GitHub topics: tcga
waldronlab/TCGAutils
Toolbox package for organizing and working with TCGA data
Language: R - Size: 652 KB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 27 - Forks: 7
waldronlab/MultiAssayExperiment
Bioconductor package for management of multi-assay data
Language: R - Size: 5.56 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 72 - Forks: 34
MarvinLer/tcga_segmentation
Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024
Language: Python - Size: 63.1 MB - Last synced at: 4 days ago - Pushed at: almost 4 years ago - Stars: 134 - Forks: 34
PoisonAlien/maftools
Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.
Language: R - Size: 72.3 MB - Last synced at: 6 days ago - Pushed at: 11 days ago - Stars: 462 - Forks: 222
Bioconductor/GenomicDataCommons
Provide R access to the NCI Genomic Data Commons portal.
Language: R - Size: 4.4 MB - Last synced at: 23 days ago - Pushed at: 24 days ago - Stars: 87 - Forks: 24
iVis-at-Bilkent/pathway-mapper
PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways
Language: TypeScript - Size: 65.8 MB - Last synced at: 6 days ago - Pushed at: about 1 year ago - Stars: 58 - Forks: 27
selcenari/ceRNAnetsim
Simulation of interactions miRNA:Competing Targets
Language: R - Size: 28.9 MB - Last synced at: 27 days ago - Pushed at: about 1 year ago - Stars: 5 - Forks: 2
kevinhu/cancer_data
A unified downloader+preprocessor for cancer genomics datasets
Language: Python - Size: 669 KB - Last synced at: 19 days ago - Pushed at: about 1 year ago - Stars: 16 - Forks: 7
BioinformaticsFMRP/TCGAbiolinks
TCGAbiolinks
Language: R - Size: 349 MB - Last synced at: 28 days ago - Pushed at: about 1 month ago - Stars: 314 - Forks: 115
LUMCPathAI/TCGA-Tools
Easy download and annotation extraction from public TCGA WSI datasets
Language: Python - Size: 10.1 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 1 - Forks: 0
nuno-agostinho/psichomics
Interactive R package to quantify, analyse and visualise alternative splicing
Language: R - Size: 58.9 MB - Last synced at: 7 days ago - Pushed at: 12 days ago - Stars: 37 - Forks: 11
greenelab/pancancer
Building classifiers using cancer transcriptomes across 33 different cancer-types
Language: Jupyter Notebook - Size: 28.8 MB - Last synced at: 5 days ago - Pushed at: about 6 years ago - Stars: 119 - Forks: 57
BioinformaticsFMRP/TCGAWorkflow
TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages
Language: TeX - Size: 36.9 MB - Last synced at: 3 days ago - Pushed at: almost 2 years ago - Stars: 44 - Forks: 20
ropensci/UCSCXenaTools
:package: An R package for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq https://cran.r-project.org/web/packages/UCSCXenaTools/
Language: R - Size: 3.01 MB - Last synced at: 7 days ago - Pushed at: 6 months ago - Stars: 107 - Forks: 12
dmis-lab/VAECox
ISMB 2020: Improved survival analysis by learning shared genomic information from pan-cancer data
Language: Python - Size: 85.5 MB - Last synced at: about 1 month ago - Pushed at: almost 5 years ago - Stars: 17 - Forks: 9
web4bio/webgen
WebGen Vertically Integrated Project
Language: JavaScript - Size: 20.6 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 10 - Forks: 27
greenelab/BioBombe
BioBombe: Sequentially compressed gene expression features enhances biological signatures
Language: Jupyter Notebook - Size: 2.28 GB - Last synced at: about 1 month ago - Pushed at: 10 months ago - Stars: 65 - Forks: 26
ArjunBasandrai/tcga-paad-survival-analysis
Survival Analysis on the TCGA-PAAD (The Cancer Genome Atlas-Pancreatic Adenocarcinoma) dataset
Language: Jupyter Notebook - Size: 20.3 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0
liupei101/Pipeline-Processing-TCGA-Slides-for-MIL
This repo provides the pipeline of processing TCGA whole-slide images for downstream pathology analysis.
Language: Python - Size: 14.8 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 55 - Forks: 11
Neal-Liu1/Multi-omics-integration
Contains code related to my multi-omics integration project at WEHI.
