liupei101/PseMix

[IEEE TMI 2024] Pseudo-Bag Mixup Augmentation for Multiple Instance Learning-Based Whole Slide Image Classification

Language: Python - Size: 43.4 MB - Last synced: about 4 hours ago - Pushed: about 5 hours ago - Stars: 23 - Forks: 2

GeorgeBatch/dependency-mil

[ISBI 2024] Accurate Subtyping of Lung Cancers by Modelling Class Dependencies

Language: Jupyter Notebook - Size: 344 KB - Last synced: about 20 hours ago - Pushed: about 21 hours ago - Stars: 0 - Forks: 0

liupei101/Pipeline-Processing-TCGA-Slides-for-MIL

This repo provides an exhaustive pipeline of processing TCGA whole-slide images for downstream multiple instance learning.

Language: Python - Size: 14.8 MB - Last synced: 2 days ago - Pushed: 2 days ago - Stars: 23 - Forks: 6

john-fante/my-deep-learning-projects

My Deep Learning Projects (Classification, Segmentation, Object Detection, NLP, Deep Multiple Instance Learning)

Language: Jupyter Notebook - Size: 114 MB - Last synced: 5 days ago - Pushed: 5 days ago - Stars: 1 - Forks: 0

john-fante/john-fante

In my code portfolio, I generally try new techniques and methods in machine learning. I don't like only copying and pasting.

Size: 290 KB - Last synced: 5 days ago - Pushed: 5 days ago - Stars: 0 - Forks: 0

4pygmalion/ASC3

3ASC: variant prioritization tool leveraging multiple instance learning for rare Mendelian disease genomic testing

Language: Jupyter Notebook - Size: 2.25 MB - Last synced: 13 days ago - Pushed: 13 days ago - Stars: 6 - Forks: 0

mskcc/mimsi

Microsatellite Instability Classification using Multiple Instance Learning

Language: Python - Size: 376 MB - Last synced: 20 days ago - Pushed: 20 days ago - Stars: 19 - Forks: 5

miccaiif/INS

Official Pytorch Code of Our Paper: Rethinking Multiple Instance Learning for Whole Slide Image Classification: A Good Instance Classifier is All You Need

Language: Python - Size: 2 MB - Last synced: 22 days ago - Pushed: 22 days ago - Stars: 2 - Forks: 0

SBU-BMI/wsinfer-mil

CLI tool to run specimen-level inference on whole slide images

Language: Python - Size: 39.1 KB - Last synced: 28 days ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

skent259/omisvm-sims

Simulation code for "Ordinal Multiple Instance Support Vector Machines"

Language: R - Size: 149 KB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 0 - Forks: 0

agentdr1/LA_MIL

Implementation of LA_MIL, Local Attention Graph-based Transformer for WSIs, PyTorch

Language: Python - Size: 686 KB - Last synced: 28 days ago - Pushed: 8 months ago - Stars: 22 - Forks: 0

ChongQingNoSubway/PDL

Code for the paper " PDL: Regularizing Multiple Instance Learning with Progressive Dropout Layers "

Language: Python - Size: 1.44 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 111 - Forks: 29

miccaiif/DGMIL

Official PyTorch implementation of our MICCAI 2022 paper: DGMIL: Distribution Guided Multiple Instance Learning for Whole Slide Image Classification.

Language: Python - Size: 2.42 MB - Last synced: 28 days ago - Pushed: 4 months ago - Stars: 28 - Forks: 4

MarvinLer/tcga_segmentation

Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024

Language: Python - Size: 63.1 MB - Last synced: 3 days ago - Pushed: almost 3 years ago - Stars: 113 - Forks: 34

sotiraslab/SC-MIL

This repo for the paper titled "SC-MIL: Sparsely Coded Multiple Instance Learning for Whole Slide Image Classification"

Language: Python - Size: 4.49 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 4 - Forks: 0

rosasalberto/mil

Multiple instance learning library for Python

Language: Python - Size: 9.72 MB - Last synced: about 1 month ago - Pushed: almost 3 years ago - Stars: 57 - Forks: 11

miccaiif/WENO

Official PyTorch implementation of our NeurIPS 2022 paper: Weakly Supervised Knowledge Distillation for Whole Slide Image Classification

Language: Python - Size: 1.59 MB - Last synced: 28 days ago - Pushed: 4 months ago - Stars: 52 - Forks: 12

giakoumoglou/classification

Classification of the MNIST dataset using various Deep Learning techniques

Language: Python - Size: 1020 KB - Last synced: about 2 months ago - Pushed: over 1 year ago - Stars: 20 - Forks: 3

giakoumoglou/pymil

Multiple Instance Learning in PyTorch

Language: Python - Size: 32.2 KB - Last synced: about 2 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

liupei101/AdvMIL

[MedIA 2024] The implementation of AdvMIL: Adversarial Multiple Instance Learning for the Survival Analysis on Whole-Slide Images

Language: Python - Size: 2.18 MB - Last synced: about 1 month ago - Pushed: 7 months ago - Stars: 21 - Forks: 8

dazhangyu123/ACMIL

WSI classification

Language: Python - Size: 4.64 MB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 21 - Forks: 2

