesome image host service driven by github pages and github actions.
Language: JavaScript - Size: 34.3 MB - Last synced at: 7 days ago - Pushed at: almost 4 years ago - Stars: 154 - Forks: 32
telatin/covtobed
⛰ covtobed | Convert the coverage track from a BAM file into a BED file
Language: C++ - Size: 56 MB - Last synced at: 10 days ago - Pushed at: about 3 years ago - Stars: 44 - Forks: 3
Computational-Genomics-BSC/plink-bed-reader
Lightweight and memory efficient reader for PLINK BED files. It supports both SNP-major and individual-major formats. Written in Python.
Language: Python - Size: 3.96 MB - Last synced at: 29 days ago - Pushed at: 3 months ago - Stars: 3 - Forks: 0
alejandrogzi/packbed
pack a .bed into overlapping components
Language: Rust - Size: 303 KB - Last synced at: 25 days ago - Pushed at: about 2 months ago - Stars: 2 - Forks: 0
shencangsheng/pg_bedtools_rs
A PostgreSQL plugin for bedtools, implemented in Rust.
Language: Rust - Size: 12.7 KB - Last synced at: 17 days ago - Pushed at: about 2 months ago - Stars: 2 - Forks: 0
sbslee/fuc
Frequently used commands in bioinformatics
Language: Python - Size: 1.21 MB - Last synced at: 5 days ago - Pushed at: 7 months ago - Stars: 55 - Forks: 7
JetBrains-Research/bioinf-commons
Bioinformatics library in Kotlin
Language: Kotlin - Size: 2.44 MB - Last synced at: about 2 months ago - Pushed at: 2 months ago - Stars: 32 - Forks: 3
lokka30/BedDefender
Stop users from sleeping or changing their respawn points on your Bukkit Server
Language: Java - Size: 32.2 KB - Last synced at: about 20 hours ago - Pushed at: about 3 years ago - Stars: 2 - Forks: 0
CS-Tao/github-content
图床
Language: HTML - Size: 218 MB - Last synced at: 2 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0
michaelkolesidis/sleep-is-a-lie
SLEEP IS A LIE
Language: HTML - Size: 249 KB - Last synced at: 5 days ago - Pushed at: 5 months ago - Stars: 1 - Forks: 0
telatin/bamtocov
🏔 coverage extraction from BAM/CRAM files, supporting targets 📊
Language: Nim - Size: 33.1 MB - Last synced at: 3 months ago - Pushed at: over 2 years ago - Stars: 60 - Forks: 6
chunjie-sam-liu/useful-scripts
common useful script
Language: Shell - Size: 18.5 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 32 - Forks: 33
varda/varda2_preprocessing
Extract coverage information from gVCF and variants from VCF files and output in tabular format.
Language: Python - Size: 81.1 KB - Last synced at: 5 days ago - Pushed at: over 1 year ago - Stars: 3 - Forks: 2
AntoineHo/CircosAlignmentPlotter
Converts a part of an alignment (.PAF perhaps others sometimes) to a Circos image using BED and fasta files.
Language: Python - Size: 22.5 KB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 3 - Forks: 1
cumbof/TCGA2BED 📦
The Cancer Genome Atlas Data Extraction and Conversion Tool
Language: Java - Size: 14.9 MB - Last synced at: 2 months ago - Pushed at: about 5 years ago - Stars: 1 - Forks: 2
kcleal/sortedintersect
Fast intersection of sorted reference intervals
Language: Python - Size: 406 KB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 2 - Forks: 0
niqingyang/wp-github-gos
利用 github api 实现的一个存储图片/附件的 wordpress 插件
Language: PHP - Size: 335 KB - Last synced at: about 2 months ago - Pushed at: almost 5 years ago - Stars: 53 - Forks: 23
QuantGen/BEDMatrix
A matrix-like wrapper around PLINK .bed files
Language: C - Size: 1.84 MB - Last synced at: 18 days ago - Pushed at: 9 months ago - Stars: 18 - Forks: 2
aperium/PlantingAreaPricingTool
A web-app to help customers compare prices of products based on the area of planting beds.