Language: R - Size: 155 KB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 1 - Forks: 0
cumbof/TCGA2BED 📦
The Cancer Genome Atlas Data Extraction and Conversion Tool
Language: Java - Size: 14.9 MB - Last synced at: about 2 months ago - Pushed at: about 5 years ago - Stars: 1 - Forks: 2
Moha-cm/RNAseq-Analysis
Bulk Rna-seq Analysis
Language: HTML - Size: 4.41 MB - Last synced at: 2 months ago - Pushed at: 6 months ago - Stars: 1 - Forks: 0
peterlipan/FoF
The official implementations of our BIBM'24 paper: Focus on Focus: Focus-oriented Representation Learning and Multi-view Cross-modal Alignment for Glioma Grading
Language: Python - Size: 22.9 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 3 - Forks: 0
pasmopy/breast_cancer
A text-based computational framework for patient -specific modeling for classification of cancers. iScience (2022).
Language: Python - Size: 302 MB - Last synced at: 27 days ago - Pushed at: 7 months ago - Stars: 6 - Forks: 5
averissimo/tcga.data
Genomic data from TCGA ready to be used (organized per tissue type and in matrix form)
Language: R - Size: 18.9 MB - Last synced at: about 1 month ago - Pushed at: over 6 years ago - Stars: 3 - Forks: 1
cumbof/OpenGDC.py 📦
Python implementation of the OpenGDC software https://github.com/cumbof/OpenGDC
Language: Python - Size: 94.9 MB - Last synced at: about 2 months ago - Pushed at: almost 3 years ago - Stars: 1 - Forks: 0
cumbof/OpenGDC 📦
An open-source Java tool to automatically extract and convert all clinical and genomic data from the Genomic Data Commons to BED, GTF, CSV, and JSON format
Language: Java - Size: 237 MB - Last synced at: about 2 months ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 1
metamaden/gdc_download_tools
Directions and code for generic GDC data downloads.
Size: 3.23 MB - Last synced at: 12 months ago - Pushed at: about 7 years ago - Stars: 0 - Forks: 0
histolab/gdc-api-wrapper
Genomic Data Commons API wrapper
Language: Python - Size: 32.2 KB - Last synced at: 19 days ago - Pushed at: over 4 years ago - Stars: 7 - Forks: 0
YoannPa/biotab.manager
Scripts to manage biotab files from TCGA.
Language: R - Size: 117 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0
pipaber/Multi-omics
This is a repository to show my experience analyzing different kinds of Omics data.
Language: JavaScript - Size: 5.46 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
ayueme/easyTCGA
Make TCGA download and prepare easy!
Language: R - Size: 5.38 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 70 - Forks: 9
Alberto-00/Detection-signature-cancer
The Cancer Genome Atlas (TCGA), a cancer genomics reference program, has molecularly characterized more than 20,000 primary cancer samples and paired normal samples covering 33 types of cancer. This joint effort between the NCI and the National Human Genome Research Institute began in 2006.
Language: Python - Size: 162 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 1
mariachiaragrieco/bulk-RNAseq
bulk-RNAseq analysis for Transcriptomics Course 2021 (MSc Bioinformatics for Computational Genomics)
Language: HTML - Size: 5.96 MB - Last synced at: about 1 year ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0
swiri021/Xena_wrapper
xenaPython wrapper
Language: Python - Size: 1.57 MB - Last synced at: about 1 year ago - Pushed at: about 6 years ago - Stars: 0 - Forks: 0
RobinPetit/Breast-Cancer-Purity
Study of breast cancer purity
Language: TeX - Size: 1.45 MB - Last synced at: about 1 year ago - Pushed at: almost 7 years ago - Stars: 0 - Forks: 0
msls-bioinfo/CmiRClustFinder_v1.0
CmiRClustFinder v1.0: a tool for identification of CNV co-locolized miRNA, miRNA clusers and genes in TCGA cancer cohorts.
Language: R - Size: 127 KB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 3 - Forks: 14
Caleydo/tdp_publicdb
Database connector for the bioinfoDB.hg38 database
Language: TypeScript - Size: 4.92 MB - Last synced at: 25 days ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 3
ZJUFanLab/CCL-cGPS
A clinical genomics-guided prioritizing strategy enables accurately selecting proper cancer cell lines for biomedical research
Language: R - Size: 593 KB - Last synced at: 5 days ago - Pushed at: over 4 years ago - Stars: 9 - Forks: 1
cognoma/cancer-data
TCGA data acquisition and processing for Project Cognoma
Language: Jupyter Notebook - Size: 19.4 MB - Last synced at: about 1 year ago - Pushed at: about 7 years ago - Stars: 21 - Forks: 28
rashindrie/ANSAC
Classification of whole-slide images based on tumor infiltrating lymphocyte grades using image-level labels
Language: Python - Size: 354 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
seahurt/tcga-utils
Some tools to handle tcga data
Language: Python - Size: 2.94 MB - Last synced at: over 1 year ago - Pushed at: about 6 years ago - Stars: 1 - Forks: 0
bpark-research/TCGA_Spark
Language: Jupyter Notebook - Size: 1.61 MB - Last synced at: over 1 year ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0
KarakulakTulay/gtex-tcga-data-download
Describes how to download RNA-Seq controlled data from GTEx via sra-toolkit and from TCGA via GDC Data Transfer Tool
Size: 14.6 KB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 3 - Forks: 0
deargen/DearCascadedWx
Public codes for Cascaded Wx algorithm to select genes relative with patients survivals.