AshrithSagar/Classification-Fungal10x

Fungal classification at 10x resolution

Language: Python - Size: 107 KB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 1 - Forks: 0

dolongbien/HumanBehaviorBKU

Abnormal Human Behaviors Detection/ Road Accident Detection From Surveillance Videos/ Real-World Anomaly Detection in Surveillance Videos/ C3D Feature Extraction

Language: Jupyter Notebook - Size: 645 MB - Last synced: about 2 months ago - Pushed: over 1 year ago - Stars: 156 - Forks: 57

binli123/dsmil-wsi

DSMIL: Dual-stream multiple instance learning networks for tumor detection in Whole Slide Image

Language: Python - Size: 48.1 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 302 - Forks: 82

DeepMicroscopy/Cox_AMIL

Code for our BVM workshop submission "Attention-based Multiple Instance Learning for Survival Prediction on Lung Cancer Tissue Microarrays"

Language: Jupyter Notebook - Size: 60.1 MB - Last synced: 22 days ago - Pushed: over 1 year ago - Stars: 5 - Forks: 3

dmandache/Chowder

Language: Jupyter Notebook - Size: 4.2 MB - Last synced: 3 months ago - Pushed: over 2 years ago - Stars: 1 - Forks: 0

gu-yaowen/MilGNet

MilGNet: Deep Multiple Instance Learning on Heterogeneous Graph for Drug-disease Association Prediction

Language: Python - Size: 64.5 MB - Last synced: 21 days ago - Pushed: 5 months ago - Stars: 9 - Forks: 2

AmayaGS/MUSTANG

Multi-stain graph self attention multiple instance learning for histopathology Whole Slide Images - BMVC 2023

Language: Python - Size: 2.58 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 11 - Forks: 2

amirezzati/iabi

Intelligent analysis of Biomedical images course

Language: Jupyter Notebook - Size: 267 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

ezermoysis1/sma-detection-in-blood-samples

Detecting Severe Malaria Anaemia and investigating the morphological characteristics of red blood cells at its presenc

Language: Python - Size: 39.5 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

tueimage/MAD-MIL

Multi-head Attention-based Deep Multiple Instance Learning

Language: Python - Size: 69.9 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

sagizty/MIL-SI

Official release of Shuffle Instances-based Vision Transformer for Pancreatic Cancer ROSE Image Classification

Language: Jupyter Notebook - Size: 618 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 12 - Forks: 4

gu-yaowen/EquiVS

Employing Molecular Conformations for Ligand-based Virtual Screening with Equivariant Graph Neural Network and Deep Multiple Instance Learning

Language: Python - Size: 854 KB - Last synced: 22 days ago - Pushed: 9 months ago - Stars: 4 - Forks: 1

yuantn/MI-AOD

Code for Multiple Instance Active Learning for Object Detection, CVPR 2021

Language: Python - Size: 16.5 MB - Last synced: 7 months ago - Pushed: about 1 year ago - Stars: 305 - Forks: 44

YashSharma/C2C

Implementation of Cluster-to-Conquer: A Framework for End-to-End Multi-Instance Learning for Whole Slide Image Classification approach.

Language: Python - Size: 2.27 MB - Last synced: 8 months ago - Pushed: over 2 years ago - Stars: 51 - Forks: 12

Zhihan-Leo-Liu/DosaCNV

Deep multiple instance learning model for predicting deletion pathogenicity and gene haploinsufficiency.

Language: R - Size: 24.7 MB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 0 - Forks: 0

MinZHANG-WHU/CDMI-Net

The implementation of CDMI-Net in Paper - Deep Multiple Instance Learning for Landslide Mapping

Language: Python - Size: 661 KB - Last synced: 4 months ago - Pushed: over 3 years ago - Stars: 23 - Forks: 9

skent259/ordinal-mil-nnets

Experiments testing ordinal and multiple instance learning neural networks

Language: Python - Size: 30 MB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 0 - Forks: 0

skent259/mildsvm

Multiple Instance Learning with Distributions, SVM

Language: R - Size: 865 KB - Last synced: 15 days ago - Pushed: almost 2 years ago - Stars: 2 - Forks: 0

JAEarly/MIL-Land-Cover-Classification

Code for the paper "Scene-to-Patch Earth Observation: Multiple Instance Learning for Land Cover Classification".

Language: Python - Size: 782 MB - Last synced: 4 months ago - Pushed: over 1 year ago - Stars: 10 - Forks: 1

suamin/MIL-RBERT

MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)

Language: Python - Size: 139 KB - Last synced: 9 months ago - Pushed: 12 months ago - Stars: 15 - Forks: 5

vrishk/cs230

CS 230 Final Project

Language: Jupyter Notebook - Size: 22.6 MB - Last synced: 10 months ago - Pushed: over 2 years ago - Stars: 1 - Forks: 0

bianhao123/Mixed_supervision

MICCAI2022: Multiple Instance Learning with Mixed Supervision in Gleason Grading.