Language: R - Size: 95.7 KB - Last synced at: 1 day ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0
alexpreynolds/sample
Performs memory-efficient reservoir sampling on very large input files delimited by newlines
Language: C - Size: 81.1 KB - Last synced at: about 1 month ago - Pushed at: about 5 years ago - Stars: 69 - Forks: 12
zmercury/cpp
C++ - Second Semester Notes
Language: C++ - Size: 598 KB - Last synced at: about 2 months ago - Pushed at: about 2 years ago - Stars: 7 - Forks: 1
vsmicrogenomics/bed-annotator
This script annotates a BED file with gene information using the Ensembl REST API. It is specifically designed to work with human genome build GRCh37 (hg19).
Language: Python - Size: 11.7 KB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0
dekastanjeboom/dekastanjeboom.github.io
De Kastanjeboom - Website
Language: JavaScript - Size: 39.6 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 0
cumbof/OpenGDC.py 📦
Python implementation of the OpenGDC software https://github.com/cumbof/OpenGDC
Language: Python - Size: 94.9 MB - Last synced at: 2 months ago - Pushed at: almost 3 years ago - Stars: 1 - Forks: 0
cumbof/OpenGDC 📦
An open-source Java tool to automatically extract and convert all clinical and genomic data from the Genomic Data Commons to BED, GTF, CSV, and JSON format
Language: Java - Size: 237 MB - Last synced at: 2 months ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 1
Grillo-0/bed
Embed files into your C applications
Language: C - Size: 12.7 KB - Last synced at: about 1 month ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0
mpieva/perl-ngs
Udo Stenzel's perl-ngs — a collection of Perl tools for next-generation sequencing [MIRROR]
Language: Perl - Size: 16.6 KB - Last synced at: about 1 year ago - Pushed at: about 7 years ago - Stars: 0 - Forks: 0
shurong-wang/ImageHosting
Size: 2.93 KB - Last synced at: about 1 year ago - Pushed at: about 7 years ago - Stars: 0 - Forks: 0
alexpreynolds/soda
Python-based UCSC genome browser snapshot-taker and gallery-maker
Language: JavaScript - Size: 1.94 MB - Last synced at: 12 days ago - Pushed at: about 1 year ago - Stars: 12 - Forks: 3
zarrine905/vcf_to_bed_intersect
Language: Python - Size: 31.3 KB - Last synced at: about 1 year ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0
PlatonB/high-perf-bio
Open-source toolkit that simplifies and speeds up work with bioinformatics data. high-perf-bio allows you easily upload VCF, BED or arbitrary tables to DB and execute popular bioinformatic queries without MongoDB Query Language knowledge.
Language: Python - Size: 2.63 MB - Last synced at: about 15 hours ago - Pushed at: almost 2 years ago - Stars: 9 - Forks: 0
deeptools/deeptools_intervals
A python library for constructing interval trees with associated exon/annotation information
Language: C - Size: 260 KB - Last synced at: 16 days ago - Pushed at: almost 6 years ago - Stars: 6 - Forks: 2
brentp/bedder-rs
an API for intersections of genomic data
Language: Rust - Size: 267 KB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 4 - Forks: 0
dmyersturnbull/bioio Fork of PharmGKB/genome-sequence-io
Micro-libraries for reading and writing genomic sequence data in various formats.
Language: Java - Size: 690 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 3 - Forks: 0
adarshjp/HBAS
Hospital Bed Allocation System for Covid-19 Patients
Language: EJS - Size: 92.8 KB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 1
henryjuho/WGAbed
A package for handling whole genome alignments by Pádraic Corcoran and Henry Barton
Language: Python - Size: 95.7 KB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 6 - Forks: 2
AntoineHo/CASH
Compare and shuffle heterozygosity using BED and VCF files
Language: Python - Size: 265 KB - Last synced at: over 1 year ago - Pushed at: almost 4 years ago - Stars: 2 - Forks: 0
sama2689/BED_Calc
A BED/EQD2 Calculator created using ESAPI. Allows the user to specify contour name and reference dose to use, and can extract DVH metrics to computed BED/EQD2 on (e.g. can compute the dose recieved by 10cc or by 10% of the volume to BED/EQD2). To use, build in visual studio and then run the compiled dlls directly from Eclipse.
Language: C# - Size: 14.6 KB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 3 - Forks: 1
vidbina/stage-bed
Stage Bed :metal:
Size: 4.82 MB - Last synced at: about 1 year ago - Pushed at: about 6 years ago - Stars: 1 - Forks: 0
sabouri1994/Bedsore_Project
Anti Bedsore bed
Size: 64.3 MB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
quitnowapp/quitnow-sleep-time
The user is sleeping: don't launch that notification!