Language: Python - Size: 24.5 MB - Last synced at: over 1 year ago - Pushed at: almost 6 years ago - Stars: 1 - Forks: 2
cdiener/proliferation
Project to study proliferation and metabolic liabilities across several thousand cancer samples.
Language: R - Size: 29.2 MB - Last synced at: over 1 year ago - Pushed at: about 8 years ago - Stars: 0 - Forks: 3
MartheLaisne/TCGA_Adam12_IkrameProject
Projet Ikrame : Nanostring, Activation du gène TSPS ADAM12 par TAK1 et KAT2A
Size: 19.3 MB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0
cpreid2/gdc-rnaseq-tool 📦
Tool to download/merge RNASeq data from the GDC Portal in matrices identified by TCGA barcode
Language: Python - Size: 3.39 MB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 33 - Forks: 14
tjiagoM/gtex-transcriptome-modelling
Multilayer modelling of the human transcriptome and biological mechanisms of complex diseases and traits
Language: Jupyter Notebook - Size: 53 MB - Last synced at: over 1 year ago - Pushed at: almost 4 years ago - Stars: 9 - Forks: 2
RRafiee/Bioconductor-GenomicDataCommons
Genomic Data Commons Query
Language: R - Size: 18 MB - Last synced at: over 1 year ago - Pushed at: over 7 years ago - Stars: 1 - Forks: 0
knightlab-analyses/mycobiome
Pan-cancer mycobiome atlas
Language: Jupyter Notebook - Size: 2.07 GB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 16 - Forks: 12
texchi2/pvalueTex
Supplementary Material of manuscript, and Cutoff Finding R script
Language: R - Size: 22 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 4 - Forks: 1
andreabc/TCGA_UUID_barcode_mapping
Maps TCGA individual file UUIDs to respective patient and sample barcodes
Language: Jupyter Notebook - Size: 39 MB - Last synced at: 6 months ago - Pushed at: almost 7 years ago - Stars: 3 - Forks: 1
bernardo-de-almeida/PanCancer_CentrosomeAmplification
Pan-cancer association of a centrosome amplification gene expression signature with genomic alterations and clinical outcome
Size: 22.5 MB - Last synced at: almost 2 years ago - Pushed at: over 3 years ago - Stars: 4 - Forks: 4
bblodfon/paad-survival-bench
Benchmark survival ML models against a multimodal TCGA dataset
Language: R - Size: 155 MB - Last synced at: about 2 months ago - Pushed at: about 2 years ago - Stars: 3 - Forks: 0
aozh7/SmulTCan
Survival TXT files for the 33 TCGA datasets
Size: 612 KB - Last synced at: 9 months ago - Pushed at: over 3 years ago - Stars: 2 - Forks: 3
matteocereda/GSECA
Gene Set Enrichment Class Analysis for heterogeneous RNA sequencing data
Language: R - Size: 56.4 MB - Last synced at: 11 months ago - Pushed at: over 4 years ago - Stars: 5 - Forks: 1
vjcitn/BiocOV
An overview of Bioconductor with applications to multiomics, genome representation, and single-cell biologiy
Language: R - Size: 4.31 MB - Last synced at: 2 months ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 1
mariachiaragrieco/TCGAclassification
Python project for classification of normal vs tumoral samples using TCGA gene expression data for Scientific Programming Course 2021 (MSc Bioinformatics for Computational Genomics)
Language: Jupyter Notebook - Size: 697 KB - Last synced at: about 1 year ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0
hclimente/smartas
📓Notebook of Climente-González et al. (2017), The Functional Impact of Alternative Splicing in Cancer.