Language: Python - Size: 628 KB - Last synced: 12 months ago - Pushed: about 1 year ago - Stars: 42 - Forks: 11

howard-hou/UniqueClassCount

Pytorch implementation for ICLR 2020 paper "Weakly Supervised Clustering by Exploiting Unique Class Count"

Language: Jupyter Notebook - Size: 32.9 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

asalekin-ubiquitouslab/Modality-wise-Multple-Instance-Learning

The repository contains our implementation for the work to be presented at Ubicomp 2022

Language: Jupyter Notebook - Size: 31.1 MB - Last synced: 8 months ago - Pushed: almost 2 years ago - Stars: 3 - Forks: 0

LouisStefanuto/Detection-of-the-PIK3CA-mutation-in-breast-cancer

Data challenge by Owkin (2023).

Language: Jupyter Notebook - Size: 1.3 MB - Last synced: 6 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

PhilipChicco/MICCAI2020mil

MICCAI2020. "Multiple Instance Learning with Center Embeddings for Histopathology Image Classification"

Language: Python - Size: 809 KB - Last synced: over 1 year ago - Pushed: over 3 years ago - Stars: 28 - Forks: 11

vasgaowei/pytorch_MELM

The pytorch implementation of the Min-Entropy Latent Model for Weakly Supervised Object Detection

Language: Python - Size: 19 MB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 99 - Forks: 19

dai08srhg/MS-DA-MIL-CNN

PyTorch implementation of MS-DA-MIL

Language: Python - Size: 7.81 KB - Last synced: 11 months ago - Pushed: about 3 years ago - Stars: 3 - Forks: 2

JingyuXIN05/Combating-False-Data-Injection-Attacks-on-Human-Centric-Sensing-Applications

Language: Python - Size: 22.5 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 1 - Forks: 0

bupt-ai-cz/Thyroid-Cytopathological-Diagnosis-with-AMIL_MSFF

Attention Based Multi-Instance Thyroid Cytopathological Diagnosis with Multi-Scale Feature Fusion

Language: Python - Size: 11.7 KB - Last synced: over 1 year ago - Pushed: almost 3 years ago - Stars: 8 - Forks: 2

inoueakimitsu/milwrap

Wrapping single instance learning algorithms for fitting them to data for multiple instance learning

Language: Jupyter Notebook - Size: 580 KB - Last synced: about 10 hours ago - Pushed: over 1 year ago - Stars: 1 - Forks: 0

jostmey/MaxSnippetModelOvarian

Statistical classifier for diagnosing ovarian cancer from immune repertoires

Language: Python - Size: 4.2 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 1 - Forks: 0

pinouche/kernel_mean_embedding_distribution-regression

code for the KDD 2019 workshop paper https://arxiv.org/abs/1904.10583. Kernel mean embedding for distribution regression.

Language: Jupyter Notebook - Size: 10.7 KB - Last synced: over 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

pinouche/attention-mechanism_distribution-regression

Code for the KDD 2019 workshop paper. Attention mechanism for distribution regression.

Language: Jupyter Notebook - Size: 111 KB - Last synced: over 1 year ago - Pushed: over 4 years ago - Stars: 1 - Forks: 3

pinouche/transformer-MIR

Implementation of the basic transformer head for multiple-instance-regression (MIR)

Language: Jupyter Notebook - Size: 14.6 KB - Last synced: over 1 year ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

AgenoDrei/pad_classification

Source code for the paper "Automated Detection of Peripheral Artery Disease From High Resolution Color Fundus Photographs" by Mueller, S et al.

Language: Jupyter Notebook - Size: 1.99 MB - Last synced: over 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

dstarrago/fuzzy_rough_classifiers

Framework for developing fuzzy and fuzzy-rough classification models for multiple instance data

Language: Java - Size: 5.6 MB - Last synced: 12 months ago - Pushed: about 4 years ago - Stars: 1 - Forks: 1

dstarrago/mismote

Class imbalance correction algorithm for multiple-instance data

Language: Java - Size: 5.39 MB - Last synced: 12 months ago - Pushed: about 5 years ago - Stars: 0 - Forks: 0

dstarrago/mil-noise-filter

Filter algorithm for noise reduction in multiple-instance classification problems

Language: Java - Size: 5.69 MB - Last synced: 12 months ago - Pushed: about 5 years ago - Stars: 0 - Forks: 0

dstarrago/MIClassImbalanceSolutions

Sampling-based class imbalance solutions for multiple-instance classification

Language: Java - Size: 93.8 KB - Last synced: 12 months ago - Pushed: about 5 years ago - Stars: 0 - Forks: 0

dstarrago/mirocchio

Prototype based classification algorithm for multiple-instance data

Language: Java - Size: 47.9 KB - Last synced: 12 months ago - Pushed: about 5 years ago - Stars: 0 - Forks: 0

nathanin/tfmodels Fork of BioImageInformatics/tfmodels

Language: Python - Size: 11.1 MB - Last synced: over 1 year ago - Pushed: about 6 years ago - Stars: 1 - Forks: 0