Language: Java - Size: 72.3 KB - Last synced at: about 1 year ago - Pushed at: about 6 years ago - Stars: 33 - Forks: 3
ToddBailey/FlightOfTheNapigator
Language: C - Size: 25.4 KB - Last synced at: almost 2 years ago - Pushed at: about 8 years ago - Stars: 0 - Forks: 0
xaviercaju/Marlin-MR1-2022
Longer LKx Pro and Alfawise Ux0 pro enchanced Marlin. Based on original firmware but with new functions.
Language: C++ - Size: 1.87 MB - Last synced at: almost 2 years ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0
eloualiche/entrydatar
Public data on firm entry from the Census and the BLS in a R package
Language: R - Size: 838 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 11 - Forks: 6
aniketk21/tfbs-prediction
Predicting Transcription Factor Binding Sites from ENCODE data using Machine Learning
Language: Python - Size: 6.32 MB - Last synced at: almost 2 years ago - Pushed at: almost 8 years ago - Stars: 2 - Forks: 0
JoeyTawadrous/SunriseAlarm
Sunrise Alarm: Surprise Clock - Never be late again
Language: Swift - Size: 54 MB - Last synced at: about 1 year ago - Pushed at: over 4 years ago - Stars: 8 - Forks: 0
tikinetwork/SleepPercentage
Skip the night when more than 49% of players are sleeping. (1.14)
Language: Java - Size: 6.84 KB - Last synced at: almost 2 years ago - Pushed at: almost 6 years ago - Stars: 0 - Forks: 0
cryy/BedwarsStatsReleases
Releases of the BedwarsStats project.
Size: 106 KB - Last synced at: almost 2 years ago - Pushed at: about 4 years ago - Stars: 5 - Forks: 0
MehradN/ComfyBeds
A Fabric Minecraft mod adding quality-of-life features to beds.
Language: Java - Size: 1.25 MB - Last synced at: 3 months ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0
sivkri/exon-bed-generator
Exon BED Generator: A script to download, process, and generate a BED file with exon coordinates for Homo sapiens from a GTF file
Language: Shell - Size: 3.91 KB - Last synced at: 2 months ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0
PGG106/ReadMat
Series of experiments on the BED dataset
Language: Python - Size: 11.7 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0
hotwolf/DIYLaserBed
An adjustable bed for a K40 laser cutter clone
Language: OpenSCAD - Size: 309 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 4 - Forks: 0
sajadamouei/chip-seq-dataset-decoding
Decode coverage.bedGraph files that use the run-length encoding format.
Language: Jupyter Notebook - Size: 115 KB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
YoannPa/Gff3ToBed
Language: Shell - Size: 22.5 KB - Last synced at: about 2 years ago - Pushed at: about 6 years ago - Stars: 4 - Forks: 3
manojbhosale/ngsUtils
Useful NGS utilities for everyday use in the form of stand-alone tool.
Language: Java - Size: 5.4 MB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 2 - Forks: 0
jacobbierstedt/gfftobed
Convert GFF3/GTF to BED
Language: C++ - Size: 55.7 KB - Last synced at: about 2 years ago - Pushed at: about 4 years ago - Stars: 5 - Forks: 2
mo-gaafar/smart-hospital-bed-avr
An automatic temperature & posture controller prototype for hospital beds. My first project using Embedded C and the Atmega328p MCU
Language: C - Size: 3.87 MB - Last synced at: about 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 2
ctSkennerton/bioawk Fork of lh3/bioawk
BWK awk modified for biological data
Language: C - Size: 2.6 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 11 - Forks: 2
MazeWave/Vanilla-Raytraced-Addons-Glowing-Ores
Glowing Ores addons for Vanilla Raytraced.