Language: Jupyter Notebook - Size: 504 MB - Last synced at: 3 months ago - Pushed at: about 7 years ago - Stars: 14 - Forks: 5
Hemangini09/RNA-seq-data-analysis-with-edgeR-
Perform RNA-seq data analysis with edgeR package of bioconductor
Language: R - Size: 1.95 KB - Last synced at: 8 months ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
Hemangini09/RNA-seq-data-analysis-with-DESeq2
Performing RNA-seq data analysis with DESeq2 package of bioconductor
Language: R - Size: 1000 Bytes - Last synced at: 8 months ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
Hemangini09/RNA-seq-limma-voom-
Performing RNA-seq data analysis with limma package
Language: R - Size: 1.95 KB - Last synced at: 8 months ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
cognoma/cognoma
Putting machine learning in the hands of cancer biologists
Language: Jupyter Notebook - Size: 5.3 MB - Last synced at: about 1 year ago - Pushed at: over 7 years ago - Stars: 96 - Forks: 31
t-silvers/casskit
casskit: cancer association studies toolkit
Language: Python - Size: 517 KB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
Arshammik/Bioinformatics
Courses, projects and challenges in bioinformatics,
Language: Python - Size: 14.7 MB - Last synced at: about 2 years ago - Pushed at: almost 3 years ago - Stars: 3 - Forks: 0
inab/mg-process_TCGA_CD 📦
TCGA Cancer Detection (for MuG/VRE OpenEBench installation)
Language: Python - Size: 1020 KB - Last synced at: about 1 year ago - Pushed at: almost 6 years ago - Stars: 0 - Forks: 0
mar-kan/thesis
BSc thesis: "Convolutional Neural Networks and their Application in Cancer Diagnosis based on RNA-Sequencing"
Language: Jupyter Notebook - Size: 1.76 MB - Last synced at: about 2 years ago - Pushed at: about 3 years ago - Stars: 3 - Forks: 0
waldronlab/MultiAssayExperiment.TCGA
Language: R - Size: 572 KB - Last synced at: 10 months ago - Pushed at: almost 2 years ago - Stars: 7 - Forks: 4
rezacsedu/Neural-Ensemble-Method-for-Cancer-Prediction
A Snapshot Neural Ensemble Method for Cancer Type Prediction Based on Copy Number Variations
Language: Jupyter Notebook - Size: 20.8 MB - Last synced at: about 2 years ago - Pushed at: almost 3 years ago - Stars: 19 - Forks: 9
meji9086/TCGA-Data-Analysis
cancer mRNAseq data analysis
Language: Jupyter Notebook - Size: 8.72 MB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 2
CasillasAlba/GeneFlow
GeneFlow is a scalable and flexible software library that encompasses data acquisition methods, preprocessing techniques, data analytics, data visualization, and Machine Learning algorithms that can be applied to genomic data.
Language: Jupyter Notebook - Size: 8.94 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 2 - Forks: 0
BioinformaticsFMRP/Bioc2017.TCGAbiolinks.ELMER
Integrative analysis workshop with TCGAbiolinks and ELMER
Size: 113 MB - Last synced at: 3 days ago - Pushed at: almost 8 years ago - Stars: 6 - Forks: 0
AndrewGarven/DifferentialExpression
RNA-sequencing differential expression analysis (Deseq2 & edgeR)
Language: R - Size: 3.57 MB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
nedaghohabi/omics-miner Fork of u-brite/o-miner
Patient stratification and molecular mechanism identification using patient clinotypes and transcriptomics embeddings
Language: Jupyter Notebook - Size: 26.4 MB - Last synced at: 14 days ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
inab/TCGA_benchmarking_workflow
Language: HTML - Size: 7.31 MB - Last synced at: 3 months ago - Pushed at: about 2 years ago - Stars: 3 - Forks: 3
HuaZou/TCGA_HNSC
An immune-related gene prognostic index for head and neck squamous cell carcinoma
Language: HTML - Size: 18.5 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 2 - Forks: 0
u-brite/o-miner
Patient stratification and molecular mechanism identification using patient clinotypes and transcriptomics embeddings
Language: Jupyter Notebook - Size: 26.4 MB - Last synced at: 14 days ago - Pushed at: almost 3 years ago - Stars: 1 - Forks: 2
choilab-jefferson/TCGA_pipeline
Radiomics pipeline for TCGA datasets
Language: Nextflow - Size: 15.6 KB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0
SalamOsman/Creating-a-meta-file-from-TCGA-raw-clinical-file
Workflow for handling TCGA clinical data in R
Language: R - Size: 29.3 KB - Last synced at: about 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0
SanandhKumar02/MiniProject_ProstateCancer
Prostate Cancer Biomarker Identification using Machine learning approach
Language: Jupyter Notebook - Size: 41.2 MB - Last synced at: about 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0
amarinderthind/mutation_load_comparison_plot
This plot is useful for the comparison of mutational load across the cancer types, with input data in 2 coulmns i.e cancer types and mutatonal load for each samples in specificed cancer type.
Language: R - Size: 13.7 KB - Last synced at: about 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0
4DtyU/R-scripting-samples_AnnaBird
Example code supporting immunology research
Language: HTML - Size: 11 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
dogmaticcentral/CG
CG - cancer genomics pipeline
Language: Python - Size: 37.6 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 5 - Forks: 4
inab/TCGA_benchmarking_dockers
OpenEBench TCGA benchmarking Docker declarations
Language: Python - Size: 4.34 MB - Last synced at: 18 days ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 4
genepattern/TCGA.SampleSelection
TCGA.SampleSelection wrapper module for GenePattern.
Language: R - Size: 10.5 MB - Last synced at: 3 months ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 1
sales-lab/omicsdata
Support package for the "Omics Data" course
Language: R - Size: 43.9 KB - Last synced at: 6 days ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 1
bcgsc/tasrkleat-TCGA-analysis-scripts
This repo stores codes for the analysis of tasrkleat results on TCGA RNA-Seq dataa
Language: Jupyter Notebook - Size: 181 MB - Last synced at: about 1 month ago - Pushed at: over 6 years ago - Stars: 4 - Forks: 1
texchi2/hnscc
HNSCC survival analysis
Language: R - Size: 873 MB - Last synced at: about 2 years ago - Pushed at: almost 4 years ago - Stars: 2 - Forks: 0
Anustup900/Histopathology-cancer-image-data-exploration-and-detection-by-deep-learning-VGG-16-CNN
Data Exploration , visualization and deep learning detection as well classification of Histopathology image of cancers by CNN-VGG16 on tcga data set
Language: Jupyter Notebook - Size: 2.28 MB - Last synced at: about 2 years ago - Pushed at: almost 5 years ago - Stars: 2 - Forks: 0
ionut-d/ML_TCGA_data_mining_Wnt_signalling_ColoRectalCancer
UNSUPERVISED MACHINE LEARNING (CLUSTERING): TCGA data mining for studying the system of interactions between sub-branches of Wnt signalling pathway in colorectal cancer
Language: R - Size: 16.6 KB - Last synced at: almost 2 years ago - Pushed at: about 4 years ago - Stars: 1 - Forks: 1
salzmanlab-admin/DEEPEST-Fusion
DEEPEST-Fusion is a fusion detection algorithm specially designed for screening massive cancer sequencing databases
Language: R - Size: 10 MB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 4 - Forks: 5
cgplab/PAMESdata
Precomputed informative CpG sites and CpG islands to be used with PAMES package
Language: R - Size: 39.9 MB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 2
MI2DataLab/KRAB_ZNF
KRAB-ZNF explorer - expression of KRAB-ZNF- transcription factors in The Cancer Genome Atlas study
Language: HTML - Size: 454 MB - Last synced at: about 1 year ago - Pushed at: almost 6 years ago - Stars: 1 - Forks: 2
evan199893/TCGA_expression_clinical_combinator
Use this program can let user quickly combine the miRNA/Gene expression and clinical data. Speed up the data preprocessing step.
Language: Python - Size: 33.2 KB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 0
vsundesha/TCGA_benchmarking_workflow Fork of inab/TCGA_benchmarking_workflow
Size: 5.47 MB - Last synced at: about 2 years ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0
BioinformaticsFMRP/TCGAWorkflowData
Example data to TCGAWorkflow
Language: R - Size: 125 MB - Last synced at: 3 days ago - Pushed at: over 2 years ago - Stars: 4 - Forks: 5
gwaybio/pancan_viz
Visualizing TCGA pancancer datasets
Language: Jupyter Notebook - Size: 16.7 MB - Last synced at: 2 months ago - Pushed at: over 7 years ago - Stars: 1 - Forks: 1
lcolladotor/recount-brain-bog19
Poster for Biology of Genomes 2019 (#bog19) on recount-brain
Language: HTML - Size: 3.33 MB - Last synced at: 3 months ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 3
HFooladi/tybalt Fork of greenelab/tybalt
Training and evaluating a variational autoencoder for pan-cancer gene expression data
Language: Jupyter Notebook - Size: 67.2 MB - Last synced at: about 2 years ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 1