Language: PowerShell - Size: 6.83 MB - Last synced at: almost 2 years ago - Pushed at: about 4 years ago - Stars: 1 - Forks: 0
Basesolve/projectx-bed-operations
This repo contains generic code for bed level operaitons
Size: 0 Bytes - Last synced at: about 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0
VoronDM/blast2bed Fork of nterhoeven/blast2bed
convert a blast output to a bed file
Language: Shell - Size: 20.5 KB - Last synced at: about 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0
gmccauley/OctoPrint-CooldownNotification
A plugin to execute gcode commands when the print bed cools to a certain temperature
Language: Python - Size: 41 KB - Last synced at: almost 2 years ago - Pushed at: almost 5 years ago - Stars: 6 - Forks: 4
marcrusso/DROPA
DRIP Optimized Peak Annotator
Language: Python - Size: 79.3 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 4 - Forks: 1
tsy19900929/N-Region
get bed file for N bases from a FASTA file
Language: Shell - Size: 7.81 KB - Last synced at: about 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0
alexpreynolds/cull-exemplars
Filter lower-scoring, neighboring genomic intervals within a specified distance
Language: Jupyter Notebook - Size: 58 MB - Last synced at: 8 days ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0
MrSeaWave/figure-bed-profile
上传的图床仓库
Size: 130 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 1
Badr-MOUFAD/Delta-LeGrand-website
Delta Le Grand. A gigantic 6 axes delta robot with a tilting bed. Repo of the website.
Language: CSS - Size: 57.5 MB - Last synced at: 2 days ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0
Badr-MOUFAD/Delta-LeGrand-Interface
Delta Le Grand. A gigantic 6 axes delta robot with a tilting bed. Repo of the user interface.
Language: JavaScript - Size: 313 KB - Last synced at: 2 days ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0
InitialPosition/SleepBlame
A spigot plugin that shows your server members that sleeping is cool
Language: Java - Size: 14.6 KB - Last synced at: about 2 months ago - Pushed at: about 4 years ago - Stars: 1 - Forks: 0
Benevolo-Projects/covid19-bed-allocation
Covid 19 Triage
Language: CSS - Size: 16.5 MB - Last synced at: about 2 years ago - Pushed at: almost 4 years ago - Stars: 3 - Forks: 2
lukaskoeller/furnish-ios
Furnish your flat at home, not in the store.
Language: Swift - Size: 13.9 MB - Last synced at: 3 months ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0
Altius/soda
Soda plot gallery generator
Language: JavaScript - Size: 1.12 MB - Last synced at: almost 2 years ago - Pushed at: about 4 years ago - Stars: 1 - Forks: 0
alexpreynolds/hglive
HiGlass-backed dynamic BED gallery browser
Language: JavaScript - Size: 888 KB - Last synced at: 8 days ago - Pushed at: over 6 years ago - Stars: 2 - Forks: 0
guillaumecharbonnier/greatr
A command-line tool and R package to automate multiple samples queries to GREAT and produce useful and nice-looking summary plots
Language: R - Size: 381 KB - Last synced at: 8 months ago - Pushed at: over 5 years ago - Stars: 1 - Forks: 0
alexpreynolds/convert2bed
Convert common binary and text genomic formats to BED
Language: C - Size: 192 KB - Last synced at: 8 days ago - Pushed at: over 4 years ago - Stars: 2 - Forks: 2
jlgarridol/TFG-SmartBeds
MINERÍA DE DATOS APLICADA A LA DETECCIÓN DE CRISIS EPILÉPTICAS - GII18.13
Language: Jupyter Notebook - Size: 47.5 MB - Last synced at: about 2 months ago - Pushed at: about 2 years ago - Stars: 2 - Forks: 1
milesroberts-123/convert-blast-to-bed
Convert the output of BLAST to a BED file format that's suitable for uploading to JBrowse.
Language: Python - Size: 19.5 KB - Last synced at: about 2 years ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 1
ptwz/bedscale
A digital scale to be integrated in furniture e.g. beds
Language: Python - Size: 6.84 KB - Last synced at: about 2 years ago - Pushed at: over 7 years ago - Stars: 10 - Forks: 1
jmjuanes/bedjs
Manage BED files with Node.JS (Bioinformatics)
Language: JavaScript - Size: 54.7 KB - Last synced at: 10 months ago - Pushed at: over 8 years ago - Stars: 1 - Forks: 0
Nofre/RGBed
Cool lights for the headboard of your bed
Language: Java - Size: 488 KB - Last synced at: about 2 years ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 1
afeiship/ipic
Ipic lite version.
Language: JavaScript - Size: 2.34 MB - Last synced at: 1 day ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 0
mnsmar/lendistro
Length distribution for records in common bioinformatics files
Language: Go - Size: 3.91 KB - Last synced at: about 2 years ago - Pushed at: almost 7 years ago - Stars: 0 - Forks: 0
delei/doc
Delei Doc bed
Size: 320 KB - Last synced at: about 2 months ago - Pushed at: about 8 years ago - Stars: 0 - Forks: 0
